Author: Achim Zeileis, Kurt Hornik
Title: CRAN Task Views
Description: Server-side and client-side tools for task views
to CRAN-style repositories
Diff between ctv versions 0.4-7 dated 2008-12-09 and 0.4-8 dated 2009-01-22
DESCRIPTION | 6 R/ctv-server.R | 9 inst/ctv/ChemPhys.ctv | 837 ++++++++++++++++----------------- inst/ctv/Econometrics.ctv | 2 inst/ctv/ExperimentalDesign.ctv | 11 inst/ctv/Finance.ctv | 1 inst/ctv/HighPerformanceComputing.html |only inst/ctv/MachineLearning.ctv | 21 inst/ctv/SocialSciences.ctv | 11 inst/ctv/Spatial.ctv | 19 inst/doc/ctv-howto.Rnw | 11 inst/doc/ctv-howto.pdf |binary 12 files changed, 492 insertions(+), 436 deletions(-)
Author: Eric Kort
Title: A tiff reader for R.
Description: This package will read (and, as of version 1.1, write) TIFF format images and return them as a pixmap object. Because the resulting object can be very large for even modestly sized TIFF images, images can be reduced as they are read for improved performance. This package is a wrapper around libtiff (www.libtiff.org), on which it depends (i.e. the libtiff shared library must be on your PATH for the binary to work, and tiffio.h must be on your system to build the package from source). By using libtiff's highlevel TIFFReadRGBAImage function, this package inherently support a wide range of image formats and compression schemes. This package also provides an implementation of the Ridler Autothresholding algorithm for easy generation of binary masks.
Diff between rtiff versions 1.1 dated 2006-12-06 and 1.4 dated 2009-01-22
DESCRIPTION | 10 +++---- LICENSE |only NAMESPACE | 2 + R/getDescription.R |only R/updateDescription.R |only man/autoThreshold.Rd | 2 - man/getDescription.Rd |only man/newPixmapRGB.Rd | 2 - man/rtiff.package.Rd | 2 - man/updateDescription.Rd |only src/rtiff.c | 61 +++++++++++++++++++++++++++++++++++++++++++++-- src/tiff.h |only src/tiffconf.h |only src/tiffio.h |only src/tiffvers.h |only 15 files changed, 69 insertions(+), 10 deletions(-)
Author: Alexander Kowarik
Diff between x12 versions 0.0-4 dated 2009-01-20 and 0.0-5 dated 2009-01-22
Title: X12 - wrapper function and GUI
Description: A wrapper function and GUI for the X12 binaries under windows
DESCRIPTION | 6 +++---
R/x12.R | 12 +++++++-----
man/x12.Rd | 4 ++--
3 files changed, 12 insertions(+), 10 deletions(-)
Author: Klaus Schliep
Title: Phylogenetic analysis in R
Description: Phylogenetic analysis in R (Estimation of phylogenetic
trees and networks using Maximum Likelihood, Maximum Parsimony,
Distance methods & Hadamard conjugation)
Diff between phangorn versions 0.0-4 dated 2008-12-22 and 0.0-5 dated 2009-01-22
Changes | 9 ++ DESCRIPTION | 7 +- NAMESPACE | 8 +- R/phylo.R | 196 ++++++++++++++++----------------------------------------- data/lg.dat | 42 ++++++------ src/init.c | 1 src/phangorn.c | 61 +++++++++++++++++ src/phangorn.h | 2 8 files changed, 159 insertions(+), 167 deletions(-)
Author: Christine Porzelius, Harald Binder
Title: Parallelised Estimation of Prediction Error
Description: Package peperr is designed for prediction error estimation through resampling techniques, possibly accelerated by parallel execution on a compute cluster. Newly developed model fitting routines can be easily incorporated.
