CRANberries

CRANberries aggregates information about new and and updated packages from the
CRAN network for R available as this html version and a corresponding RSS feed.
Created and provided by Dirk Eddelbuettel.

Wed, 03 Sep 2008

Package randtoolbox updated to version 1.04 with previous version 1.03 dated 2008-08-31

Author: Christophe Dutang (except SFMT algorithm from M. Matsumoto, M. Saito and WELL generator from P. L'Ecuyer and Knuth-TAOCP RNG from D. Knuth)
Title: toolbox for pseudo and quasi random number generation and RNG tests.
Description: The package provides (1) pseudo random generators - general linear congruential generators (Park Miller) and multiple recursive generators (Knuth TAOCP), generalized feedback shift register (SF-Mersenne Twister algorithm and WELL generator); (2) a quasi random generator - the Torus algorithm (for other low-discrepancy sequences, use the 'Rmetrics - fOptions' package) and (3) some additional tests such as the gap test, the serial test, the poker test... For true random number generation, use the 'random' package and for Latin Hypercube Sampling (a hybrid qmc method), use the 'lhs' package.

Diff between randtoolbox versions 1.03 dated 2008-08-31 and 1.04 dated 2008-09-03

 DESCRIPTION              |    8 
 configure                |  180 ++
 configure.ac             |    5 
 inst/NEWS                |   12 
 inst/doc/randtoolbox.pdf | 3705 +++++++++++++++++++++++------------------------
 man/randgen.Rd           |   22 
 src/SFMT.h               |    2 
 src/config.h             |    6 
 src/config.h.in          |    2 
 9 files changed, 2053 insertions(+), 1889 deletions(-)

More information about randtoolbox at CRAN
Path: /cran/updated | permanent link

Package oc updated to version 0.04 with previous version 0.03 dated 2007-08-25

Author: Keith Poole , Jeffrey Lewis , James Lo and Royce Carroll
Title: OC Roll Call Analysis Software.
Description: Estimates Optimal Classification scores from roll call votes supplied though a 'rollcall' object from package 'pscl'.

Diff between oc versions 0.03 dated 2007-08-25 and 0.04 dated 2008-09-03

 DESCRIPTION        |    8 +-
 inst/doc/Rplots.ps |  204 ++++++++++++++++++++++++++---------------------------
 inst/doc/oc.pdf    |binary
 src/Makevars       |    1 
 src/oc.f90         |  140 +++++++++++++-----------------------
 5 files changed, 157 insertions(+), 196 deletions(-)

More information about oc at CRAN
Path: /cran/updated | permanent link

Package msProcess updated to version 1.0.4 with previous version 1.0.3 dated 2008-06-02

Author: Lixin Gong, William Constantine, and Alex Chen
Title: Protein Mass Spectra Processing
Description: This package provides tools for protein mass spectra processing including data preparation, denoising, noise estimation, baseline correction, intensity normalization, peak detection, peak alignment, peak quantification, and various functionalities for data ingestion/conversion, mass calibration, data quality assessment, and protein mass spectra simulation. It also provides auxiliary tools for data representation, data visualization, and pipeline processing history recording and retrieval.

Diff between msProcess versions 1.0.3 dated 2008-06-02 and 1.0.4 dated 2008-09-03

