Author: Hadley Wickham
Title: Tools for splitting, applying and combining data
Description: plyr is a set of tools that solves a common set of problems: you need to break a big problem down into manageable pieces, operate on each pieces and then put all the pieces back together.
Diff between plyr versions 0.1 dated 2008-09-30 and 0.1.1 dated 2008-10-08
plyr-0.1.1/plyr/ANNOUNCE | 8 ++- plyr-0.1.1/plyr/DESCRIPTION | 8 +-- plyr-0.1.1/plyr/NEWS |only plyr-0.1.1/plyr/R/helper-col-wise.r | 12 ++--- plyr-0.1.1/plyr/R/ninteraction.r | 22 ++++----- plyr-0.1.1/plyr/R/ply-array.r | 43 +++++++++--------- plyr-0.1.1/plyr/R/ply-data-frame.r | 46 +++++++++---------- plyr-0.1.1/plyr/R/ply-list.r | 49 ++++++++++----------- plyr-0.1.1/plyr/R/ply-mapply.r | 60 +++++++++++++------------- plyr-0.1.1/plyr/R/ply-null.r | 45 +++++++++---------- plyr-0.1.1/plyr/R/ply-replicate.r | 24 +++++----- plyr-0.1.1/plyr/R/progress.r | 24 +++++----- plyr-0.1.1/plyr/R/quote.r | 4 - plyr-0.1.1/plyr/R/rbind.r | 4 - plyr-0.1.1/plyr/R/split.r | 20 ++++---- plyr-0.1.1/plyr/man/a-ply-2j.rd | 16 +++--- plyr-0.1.1/plyr/man/aaply-ym.rd | 16 +++--- plyr-0.1.1/plyr/man/adply-du.rd | 14 +++--- plyr-0.1.1/plyr/man/alply-wh.rd | 16 +++--- plyr-0.1.1/plyr/man/as-quoted-3f.rd | 4 - plyr-0.1.1/plyr/man/b.rd |only plyr-0.1.1/plyr/man/colwise-5m.rd | 4 - plyr-0.1.1/plyr/man/create-progress-bar-4d.rd | 8 +-- plyr-0.1.1/plyr/man/d-ply-4j.rd | 16 +++--- plyr-0.1.1/plyr/man/daply-7r.rd | 16 +++--- plyr-0.1.1/plyr/man/ddply-5k.rd | 18 +++---- plyr-0.1.1/plyr/man/dlply-7t.rd | 14 +++--- plyr-0.1.1/plyr/man/l-ply-3u.rd | 14 +++--- plyr-0.1.1/plyr/man/laply-10.rd | 14 +++--- plyr-0.1.1/plyr/man/ldply-f5.rd | 16 +++--- plyr-0.1.1/plyr/man/llply-12.rd | 14 +++--- plyr-0.1.1/plyr/man/m-ply-5z.rd | 12 ++--- plyr-0.1.1/plyr/man/maply-h2.rd | 12 ++--- plyr-0.1.1/plyr/man/mdply-cn.rd | 12 ++--- plyr-0.1.1/plyr/man/mlply-h5.rd | 12 ++--- plyr-0.1.1/plyr/man/ninteraction-vw.rd | 4 - plyr-0.1.1/plyr/man/progress-none-u0.rd | 2 plyr-0.1.1/plyr/man/progress-text-29.rd | 4 - plyr-0.1.1/plyr/man/progress-tk-qf.rd | 10 ++-- plyr-0.1.1/plyr/man/progress-win-b6.rd | 4 - plyr-0.1.1/plyr/man/r-ply-qd.rd | 10 ++-- plyr-0.1.1/plyr/man/raply-uc.rd | 8 +-- plyr-0.1.1/plyr/man/rdply-1o.rd | 8 +-- plyr-0.1.1/plyr/man/rlply-s7.rd | 8 +-- plyr-0.1.1/plyr/man/splitter-a-cs.rd | 6 +- plyr-0.1.1/plyr/man/splitter-d-cs.rd | 4 - plyr-0.1.1/plyr/plyr-doc.txt | 4 - plyr-0.1/plyr/man/dotb.rd |only 48 files changed, 348 insertions(+), 341 deletions(-)
Author: Stefan Fritsch
Title: Training of neural networks
Description: Training of neural networks using the Resilient Backpropagation with (Riedmiller, 1994) or without Weightbacktracking (Riedmiller, 1993) or the modified globally convergent version by Anastasiadis et. al. (2005). The package allows flexible settings through custom-choice of error- and activation-function. Furthermore the calculation of generalized weights (Intrator O & Intrator N, 1993) is implemented.