Diff between peperr versions 1.1-1 dated 2008-12-18 and 1.1-2 dated 2009-01-22
DESCRIPTION | 4 ++-- R/peperr.R | 12 +++++++++--- changeLog | 4 ++++ man/peperr.Rd | 10 ++++++---- man/perr.Rd | 12 ++++++------ 5 files changed, 27 insertions(+), 15 deletions(-)
Author: Moritz Gschwandtner
Diff between mvoutlier versions 1.3 dated 2007-05-16 and 1.4 dated 2009-01-22
Title: Multivariate outlier detection based on robust methods
Description: This packages was made for multivariate outlier detection.
DESCRIPTION | 22 ++--
R/chisq.plot.R | 27 +++--
R/map.plot.R | 3
man/aq.plot.Rd | 4
man/arw.Rd | 4
man/bhorizon.Rd | 97 ++++++++++-----------
man/bss.background.Rd | 2
man/chisq.plot.Rd | 12 +-
man/chorizon.Rd | 221 ++++++++++++++++++++++++-------------------------
man/color.plot.Rd | 4
man/dd.plot.Rd | 4
man/humus.Rd | 89 +++++++++----------
man/kola.background.Rd | 5 -
man/map.plot.Rd | 4
man/moss.Rd | 69 +++++++--------
man/pcout.Rd | 7 -
man/pkb.Rd | 3
man/sign1.Rd | 7 -
man/sign2.Rd | 11 +-
man/symbol.plot.Rd | 4
man/uni.plot.Rd | 4
21 files changed, 309 insertions(+), 294 deletions(-)
Author: Lixin Gong, William Constantine, and Yu Alex Chen
Title: Protein Mass Spectra Processing
Description: This package provides tools for protein mass spectra processing
including data preparation, denoising, noise estimation, baseline correction,
intensity normalization, peak detection, peak alignment, peak quantification,
and various functionalities for data ingestion/conversion, mass calibration,
data quality assessment, and protein mass spectra simulation.
It also provides auxiliary tools for data representation, data visualization,
and pipeline processing history recording and retrieval.
Diff between msProcess versions 1.0.4 dated 2008-09-03 and 1.0.5 dated 2009-01-22
DESCRIPTION | 42 +++++++++++++++++++-------------------- R/zzz.R | 3 +- inst/doc |only man/calibrants.Rd | 2 - man/calibrator.Rd | 2 - man/dbimportBin2Sqlite.Rd | 2 - man/ion.focus.delay.Rd | 2 - man/msAlign.Rd | 10 ++++----- man/msDenoise.Rd | 4 +-- man/msDenoiseMRD.Rd | 6 ++--- man/msDenoiseWavelet.Rd | 6 ++--- man/msDenoiseWaveletThreshold.Rd | 2 - man/msDetrend.Rd | 4 +-- man/msList.Rd | 7 ++---- man/msNoise.Rd | 4 +-- man/msNormalize.Rd | 4 +-- man/msNormalizeSNV.Rd | 6 ++--- man/msNormalizeTIC.Rd | 2 - man/msPeakCWT.Rd | 4 +-- man/msPeakMRD.Rd | 2 - man/msPeakSearch.Rd | 6 ++--- man/msPeakSimple.Rd | 2 - man/msQualify.Rd | 6 ++--- man/msQuantify.Rd | 8 +++---- man/msQuantifyCount.Rd | 8 +++---- man/msQuantifyIntensity.Rd | 8 +++---- man/msSmoothMRD.Rd | 2 - man/msSmoothMonotone.Rd | 2 - man/proteins.Rd | 2 - man/qclist.Rd | 15 ++++++------- man/qcset.Rd | 8 +++---- man/setting.Rd | 2 - man/spectrometer.Rd | 2 - man/spectrum.Rd | 2 - 34 files changed, 93 insertions(+), 94 deletions(-)
Author: Robin K. S. Hankin
Title: create and investigate magic squares
Description: a collection of efficient, vectorized algorithms for the
creation and investigation of magic squares and hypercubes, including
a variety of functions for the manipulation and analysis of
arbitrarily dimensioned arrays. The package includes methods for
creating normal magic squares of any order greater than 2. The
ultimate intention is for the package to be a computerized embodiment
all magic square knowledge, including direct numerical verification
of properties of magic squares (such as recent results on the
determinant of odd-ordered semimagic squares). Some antimagic
functionality is included. The package also
serves as a rebuttal to the often-heard comment "I thought R
was just for statistics".