 msProcess-1.0.3/msProcess/swingui/R/getMethodProps.q          |only
 msProcess-1.0.4/msProcess/DESCRIPTION                         |   10 
 msProcess-1.0.4/msProcess/R/ms_align.q                        |   12 
 msProcess-1.0.4/msProcess/R/ms_base.q                         |    4 
 msProcess-1.0.4/msProcess/R/ms_gui.q                          |   46 
 msProcess-1.0.4/msProcess/R/ms_io.q                           |    7 
 msProcess-1.0.4/msProcess/R/ms_peak.q                         |   13 
 msProcess-1.0.4/msProcess/R/ms_set.q                          |   29 
 msProcess-1.0.4/msProcess/R/ms_util.q                         |    7 
 msProcess-1.0.4/msProcess/R/ms_xml.q                          |    2 
 msProcess-1.0.4/msProcess/R/zzz.R                             |  337 
 msProcess-1.0.4/msProcess/demo/00Index                        |   12 
 msProcess-1.0.4/msProcess/inst                                |only
 msProcess-1.0.4/msProcess/man/msList.Rd                       |   11 
 msProcess-1.0.4/msProcess/man/msLogic.Rd                      |    2 
 msProcess-1.0.4/msProcess/man/msObjects.Rd                    |only
 msProcess-1.0.4/msProcess/man/msPeakMRD.Rd                    |    4 
 msProcess-1.0.4/msProcess/man/msPlot.Rd                       |    2 
 msProcess-1.0.4/msProcess/man/msProcess-package.Rd            |   86 
 msProcess-1.0.4/msProcess/man/msSet.Rd                        |    2 
 msProcess-1.0.4/msProcess/man/msVisual.Rd                     |only
 msProcess-1.0.4/msProcess/swingui/R/backMSAlign.q             |   67 
 msProcess-1.0.4/msProcess/swingui/R/backMSDenoise.q           |   46 
 msProcess-1.0.4/msProcess/swingui/R/backMSDetrend.q           |   59 
 msProcess-1.0.4/msProcess/swingui/R/backMSDisplayMSList.q     |only
 msProcess-1.0.4/msProcess/swingui/R/backMSDisplayMSSet.q      |only
 msProcess-1.0.4/msProcess/swingui/R/backMSFilterMSList.q      |only
 msProcess-1.0.4/msProcess/swingui/R/backMSFilterMSSet.q       |only
 msProcess-1.0.4/msProcess/swingui/R/backMSImport.q            |only
 msProcess-1.0.4/msProcess/swingui/R/backMSMergeMSList.q       |only
 msProcess-1.0.4/msProcess/swingui/R/backMSNoise.q             |   33 
 msProcess-1.0.4/msProcess/swingui/R/backMSNormalize.q         |   33 
 msProcess-1.0.4/msProcess/swingui/R/backMSPeak.q              |  130 
 msProcess-1.0.4/msProcess/swingui/R/backMSPrepare.q           |   26 
 msProcess-1.0.4/msProcess/swingui/R/backMSQuantify.q          |only
 msProcess-1.0.4/msProcess/swingui/R/guiUtils.q                |   55 
 msProcess-1.0.4/msProcess/swingui/R/loadMSMenu.q              |  109 
 msProcess-1.0.4/msProcess/swingui/R/loadMSProps.q             |   12 
 msProcess-1.0.4/msProcess/swingui/R/menuMSAlign.q             |    8 
 msProcess-1.0.4/msProcess/swingui/R/menuMSDenoise.q           |   37 
 msProcess-1.0.4/msProcess/swingui/R/menuMSDetrend.q           |   17 
 msProcess-1.0.4/msProcess/swingui/R/menuMSDisplayMSList.q     |only
 msProcess-1.0.4/msProcess/swingui/R/menuMSDisplayMSSet.q      |only
 msProcess-1.0.4/msProcess/swingui/R/menuMSFilterMSList.q      |only
 msProcess-1.0.4/msProcess/swingui/R/menuMSFilterMSSet.q       |only
 msProcess-1.0.4/msProcess/swingui/R/menuMSImport.q            |only
 msProcess-1.0.4/msProcess/swingui/R/menuMSMergeMSList.q       |only
 msProcess-1.0.4/msProcess/swingui/R/menuMSNoise.q             |   12 
 msProcess-1.0.4/msProcess/swingui/R/menuMSNormalize.q         |    8 
 msProcess-1.0.4/msProcess/swingui/R/menuMSPeak.q              |   98 
 msProcess-1.0.4/msProcess/swingui/R/menuMSQuantify.q          |only
 msProcess-1.0.4/msProcess/swingui/guicreate/MSDialogProps.ssc | 5523 ++++++----
 52 files changed, 4603 insertions(+), 2256 deletions(-)