Diff between neuralnet versions 1.1 dated 2008-05-07 and 1.2 dated 2008-10-08
DESCRIPTION | 8 NAMESPACE | 2 R/compute.r | 8 R/confidence.interval.r |only R/gwplot.r | 9 R/neuralnet.r | 1515 ++++++++++++++++++++------------------------- R/plot.nn.r | 5 R/prediction.r |only man/compute.Rd | 6 man/confidence.interval.Rd |only man/gwplot.Rd | 2 man/neuralnet-package.Rd | 32 man/neuralnet.Rd | 47 - man/prediction.Rd |only 14 files changed, 740 insertions(+), 894 deletions(-)
Author: Edzer J. Pebesma
Title: geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator (co)simulation;
variogram and variogram map plotting utility functions.
Diff between gstat versions 0.9-50 dated 2008-10-07 and 0.9-51 dated 2008-10-08
DESCRIPTION | 6 R/fit.variogram.reml.R | 2 R/gstat.R | 5 R/predict.gstat.R | 4 R/variogram.default.R | 3 inst/doc/gstat.pdf |29611 ++++++++++++++++++++++++------------------------- man/gstat.Rd | 4 man/vgm.Rd | 13 src/glvars.c | 2 src/s.c | 8 src/version.h | 4 tests/vdist.R |only 12 files changed, 14718 insertions(+), 14944 deletions(-)
Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon
Title: graph: A package to handle graph data structures
Description: A package that implements some simple graph handling
capabilities.
Diff between graph versions 1.18.0 dated 2008-05-05 and 1.19.6 dated 2008-10-08
DESCRIPTION | 4 R/AllClasses.R | 7 R/mat2graph.R | 11 R/methods-graph.R | 107 +- data/MAPKsig.rda |binary data/apopGraph.rda |binary data/biocRepos.rda |binary data/defunctGraph.rda |only data/graphExamples.rda |binary data/integrinMediatedCellAdhesion.rda |binary data/pancrCaIni.rda |binary inst/doc/GraphClass.pdf | 1628 +++++++++++++++----------------- inst/doc/clusterGraph.pdf |binary inst/doc/graph.pdf | 1709 ++++++++++++++++------------------ inst/doc/graphAttributes.pdf |binary inst/unitTests/graphNEL_test.R | 30 man/graph-class.Rd | 6 src/graph.c | 1 18 files changed, 1766 insertions(+), 1737 deletions(-)
Author: Vince Carey
Title: An interface to the BOOST graph library
Description: A fairly extensive and comprehensive interface to the graph
algorithms contained in the BOOST library.