Diff between magic versions 1.4-2 dated 2009-01-20 and 1.4-3 dated 2009-01-22
magic-1.4-2/magic/inst/doc/jss.bst |only magic-1.4-2/magic/inst/doc/jss.cls |only magic-1.4-2/magic/inst/doc/jsslogo.jpg |only magic-1.4-3/magic/DESCRIPTION | 4 magic-1.4-3/magic/R/magic.R | 15 magic-1.4-3/magic/inst/doc/magicpaper.Rnw | 10 magic-1.4-3/magic/inst/doc/magicpaper.pdf | 2147 ++++++++++++++---------------- magic-1.4-3/magic/inst/doc/magicpaper.tex |only magic-1.4-3/magic/man/hadamard.Rd |only magic-1.4-3/magic/man/is.ok.Rd | 4 magic-1.4-3/magic/man/notmagic.2n.Rd | 2 11 files changed, 1033 insertions(+), 1149 deletions(-)
Author: Jeff Hallman
Diff between fame versions 2.4 dated 2009-01-01 and 2.5 dated 2009-01-22
Title: Interface for FAME time series database
Description: Read and write FAME databases.
DESCRIPTION | 4 ++--
NEWS | 5 +++++
R/fame.R | 12 +++++++++---
3 files changed, 16 insertions(+), 5 deletions(-)
Author: Robin K. S. Hankin
Title: elliptic functions
Description:
A suite of elliptic and related functions including Weierstrass and
Jacobi forms. Also includes various tools for manipulating and
visualizing complex functions.
Diff between elliptic versions 1.2-2 dated 2009-01-20 and 1.2-3 dated 2009-01-22
elliptic-1.2-2/elliptic/inst/doc/jss.bst |only elliptic-1.2-2/elliptic/inst/doc/jss.cls |only elliptic-1.2-2/elliptic/inst/doc/jsslogo.jpg |only elliptic-1.2-3/elliptic/DESCRIPTION | 4 elliptic-1.2-3/elliptic/inst/doc/ellipticpaper.pdf |13971 ++++++++++----------- elliptic-1.2-3/elliptic/man/K.fun.Rd | 4 elliptic-1.2-3/elliptic/man/WeierstrassP.Rd | 8 elliptic-1.2-3/elliptic/man/e16.28.1.Rd | 2 elliptic-1.2-3/elliptic/man/e18.10.9.Rd | 9 elliptic-1.2-3/elliptic/man/e1e2e3.Rd | 10 elliptic-1.2-3/elliptic/man/fpp.Rd | 6 elliptic-1.2-3/elliptic/man/latplot.Rd | 3 elliptic-1.2-3/elliptic/man/newton.rapheson.Rd | 6 elliptic-1.2-3/elliptic/man/nome.Rd | 6 elliptic-1.2-3/elliptic/man/theta.Rd | 6 elliptic-1.2-3/elliptic/man/theta1.dash.zero.Rd | 4 16 files changed, 6875 insertions(+), 7164 deletions(-)
Author: Jake Bowers
Diff between RItools versions 0.1-4 dated 2008-12-18 and 0.1-5 dated 2009-01-22
Title: Randomization inference tools
Description: Tools for randomization inference.
DESCRIPTION | 6 +++---
R/print.xbal.R | 33 +++++++++++++++++++--------------
R/xBalanceEngine.R | 4 ++--
ToDo | 14 +++++++++++---
man/xBalance.Rd | 17 ++++++++---------
5 files changed, 43 insertions(+), 31 deletions(-)
Author: Robin K. S. Hankin
Title: Bayesian Analysis of Computer Code Output
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