Author: Martyn Plummer
Title: Bayesian graphical models using MCMC
Description: Interface to the JAGS MCMC library
Diff between rjags versions 1.0.3-7 dated 2009-03-06 and 1.0.3-8 dated 2009-03-10
DESCRIPTION | 6 +++--- NAMESPACE | 3 ++- R/dic.R | 4 ++-- R/jags.R | 16 ++++++++-------- R/jags.object.R | 23 +++++++++++++---------- man/adapt.Rd |only man/coda.samples.Rd | 4 +++- man/dic.samples.Rd | 4 +++- man/jags.model.Rd | 7 +++---- man/jags.object.Rd | 34 ++++------------------------------ man/model.samples.Rd | 4 +++- man/update.Rd |only 12 files changed, 44 insertions(+), 61 deletions(-)
Author: Thomas Hoffmann
Diff between pbatR versions 2.1.2.1 dated 2009-02-23 and 2.1.4 dated 2009-03-10
Title: P2BAT
Description: This package provides data analysis via the pbat program, and an alternative internal implementation of the power calculations via simulation only. For analysis, this package provides a frontend to the PBAT software, automatically reading in the output from the pbat program and displaying the corresponding figure when appropriate (i.e. PBAT-logrank). It includes support for multiple processes and clusters. For analysis, users must download PBAT (developed by Christoph Lange) and accept it's license, available on the PBAT webpage. Both the data analysis and power calculations have command line and graphical interfaces using tcltk.
DESCRIPTION | 14 +++----
NAMESPACE | 2 +
R/cped.R | 16 +++++++-
R/createCommandfile.R | 4 ++
R/ped.R | 13 ++++++
man/cped.Rd | 93 +++++++++++++++++++++++++++++++++++++++++---------
man/ped.Rd | 5 ++
man/power.Rd | 6 +--
8 files changed, 125 insertions(+), 28 deletions(-)
Author: Thomas Hoffmann
Diff between fbati versions 0.5.2.1 dated 2009-02-23 and 0.6.1 dated 2009-03-10
Title: Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families
Description: Does family-based gene by environment interaction tests, joint gene, gene-environment interaction test, and a test of a set of genes conditional on another set of genes.
.project |only
DESCRIPTION | 18 +++++++++---------
NAMESPACE | 5 +++++
R/cgFbatCode.R |only
R/cgFbatInstall.R |only
R/cgFbatRun.R |only
R/fbatShell.R |only
R/fbatcStrategyStep.R |only
R/ibatGUI.R | 2 +-
R/jbatGUI.R | 2 +-
R/launchPad.R | 10 ++++++++++
R/namespc.R | 2 +-
man/fbatc.Rd |only
man/fbatcStrategyStep.Rd |only
man/fbati.Rd | 2 +-
man/fbatj.Rd | 2 +-
man/launchpad.Rd | 2 +-
man/strataReduce.Rd | 21 +++++++++++++++++----
src/cgFbat.cpp |only
src/datamatrix.cpp | 4 ++--
src/datamatrix.h | 2 +-
src/defines.h | 6 +++++-
src/fbati.cpp | 11 +++++++++--
src/joint.cpp | 13 ++++++++-----
src/rmatrix.cpp | 12 ++++++------
src/rmatrix.h | 4 ++--
src/rvector.cpp | 12 ++++++------
src/rvector.h | 4 ++--
28 files changed, 88 insertions(+), 46 deletions(-)
Author: Gavin L. Simpson, Jari Oksanen
Title: Analogue and weighted averaging methods for palaeoecology
Description: Fits Modern Analogue Technique and Weighted Averaging transfer
function models for prediction of environmental data from species
data, and related methods used in palaeoecology.