More information about msProcess at CRAN
Path: /cran/updated | permanent link

New package hlr with initial version 0.0-4
Package: hlr
Type: Package
Title: Hidden Logistic Regression
Version: 0.0-4
Date: 2008-09-02
Author: Original S-PLUS code by Peter J. Rousseeuw and Andreas Christmann, R port by Tobias Verbeke
Maintainer: Tobias Verbeke,
Description: Package implementing the methods described in Rousseeuw and Christman (2003) to cope with separation issues and outliers in logistic regression
Depends: MASS
License: GPL-3
LazyData: yes
Packaged: Tue Sep 2 20:08:55 2008; tobias

More information about hlr at CRAN
Path: /cran/new | permanent link

Package ctv updated to version 0.4-4 with previous version 0.4-3 dated 2008-06-05

Author: Achim Zeileis, Kurt Hornik
Title: CRAN Task Views
Description: Server-side and client-side tools for task views to CRAN-style repositories

Diff between ctv versions 0.4-3 dated 2008-06-05 and 0.4-4 dated 2008-09-03

 DESCRIPTION                  |    6 
 NEWS                         |    5 
 R/ctv-server.R               |    9 
 inst/ctv/Bayesian.ctv        |  623 +++++++++++++++++++++----------------------
 inst/ctv/Econometrics.ctv    |    4 
 inst/ctv/Environmetrics.ctv  |  114 ++++---
 inst/ctv/MachineLearning.ctv |    3 
 inst/ctv/Optimization.ctv    |   83 +++--
 inst/ctv/Psychometrics.ctv   |   15 -
 inst/ctv/Robust.ctv          |   11 
 inst/ctv/Spatial.ctv         |   40 ++
 inst/ctv/Survival.ctv        |  112 +++++--
 inst/ctv/TimeSeries.ct       |only
 inst/ctv/gR.ctv              |   22 +
 inst/doc/ctv-howto.pdf       |binary
 15 files changed, 589 insertions(+), 458 deletions(-)

More information about ctv at CRAN
Path: /cran/updated | permanent link

New package entropy with initial version 1.0.0
Package: entropy
Version: 1.0.0
Date: 2008-09-02
Title: Entropy Estimation
Author: Jean Hauser and Korbinian Strimmer
Maintainer: Korbinian Strimmer
Depends: R (>= 2.7.0)
Suggests:
Description: This package implements various estimators of entropy, such as the shrinkage estimator by Hausser and Strimmer, the maximum likelihood and the Millow-Madow estimator, various Bayesian estimators, and the Chao-Shen estimator. It also offers an R interface to the NSB estimator.
License: GPL (>= 3)
URL: http://www.strimmerlab.org/software/entropy/
Packaged: Tue Sep 2 18:02:21 2008; strimmer

More information about entropy at CRAN
Path: /cran/new | permanent link

New package CTT with initial version 1.0
Package: CTT
Type: Package
Title: Classical Test Theory Functions
Version: 1.0
Date: 2008-08-26
Author: John T. Willse, Zhan Shu
Maintainer: John T. Willse
Description: Contains common CTT functions
License: GPL version 2 or newer
Packaged: Tue Sep 2 13:34:45 2008; jtwillse

More information about CTT at CRAN
Path: /cran/new | permanent link

Package chplot updated to version 1.3 with previous version 1.2 dated 2005-07-12

Author: Maja Pohar, Gaj Vidmar
Title: Augmented Convex Hull Plots
Description: Informative and nice plots for grouped bivariate data.

Diff between chplot versions 1.2 dated 2005-07-12 and 1.3 dated 2008-09-03

 DESCRIPTION |    6 +++---
 R/chplot.r  |   18 +++++++++++-------
 2 files changed, 14 insertions(+), 10 deletions(-)

More information about chplot at CRAN
Path: /cran/updated | permanent link

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