Author: Vinzenz Erhardt
Title: Generate correlated count random variables
Description: Generate high-dimensional correlated count random variables with a prespecified Pearson correlation.
Diff between corcounts versions 1.1 dated 2008-11-13 and 1.2 dated 2008-11-27
DESCRIPTION | 6 +- NAMESPACE | 2 R/modified.cvine.alg.reg.R |only R/rcounts.R | 2 R/rcounts.reg.R |only man/c2pc.Rd | 54 ++++++++++++++++++++++- man/corcounts-package.Rd | 76 +++++++++++++++++---------------- man/modified.cvine.alg.reg.Rd |only man/pc2c.Rd | 62 ++++++++++++++++++++++++++- man/rcounts.Rd | 95 ++++++++++++++++++++---------------------- man/rcounts.reg.Rd |only 11 files changed, 201 insertions(+), 96 deletions(-)
Author: Wolfgang Breymann, David Luethi
Title: A package on the generalized hyperbolic distribution and its special cases
Description: This package provides detailed functionality for working with the univariate and multivariate Generalized Hyperbolic distribution and its special cases (Hyperbolic (hyp), Normal Inverse Gaussian (NIG), Variance Gamma (VG), skewed Student-t and Gaussian distribution). Especially, it contains fitting procedures, an AIC-based model selection routine, and functions for the computation of density, quantile, probability, random variates, expected shortfall and some portfolio optimization and plotting routines as well as the likelihood ratio test. In addition, it contains the Generalized Inverse Gaussian distribution.
Diff between ghyp versions 1.4.0 dated 2008-10-29 and 1.5.0 dated 2008-11-27
ChangeLog | 20 DESCRIPTION | 6 NAMESPACE | 1 R/ghypGIG.R | 457 + R/ghypGenericMethods.R | 107 inst/doc/Generalized_Hyperbolic_Distribution.pdf | 6674 +++++++++++------------ man/ghyp-distribution.Rd | 12 man/ghyp-internal.Rd | 16 man/ghyp-mle.ghyp-classes.Rd | 1 man/ghyp-package.Rd | 5 man/gig-distribution.Rd | 22 man/scale-methods.Rd |only man/transform-extract-methods.Rd | 25 13 files changed, 3787 insertions(+), 3559 deletions(-)
Author: Sergej Potapov
Diff between TWIX versions 0.2.4 dated 2007-11-27 and 0.2.5 dated 2008-11-27
Title: Trees WIth eXtra splits
Description: Trees with extra splits
TWIX-0.2.4/TWIX/R/Devplot.r |only
TWIX-0.2.4/TWIX/R/bagg.boottwix.r |only
TWIX-0.2.4/TWIX/R/boottwix.r |only
TWIX-0.2.4/TWIX/R/deviance.twix.r |only
TWIX-0.2.4/TWIX/R/export.r |only
TWIX-0.2.4/TWIX/R/get.splitvar.r |only
TWIX-0.2.4/TWIX/R/get.tree.r |only
TWIX-0.2.4/TWIX/R/iDevplot.R |only
TWIX-0.2.4/TWIX/R/nlogn.r |only
TWIX-0.2.4/TWIX/R/plot.twix.r |only
TWIX-0.2.4/TWIX/R/pred.value.r |only
TWIX-0.2.4/TWIX/R/predict.bootwix.r |only
TWIX-0.2.4/TWIX/R/predict_twix.R |only
TWIX-0.2.4/TWIX/R/print.padj.tree.r |only
TWIX-0.2.4/TWIX/R/print.single.tree.r |only
TWIX-0.2.4/TWIX/R/print.twix.r |only
TWIX-0.2.4/TWIX/R/sb_padj.R |only
TWIX-0.2.4/TWIX/R/sp.slave.r |only
TWIX-0.2.4/TWIX/R/splitt.r |only
TWIX-0.2.4/TWIX/R/splitt_padj.R |only
TWIX-0.2.4/TWIX/R/summary.twix.r |only
TWIX-0.2.4/TWIX/R/zzz.r |only
TWIX-0.2.4/TWIX/cleanup.sh |only
TWIX-0.2.4/TWIX/data/cancer.tsv |only
TWIX-0.2.4/TWIX/man/Dev.leaf.Rd |only