Diff between analogue versions 0.5-2 dated 2008-05-13 and 0.6-6 dated 2009-03-10
DESCRIPTION | 10 + R/Stratiplot.R |only R/Stratiplot.formula.R |only R/analog.R | 43 +++---- R/bayesF.R | 125 +++++++++++------------ R/dissimilarities.R | 4 R/distance.R | 40 +++---- R/fuse.R |only R/fuse.dist.R |only R/fuse.matrix.R |only R/head.join.R |only R/internal.R | 28 +++++ R/logitreg.R |only R/logitreg.analog.R |only R/mat.R | 37 +++--- R/optima.R |only R/panel.Loess.R |only R/panel.Stratiplot.R |only R/plot.bayesF.R | 66 ++++++++++-- R/plot.logitreg.R |only R/plot.mcarlo.R | 110 ++++++++++---------- R/plot.roc.R | 226 +++++++++++++++++++++--------------------- R/predict.wa.R | 48 ++++++++ R/print.roc.R |only R/print.summary.roc.R |only R/reconPlot.R | 49 ++++----- R/roc.R | 189 +++++++++++++++-------------------- R/summary.logitreg.R |only R/summary.mat.R | 4 R/summary.roc.R |only R/tail.join.R |only R/tolerance.R |only R/tran.R |only R/wa.R | 61 ++++++++++- R/wa.formula.R | 4 R/zzz.R | 9 - data/Biome.rda |only data/Climate.rda |only data/ImbrieKipp.rda |only data/Location.rda |only data/Pollen.rda |only data/Salinity.rda |only data/SumSST.rda |only data/V12.122.rda |only data/WinSST.rda |only inst/CITATION | 33 ++++-- inst/ChangeLog | 163 ++++++++++++++++++++++++++++++ inst/THANKS | 16 ++ inst/TODO | 14 +- inst/doc/analogue_methods.pdf |binary man/ImbrieKipp.Rd |only man/Pollen.Rd |only man/Stratiplot.Rd |only man/analogue-internal.Rd | 2 man/bayesF.Rd | 42 ++++--- man/bootstrap.Rd | 16 +- man/bootstrapObject.Rd | 55 +++++----- man/dissimilarities.Rd | 12 +- man/distance.Rd | 25 ++-- man/fuse.Rd |only man/getK.Rd | 12 -- man/join.Rd | 35 ++++++ man/logitreg.Rd |only man/mat.Rd | 39 ++++--- man/mcarlo.Rd | 13 +- man/minDC.Rd | 16 +- man/optima.Rd |only man/panel.Loess.Rd |only man/panel.Stratiplot.Rd |only man/plot.logitreg.Rd |only man/plot.mat.Rd | 14 +- man/plot.roc.Rd | 5 man/predict.wa.Rd | 20 ++- man/roc.Rd | 77 ++++++++------ man/summary.bootstrap.mat.Rd | 102 ++++++++++-------- man/tran.Rd |only man/wa.Rd | 60 ++++++++++- 77 files changed, 1158 insertions(+), 666 deletions(-)
Author: Yu-Sung Su
Diff between R2jags versions 0.01-18 dated 2009-03-08 and 0.01-20 dated 2009-03-10
Title: A Package for Running jags from R
Description: Using this package to call jags from R.
CHANGELOG | 13 +++++++++----
DESCRIPTION | 8 ++++----
R/autojags.R | 6 +++---
R/jags.R | 12 +++++++-----
R/jags2.R | 2 +-
R/recompile.R | 6 +++---
R/update.R | 4 ++--
man/autojags.Rd | 5 +++--
man/jags.Rd | 2 +-
man/recompile.Rd | 5 +++--
10 files changed, 36 insertions(+), 27 deletions(-)
Author: S. Déjean and S. Cohen
Title: Simulation of Lévy motions
Description: The functions provided in FracSim perform simulation of one- and two-dimensional fractional and multifractional Lévy motions
Diff between FracSim versions 0.2 dated 2005-12-02 and 0.3 dated 2009-03-10
DESCRIPTION | 7 ++++--- man/fracsim.1d.Rd | 1 + man/fracsim.2d.Rd | 3 ++- 3 files changed, 7 insertions(+), 4 deletions(-)
Author: Jan de Leeuw, Patrick Mair
Title: smacof for Multidimensional Scaling.
