Author: Sebastian Kaiser, Rodrigo Santamaria, Roberto Theron, Luis
Quintales and Friedrich Leisch.
Title: BiCluster Algorithms
Description: The main function biclust provides several algorithms to
find biclusters in two-dimensional data: Cheng and Church,
Spectral, Plaid Model, Xmotifs and Bimax. In addition, the
package provides methods for data preprocessing (normalization
and discretisation), visualisation, and validation of bicluster
solutions.
Diff between biclust versions 0.5 dated 2008-02-04 and 0.7.1 dated 2009-03-13
DESCRIPTION | 31 ++++--- NAMESPACE | 10 +- NEWS | 3 R/aaa-biclust.r | 65 ++++++++++----- R/bimax.r | 24 ++++- R/clustmember.r |only R/drawHeatmap.r | 112 +++++++++++++------------- R/drawHeatmap2.r |only R/gibbs.r |only R/helpers.r | 192 ++++++++++++++++++++++++++++++++++++++++++++- R/parallelCoordinates.r | 97 +++++++++++++++++----- R/qhb.r |only R/questmotif.r |only R/spectral.r | 8 - man/BCBimax.rd | 4 man/BCQuest.rd |only man/BCSpectral.Rd | 10 +- man/Biclust.rd | 2 man/BiclustMethod.rd | 6 - man/biclust-method.rd | 2 man/binarize.Rd | 8 + man/bubbleplot.Rd | 6 - man/clustmember.rd |only man/drawHeatmap.Rd | 19 +++- man/parallelCoordinates.Rd | 22 +++-- man/plotclust.rd |only man/writeclust.rd |only 27 files changed, 469 insertions(+), 152 deletions(-)
Author: John Fox
Title: R Commander Plug-in for the survival Package
Description: This package provides an R Commander plug-in for the
survival package, with dialogs for Cox models, parametric
survival regression models, estimation of survival curves, and
testing for differences in survival curves, along with
data-management facilities and a variety of tests, diagnostics
and graphs.
Diff between RcmdrPlugin.survival versions 0.7-0 dated 2009-02-20 and 0.7-1 dated 2009-03-13
DESCRIPTION | 41 ++++++++-------- inst/CHANGES | 10 +++- inst/etc/menus.txt | 19 ------- inst/po/fr |only inst/po/pt_BR/LC_MESSAGES/R-RcmdrPlugin.survival.mo |binary inst/po/ru |only man/RcmdrPlugin.survival-package.Rd | 10 ++-- po/R-RcmdrPlugin.survival.pot | 50 +++++++++++++++++++- po/R-fr.po |only po/R-pt_BR.po | 47 ++++++++++++++++++ po/R-ru.po |only 11 files changed, 132 insertions(+), 45 deletions(-)
More information about RcmdrPlugin.survival at CRAN
Permanent link
Author: John Fox
Diff between Rcmdr versions 1.4-7 dated 2009-01-08 and 1.4-8 dated 2009-03-13
Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical
user interface) for R, based on the tcltk package.
DESCRIPTION | 40 +++++++++++++--------
R/commander.R | 13 +++----
R/data-menu.R | 86 +++++++++++++++++++++++++----------------------
R/utilities.R | 76 ++++++++++++++++++++++++++++++++++-------
inst/CHANGES | 12 ++++++
inst/etc/Rcmdr-menus.txt | 6 +--
inst/etc/linux |only
man/Commander.Rd | 7 +--
man/Rcmdr-package.Rd | 4 +-
9 files changed, 161 insertions(+), 83 deletions(-)
Author: Walter R. Mebane, Jr.
Diff between rgenoud versions 5.4-7 dated 2008-01-07 and 5.5-1 dated 2009-03-13
Title: R version of GENetic Optimization Using Derivatives
Description: A genetic algorithm plus derivative optimizer
DESCRIPTION | 14 +-
man/genoud.Rd | 341 +++++++++++++++++++++++++-------------------------
src/evaluate.cpp | 12 -
tests/tests.Rout.save | 44 +++---
4 files changed, 209 insertions(+), 202 deletions(-)
Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto, Steve
Ellner, Bruce Kendall
Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes
Diff between pomp versions 0.22-5 dated 2009-02-04 and 0.22-6 dated 2009-03-13
DESCRIPTION | 13 ++++++++----- data/ou2.rda |binary inst/CITATION |only inst/ChangeLog | 10 +++++++++- inst/doc/Rplots.pdf | 4 ++-- inst/doc/compiled_code_in_pomp.pdf |binary inst/doc/intro_to_pomp.pdf |binary man/eulermultinom.Rd | 5 +++-- src/eulermultinom.c | 4 ++-- 9 files changed, 24 insertions(+), 12 deletions(-)
Author: Aaron A. King
Diff between ouch versions 2.5-3 dated 2009-01-30 and 2.5-4 dated 2009-03-13
Title: Ornstein-Uhlenbeck models for phylogenetic comparative
hypotheses
Description: Fit and compare Ornstein-Uhlenbeck models for evolution
along a phylogenetic tree.