TWIX-0.2.4/TWIX/man/iDevplot.Rd |only
TWIX-0.2.4/TWIX/man/nlogn.Rd |only
TWIX-0.2.4/TWIX/man/pred.value.Rd |only
TWIX-0.2.4/TWIX/man/sp.slave.Rd |only
TWIX-0.2.5/TWIX/DESCRIPTION | 20
TWIX-0.2.5/TWIX/NAMESPACE | 13
TWIX-0.2.5/TWIX/R/Devplot.R |only
TWIX-0.2.5/TWIX/R/bagg.boottwix.R |only
TWIX-0.2.5/TWIX/R/boottwix.R |only
TWIX-0.2.5/TWIX/R/deviance.twix.R |only
TWIX-0.2.5/TWIX/R/export.R |only
TWIX-0.2.5/TWIX/R/get.splitvar.R |only
TWIX-0.2.5/TWIX/R/get.tree.R |only
TWIX-0.2.5/TWIX/R/impor.R | 63 -
TWIX-0.2.5/TWIX/R/ncmaxstat.R | 188 +--
TWIX-0.2.5/TWIX/R/nlogn.R |only
TWIX-0.2.5/TWIX/R/plot.twix.R |only
TWIX-0.2.5/TWIX/R/pred.value.R |only
TWIX-0.2.5/TWIX/R/predict.boot.R |only
TWIX-0.2.5/TWIX/R/predict.bootwix.R |only
TWIX-0.2.5/TWIX/R/predict.twix.R |only
TWIX-0.2.5/TWIX/R/print.padj.tree.R |only
TWIX-0.2.5/TWIX/R/print.single.tree.R |only
TWIX-0.2.5/TWIX/R/print.twix.R |only
TWIX-0.2.5/TWIX/R/sb.padj.R |only
TWIX-0.2.5/TWIX/R/sp.bagg.R |only
TWIX-0.2.5/TWIX/R/sp.slave.R |only
TWIX-0.2.5/TWIX/R/splitt.deviance.R |only
TWIX-0.2.5/TWIX/R/splitt.padj.R |only
TWIX-0.2.5/TWIX/R/summary.twix.R |only
TWIX-0.2.5/TWIX/R/trace.plot.R | 4
TWIX-0.2.5/TWIX/R/tuneTWIX.R | 90 -
TWIX-0.2.5/TWIX/R/twix.R | 1922 ++++++++++++++-----------------
TWIX-0.2.5/TWIX/R/zzz.R |only
TWIX-0.2.5/TWIX/clean.sh |only
TWIX-0.2.5/TWIX/man/Devplot.Rd | 31
TWIX-0.2.5/TWIX/man/bagg.default.Rd | 65 -
TWIX-0.2.5/TWIX/man/bootwix.Rd | 101 -
TWIX-0.2.5/TWIX/man/deviance.twix.Rd | 10
TWIX-0.2.5/TWIX/man/export.Rd | 15
TWIX-0.2.5/TWIX/man/fullrks.Rd | 10
TWIX-0.2.5/TWIX/man/get.splitvar.Rd | 17
TWIX-0.2.5/TWIX/man/get.tree.Rd | 10
TWIX-0.2.5/TWIX/man/olives.Rd | 6
TWIX-0.2.5/TWIX/man/plot.twix.Rd | 40
TWIX-0.2.5/TWIX/man/predict.twix.Rd | 63 -
TWIX-0.2.5/TWIX/man/print.id.tree.Rd | 4
TWIX-0.2.5/TWIX/man/print.single.tree.Rd | 25
TWIX-0.2.5/TWIX/man/print.twix.Rd | 3
TWIX-0.2.5/TWIX/man/scree.plot.Rd | 12
TWIX-0.2.5/TWIX/man/splitt.Rd | 12
TWIX-0.2.5/TWIX/man/splitt_padj.Rd |only
TWIX-0.2.5/TWIX/man/trace.plot.Rd | 34
TWIX-0.2.5/TWIX/man/tuneTWIX.Rd | 22
TWIX-0.2.5/TWIX/man/twix.Rd | 115 +
TWIX-0.2.5/TWIX/src/Devleaf.c |only
TWIX-0.2.5/TWIX/src/Devleaf.h |only
TWIX-0.2.5/TWIX/src/important.c |only
TWIX-0.2.5/TWIX/src/maxstat.c |only
TWIX-0.2.5/TWIX/src/pLausen94.c |only
TWIX-0.2.5/TWIX/src/pLausen94.h |only
TWIX-0.2.5/TWIX/src/pred.c | 143 +-
TWIX-0.2.5/TWIX/src/split-sum.c | 56
TWIX-0.2.5/TWIX/src/split-sum_cr.c | 28
TWIX-0.2.5/TWIX/src/split_cat.c | 282 +++-
TWIX-0.2.5/TWIX/src/split_cross.c | 25
TWIX-0.2.5/TWIX/src/split_rule.c | 232 +++
TWIX-0.2.5/TWIX/src/tw_table.c | 153 ++
TWIX-0.2.5/TWIX/src/tw_table.h |only
TWIX-0.2.5/TWIX/src/utils.c |only
TWIX-0.2.5/TWIX/src/utils.h |only
96 files changed, 2107 insertions(+), 1707 deletions(-)
Author: Julian Taylor
Diff between wgaim versions 0.1-2 dated 2008-07-15 and 0.2 dated 2008-11-27
Title: Whole Genome Average Interval Mapping for QTL detection using mixed models
Description: This package integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL's in linkage maps.