Description: This package provides the following approaches of multidimensional scaling (MDS) based on stress minimization by means of majorization (smacof): Simple smacof on symmetric dissimilarity matrices, smacof for rectangular matrices (unfolding models), smacof with constraints on the configuration, three-way smacof for individual differences (including constraints for idioscal, indscal, and identity), and spherical smacof (primal and dual algorithm). Each of these approaches is implemented in a metric and nonmetric manner including primary, secondary, and tertiary approaches for tie handling.
Diff between smacof versions 0.9-3 dated 2009-02-07 and 0.9-5 dated 2009-03-10
DESCRIPTION | 6 +++--- NAMESPACE | 2 ++ R/plot.smacof.R | 5 ++--- R/plot.smacofID.r | 8 +++----- R/plot3d.smacof.r | 2 +- R/plot3d.smacofID.r | 2 +- R/plot3d.smacofR.r | 2 +- R/print.smacofID.R | 1 - R/smacofConstraint.R | 14 ++++++++++---- R/smacofIndDiff.R | 24 ++++++++++++++++++------ R/smacofRect.R | 13 +++++++++++-- R/smacofSphere.dual.R | 17 +++++++++++++---- R/smacofSphere.primal.R | 12 +++++++++--- R/smacofSym.R | 17 ++++++++++++----- inst |only man/plot.smacof.rd | 5 ++--- man/plot3d.smacof.rd | 10 +++++----- man/smacof-package.Rd | 4 ++-- man/smacofIndDiff.Rd | 1 - man/smacofSphere.dual.rd | 1 + 20 files changed, 96 insertions(+), 50 deletions(-)
More information about spatialsegregation at CRAN
Permanent link
Author: Terry M Therneau and Beth Atkinson
Diff between rpart versions 3.1-42 dated 2008-10-20 and 3.1-43 dated 2009-03-10
Title: Recursive Partitioning
Description: Recursive partitioning and regression trees
ChangeLog | 9 +++++++--
DESCRIPTION | 6 +++---
R/plotcp.s | 6 +++---
R/rpart.s | 12 +++++++++---
man/rpart.control.Rd | 2 +-
man/snip.rpart.Rd | 2 +-
tests/testall.Rout.save | 2 +-
7 files changed, 25 insertions(+), 14 deletions(-)
Author: S. M. Iacus
Title: Iterated Function Systems
Description: Iterated Function Systems
Diff between ifs versions 0.1-2 dated 2006-09-19 and 0.1-3 dated 2009-03-10
DESCRIPTION | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-)
Author: Chong Gu
Diff between gss versions 1.0-4 dated 2009-03-06 and 1.0-5 dated 2009-03-10
Title: General Smoothing Splines
Description: A comprehensive package for structural multivariate
function estimation using smoothing splines.
ChangeLog | 6 ++++++
DESCRIPTION | 4 ++--
R/rkpk.R | 16 ++++++++--------
3 files changed, 16 insertions(+), 10 deletions(-)
Author: S original by Venables & Ripley.
R port by Brian Ripley
Diff between VR versions 7.2-45 dated 2008-12-10 and 7.2-46 dated 2009-03-10
Bundle: VR
Contains: MASS class nnet spatial
DESCRIPTION | 8
MASS/NAMESPACE | 3
MASS/R/add.R | 84 ++---
MASS/R/boxcox.R | 20 -
MASS/R/confint.R | 6
MASS/R/contr.sdif.R | 10
MASS/R/corresp.R | 70 ++--
MASS/R/cov.trob.R | 3
MASS/R/dose.p.R | 4
MASS/R/eqscplot.R | 22 -
MASS/R/fitdistr.R | 22 -
MASS/R/fractions.R | 2
MASS/R/gamma.shape.R | 4
MASS/R/glmmPQL.R | 14