DESCRIPTION | 19 ++++++++++++-------
inst/CITATION | 8 ++++----
inst/ChangeLog | 11 +++++++++++
man/hansen.Rd | 31 +++++++++++++++++++++++--------
man/hansentree-methods.Rd | 4 ++--
5 files changed, 52 insertions(+), 21 deletions(-)
Author: John Verzani. Based on the iwidgets code of Simon Urbanek and
suggestions by Simon Urbanek, Philippe Grosjean and Michael
Lawrence
Title: gWidgets API for building toolkit-independent, interactive GUIs
Description: gWidgets provides a toolkit-independent API for building
interactive GUIs. Atleast one of the gWidgetsXXX packages, such
as gWidgetstcltk, needs to be installed. Some icons are on loan
from the scigraphica project
http://scigraphica.sourceforge.net.
Diff between gWidgets versions 0.0-32 dated 2008-12-18 and 0.0-35 dated 2009-03-13
gWidgets-0.0-32/gWidgets/inst/doc/addingToolkit.pdf.r207 |only gWidgets-0.0-32/gWidgets/inst/doc/addingToolkit.pdf.r214 |only gWidgets-0.0-32/gWidgets/inst/doc/gWidgets.pdf.r207 |only gWidgets-0.0-32/gWidgets/inst/doc/gWidgets.pdf.r214 |only gWidgets-0.0-35/gWidgets/ChangeLog | 18 gWidgets-0.0-35/gWidgets/DESCRIPTION | 16 gWidgets-0.0-35/gWidgets/R/aaaGenerics.R | 10 gWidgets-0.0-35/gWidgets/R/gcommandline.R | 123 - gWidgets-0.0-35/gWidgets/R/ggenericwidget.R | 46 gWidgets-0.0-35/gWidgets/R/zzz.R | 7 gWidgets-0.0-35/gWidgets/TODO.txt | 3 gWidgets-0.0-35/gWidgets/inst/doc/addingToolkit.pdf |binary gWidgets-0.0-35/gWidgets/inst/doc/gWidgets.pdf | 1197 +++++++-------- gWidgets-0.0-35/gWidgets/inst/doc/gWidgets.pdf.3.mine |only gWidgets-0.0-35/gWidgets/man/gWidgets-handlers.Rd | 4 gWidgets-0.0-35/gWidgets/man/gWidgets-methods.Rd | 433 ++--- gWidgets-0.0-35/gWidgets/man/gdf.Rd | 2 gWidgets-0.0-35/gWidgets/man/ggenericwidget.Rd | 3 gWidgets-0.0-35/gWidgets/man/gmenu.Rd | 2 19 files changed, 964 insertions(+), 900 deletions(-)
Author: Andy Bunn
Title: Dendrochronology Program Library in R
Description: This package contains functions for performing some
standard tree-ring analyses.
Diff between dplR versions 1.1.6 dated 2009-01-01 and 1.1.7 dated 2009-03-13
DESCRIPTION | 27 +++++++++++++++------------ R/read.rwl.R | 18 ++++++++++++++---- 2 files changed, 29 insertions(+), 16 deletions(-)
Author: Douglas Bates
Diff between Matrix versions 0.999375-21 dated 2009-02-15 and 0.999375-22 dated 2009-03-13
Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
ChangeLog | 73 ++++
DESCRIPTION | 22 -
Done | 6
NAMESPACE | 1
R/Auxiliaries.R | 5
R/Csparse.R | 2
R/Matrix.R | 32 +-
R/Ops.R | 134 +++++---
R/Tsparse.R | 9
R/bandSparse.R |only
R/dMatrix.R | 44 +-
R/ddenseMatrix.R | 5
R/dgeMatrix.R | 2
R/diagMatrix.R | 51 ++-
R/sparseMatrix.R | 5
TODO | 10
inst/doc/Comparisons.pdf |binary
inst/doc/DSC2009_abstract.txt |only
inst/doc/Design-issues.pdf |binary
inst/doc/Intro2Matrix.pdf | 573 ++++++++++++++++++-------------------
inst/doc/Introduction.pdf |binary
inst/doc/sparseModels.pdf |binary
inst/test-tools.R | 28 +
man/Diagonal.Rd | 7
man/Matrix.Rd | 5
man/band.Rd | 11
man/bandSparse.Rd |only
man/bdiag.Rd | 5
man/lsparseMatrix-classes.Rd | 4
man/sparseMatrix.Rd | 2
src/CHOLMOD/Include/cholmod_blas.h | 6
src/dense.c | 2
src/dgeMatrix.c | 17 -
src/dgeMatrix.h | 4
src/init.c | 2
tests/Simple.R | 55 ++-
tests/indexing.R | 6
tests/indexing.Rout.save | 40 +-
38 files changed, 728 insertions(+), 440 deletions(-)