DESCRIPTION | 4
R/wgaim.R | 278 +++++++++++++++++++++++++++---------------------
man/link.map.cross.Rd | 7 -
man/link.map.default.Rd |only
man/link.map.wgaim.Rd | 24 ++--
man/wgaim-internal.Rd | 6 -
6 files changed, 186 insertions(+), 133 deletions(-)
Author: Robert B. Gramacy
Diff between tgp versions 2.1-5 dated 2008-10-25 and 2.1-6 dated 2008-11-27
Title: Bayesian treed Gaussian process models
Description: Bayesian nonstationary, semiparametric nonlinear regression
and design by treed Gaussian processes with jumps to the limiting
linear model (LLM). Special cases also implemented include Bayesian
linear models, CART, treed linear models, stationary separable and
isotropic Gaussian processes. Provides 1-d and 2-d plotting functions
(with projection and slice capabilities) and tree drawing, designed for
visualization of tgp-class output. Sensitivity analysis and
multi-resolution models are supported, and a limited set of experimental
design and adaptive sampling functions are also provided, including ALM,
ALC, and expected improvement.
ChangeLog | 8 +++
DESCRIPTION | 4 -
R/tgp.default.params.R | 2
demo/cat.R | 44 +++++++++++++---
demo/it.R | 129 +++++++++++++++++++++++++++++++++++++------------
src/temper.cc | 3 +
6 files changed, 149 insertions(+), 41 deletions(-)
More information about SubpathwayMiner at CRAN
Permanent link
Author: Yurii Aulchenko, Maksim Struchalin
Title: genome-wide SNP association analysis
Description: a package for genome-wide association analysis between
quantitative or binary traits and single-nucleiotide
polymorphisms (SNPs).
Diff between GenABEL versions 1.4-0 dated 2008-08-22 and 1.4-1 dated 2008-11-27
CHANGES.LOG | 902 +-- DESCRIPTION | 26 NAMESPACE | 5 R/egscore.R | 3 R/egscore.old.R |only R/hom.R | 20 R/hom.old.R |only R/ibs.R | 73 R/ibs.old.R |only R/load.gwaa.data.R | 9 R/mlreg.R | 24 R/mlreg.p.R |only R/perid.summary.R | 17 R/r2fast.R | 60 R/r2fast.old.R |only TODO | 3 inst/doc/ABEL-tutorial.pdf |12343 +++++++++++++++++++++----------------------- inst/doc/GenABEL-manual.pdf | 7509 +++++++++++++------------- man/GenABEL-package.Rd | 4 man/egscore.Rd | 6 man/egscore.old.Rd |only man/hom.Rd | 18 man/hom.old.Rd |only man/ibs.Rd | 10 man/ibs.old.Rd |only man/mlreg.Rd | 11 man/mlreg.p.Rd |only man/perid.summary.Rd | 3 man/r2fast.Rd | 6 man/r2fast.old.Rd |only src/gwaa.c | 231 src/lm_gwaa.cpp | 9 src/merge.snp.data.cpp | 242 33 files changed, 10964 insertions(+), 10570 deletions(-)