MASS/R/hist.scott.R | 4
MASS/R/isoMDS.R | 2
MASS/R/kde2d.R | 10
MASS/R/lda.R | 88 +++---
MASS/R/lm.gls.R | 2
MASS/R/lm.ridge.R | 4
MASS/R/loglm.R | 78 ++---
MASS/R/logtrans.R | 20 -
MASS/R/lqs.R | 20 -
MASS/R/mca.R | 22 -
MASS/R/misc.R | 8
MASS/R/mvrnorm.R | 4
MASS/R/neg.bin.R | 24 +
MASS/R/negbin.R | 54 ++-
MASS/R/negexp.R | 18 -
MASS/R/parcoord.R | 10
MASS/R/polr.R | 92 +++---
MASS/R/profiles.R | 30 +-
MASS/R/qda.R | 56 +--
MASS/R/rlm.R | 52 +--
MASS/R/rms.curv.R | 10
MASS/R/stepAIC.R | 32 +-
MASS/R/truehist.R | 6
MASS/R/write.matrix.R | 10
MASS/inst/NEWS | 1
MASS/man/Insurance.Rd | 8
MASS/man/VA.Rd | 2
MASS/man/glm.nb.Rd | 2
MASS/man/loglm.Rd | 2
MASS/man/rlm.Rd | 2
MASS/man/whiteside.Rd | 2
MASS/tests/glm.nb.R | 9
WHATS.NEW | 2
class/R/SOM.R | 6
class/R/lvq.R | 4
nnet/R/multinom.R | 702 +++++++++++++++++++++++++-------------------------
nnet/R/nnet.R | 6
nnet/R/vcovmultinom.R | 14
nnet/inst/NEWS | 1
nnet/man/nnet.Rd | 2
spatial/R/kr.R | 10
spatial/R/pp.R | 4
56 files changed, 886 insertions(+), 821 deletions(-)
Author: Harold C. Doran
Title: Miscellaneous Psychometrics
Description: Computes statistical analyses useful for applied psychometricians
Diff between MiscPsycho versions 1.3 dated 2008-10-02 and 1.4 dated 2009-03-10
MiscPsycho-1.3/MiscPsycho/inst/doc/Levenshtein.pdf |only MiscPsycho-1.4/MiscPsycho/DESCRIPTION | 6 ++--- MiscPsycho-1.4/MiscPsycho/R/cheat.R |only MiscPsycho-1.4/MiscPsycho/man/cheat.Rd |only MiscPsycho-1.4/MiscPsycho/man/class.acc.Rd | 23 ++++++++++++--------- MiscPsycho-1.4/MiscPsycho/man/pb.Rd | 2 - MiscPsycho-1.4/MiscPsycho/man/posterior.Rd | 19 ++++++++++------- MiscPsycho-1.4/MiscPsycho/man/stringMatch.Rd | 2 - 8 files changed, 31 insertions(+), 21 deletions(-)
Author: Yuanhui Xiao
Diff between CvM2SL2Test versions 0.0-1 dated 2008-08-08 and 0.0-2 dated 2009-03-10
Title: Cramer-von Mises Two Sample Tests
Description: The package contains two functions: one computes the Cramer-von Mises
two sample test scores, the other cmoputes the exact p-value(s) for given
Cramer-von Mises two-sample test score(s) under the assumption that
the populations under comparison have the same probability distribution.
Like Kolmogorov-Smirnov two-sample test, Cramer-von Mises test
is also distribution free. In certain cases, the Cramer-von Mises test
is more powerful than the Kolmogorov-Smirnov test, but it is less widely
used than the latter.
DESCRIPTION | 8 ++++----
NAMESPACE | 2 +-
man/cvmts.pval.Rd | 5 ++---
man/cvmts.test.Rd | 2 +-
src/CvM2SL2Test.cc | 3 ++-
src/XCVM.cc | 6 +++---
src/XCVM.h | 9 +++++----
src/XCVMTailProb.cc | 2 +-
src/XCVMTailProb.h | 2 +-
src/XCVMTailProb_EQ.cc | 6 +++---
src/XCVMTailProb_EQ.h | 2 +-
src/XCVMTailProb_NE1.cc | 4 ++--
src/XCVMTailProb_NE1.h | 2 +-
src/XCVMTailProb_NE2.cc | 2 +-
src/XCVMTailProb_NE2.h | 2 +-
src/XCvMTest.cc | 2 +-
src/XFreqFunct.cc | 25 +++++++++++++------------
src/XFreqFunct.h | 27 ++++++++++++++-------------
18 files changed, 57 insertions(+), 54 deletions(-)