Diff between RBGL versions 1.16.0 dated 2008-05-05 and 1.17.2 dated 2008-10-08
DESCRIPTION | 8 NAMESPACE | 23 R/interfaces.R | 78 data/FileDep.rda |binary inst/doc/RBGL.Rnw | 2 inst/doc/RBGL.pdf | 3603 +++++++++++++++------------------ inst/dot/lkedge.Rnw | 2 man/boyerMyrvoldPlanarityTest.Rd |only man/chrobakPayneStraightLineDrawing.Rd |only man/edmondsMaxCardinalityMatching.Rd |only man/isKuratowskiSubgraph.Rd |only man/isStraightLineDrawing.Rd |only man/kolmogorovMaxFlow.Rd |only man/lengauerTarjanDominatorTree.Rd |only man/makeBiconnectedPlanar.Rd |only man/makeConnected.Rd |only man/makeMaximalPlanar.Rd |only man/maximumCycleRatio.Rd |only man/minimumCycleRatio.Rd |only man/planarCanonicalOrdering.Rd |only man/planarFaceTraversal.Rd |only man/sloanStartEndVertices.Rd |only src/boostIncl.tar.gz |binary 23 files changed, 1802 insertions(+), 1914 deletions(-)
Author: Chris Fraley and Adrian Raftery
Title: Model-Based Clustering / Normal Mixture Modeling
Description: Model-based clustering and normal mixture modeling
including Bayesian regularization
Diff between mclust versions 3.1-8 dated 2008-09-29 and 3.1-9 dated 2008-10-08
DESCRIPTION | 4 ++-- R/mclust.R | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-)
Author: Mark Stevenson
Title: Functions for analysing epidemiological data
Description: A package for analysing epidemiological data. Contains functions
for directly and indirectly adjusting measures of disease frequency,
quantifying measures of association on the basis of single or multiple
strata of count data presented in a contingency table, and computing
confidence intervals around incidence risk and incidence rate estimates.
Miscellaneous functions for use in meta-analysis, diagnostic test
interpretation, and sample size calculations.
Diff between epiR versions 0.9-10 dated 2008-08-21 and 0.9-11 dated 2008-10-08
DESCRIPTION | 6 R/epi.tests.R | 143 ++- doc/epiR.pdf | 1973 ++++++++++++++++++++++++++----------------------------- man/epi.tests.Rd | 4 4 files changed, 1055 insertions(+), 1071 deletions(-)
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter,
Tilmann Gneiting, University of Washington
With contributions from Bobby Yuen and Michael Polokowski
Title: Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
Description: Bayesian Model Averaging to create probabilistic
forecasts from ensemble forecasts and weather observations.
Diff between ensembleBMA versions 3.0-4.1 dated 2008-08-21 and 3.0-5 dated 2008-10-08
CHANGELOG |only DESCRIPTION | 4 ++-- R/brierScore.ensembleBMAgamma0.R | 14 ++++++++------ R/brierScore.ensembleBMAnormal.R | 14 ++++++++------ man/brierScore.Rd | 1 - man/ensembleData.Rd | 15 ++++++++------- man/julTOymdh.Rd | 4 ++-- 7 files changed, 28 insertions(+), 24 deletions(-)
Author: Jon T. Schnute
Title: PBS Mapping 2.59
Description: This software has evolved from fisheries research
conducted at the Pacific Biological Station (PBS) in Nanaimo,
British Columbia, Canada. It extends the R language to include
two-dimensional plotting features similar to those commonly
available in a Geographic Information System (GIS). Embedded
C code speeds algorithms from computational geometry, such as
finding polygons that contain specified point events or
converting between longitude-latitude and Universal Transverse
Mercator (UTM) coordinates. It includes data for a global
shoreline and other data sets in the public domain. The R directory
'.../library/PBSmapping/doc' includes a complete user's guide
PBSmapping-UG.pdf. To use this package effectively, please
consult the guide.
Diff between PBSmapping versions 2.57 dated 2008-07-28 and 2.59 dated 2008-10-08
DESCRIPTION | 14 R/PBSmapping.r | 23 - R/zzz.r | 11 inst/doc/ChangeLog.txt | 804 +++++++++++++++++++------------------------ inst/doc/PBSmappingIntro.Rnw | 5 inst/doc/PBSmappingIntro.pdf |binary inst/doc/index.html |only man/PBSmapping.Rd | 17 man/PolySet.Rd | 6 man/bcBathymetry.Rd | 8 man/importEvents.Rd | 12 man/importGSHHS.Rd | 14 man/joinPolys.Rd | 4 man/nepacLL.Rd | 22 - man/nepacLLhigh.Rd | 22 - man/pythagoras.Rd | 2 man/surveyData.Rd | 8 man/towData.Rd | 8 man/towTracks.Rd | 8 man/worldLL.Rd | 21 - man/worldLLhigh.Rd | 21 - 21 files changed, 474 insertions(+), 556 deletions(-)