Fri, 13 Mar 2009

New package spuRs with initial version 1.0
Package: spuRs
Type: Package
Title: Functions and Datasets for "An Introduction to Scientific Programming and Simulation, Using R".
Version: 1.0
Date: 2008-09-04
Author: Owen Jones, Robert Maillardet, Andrew Robinson, Olga Borovkova, and Steven Carnie
Maintainer: Andrew Robinson
Depends: MASS
Description: This package provides functions and datasets from the book "An Introduction to Scientific Programming and Simulation, Using R".
License: GPL-3
LazyLoad: yes
Packaged: Fri Mar 13 11:40:42 2009; hornik
Repository: CRAN
Date/Publication: 2009-03-13 10:46:47

More information about spuRs at CRAN
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New package spcosa with initial version 0.1-1
Package: spcosa
Type: Package
Title: Spatial Coverage Sampling
Version: 0.1-1
Date: 2009-03-13
Author: D.J.J. Walvoort, D.J. Brus, and J.J. de Gruijter
Maintainer: Dennis Walvoort
Description: Spatial coverage sampling and random sampling from compact geographical strata created by k-means.
Depends: R (>= 2.8.0), rJava (>= 0.6-1), methods, ggplot2 (>= 0.8.1), rgdal
Suggests: classGraph, gpclib, gstat, rgl
Imports: sp (>= 0.9-28)
SystemRequirements: Java (>= 6.0)
License: GPL (>= 3)
LazyLoad: yes
Collate: class_Stratification.R class_CompactStratification.R class_CompactStratificationEqualArea.R class_CompactStratificationPriorPoints.R class_SamplingPattern.R class_SamplingPatternPurposive.R class_SamplingPatternCentroids.R class_SamplingPatternPriorPoints.R class_SamplingPatternRandom.R class_SamplingPatternRandomSamplingUnits.R class_SamplingPatternRandomComposite.R class_Statistic.R class_SpatialMean.R class_SamplingVariance.R class_StandardError.R class_SpatialVariance.R class_SpatialCumulativeDistributionFunction.R generic_estimate.R generic_getArea.R generic_getRelativeArea.R generic_getAttributes.R generic_getCellSize.R generic_getCentroid.R generic_getSampleSize.R generic_getNumberOfCells.R generic_getNumberOfStrata.R generic_getObjectiveFunctionValue.R generic_stratify.R generic_plot.R method_estimate-SamplingVariance-CompactStratification-SamplingPatternRandom-data.frame.R method_estimate-SamplingVariance-CompactStratificationEqualArea-SamplingPatternRandomComposite-data.frame.R method_estimate-SpatialCumulativeDistributionFunction-CompactStratification-SamplingPatternRandom-data.frame.R method_estimate-SpatialMean-CompactStratification-SamplingPatternRandom-data.frame.R method_estimate-SpatialMean-CompactStratificationEqualArea-SamplingPatternRandomComposite-data.frame.R method_estimate-SpatialVariance-CompactStratification-SamplingPatternRandom-data.frame.R method_estimate-StandardError-CompactStratification-SamplingPatternRandom-data.frame.R method_estimate-character-CompactStratificationEqualArea-SamplingPatternRandomComposite-data.frame.R method_estimate-character-CompactStratification-SamplingPatternRandomSamplingUnits-data.frame.R method_getArea-CompactStratification.R method_getRelativeArea-CompactStratification.R method_getCellSize-CompactStratification.R method_getCentroid-CompactStratification.R method_getNumberOfCells-CompactStratification.R method_getNumberOfStrata-CompactStratification.R method_getObjectiveFunctionValue-CompactStratification.R method_getSampleSize-SamplingPattern.R method_getSampleSize-SamplingPatternRandomComposite.R method_initialize-CompactStratification.R method_initialize-CompactStratificationPriorPoints.R method_stratify-SpatialPixels.R method_stratify-SpatialPolygons.R method_plot-CompactStratification.R method_plot-SamplingPattern.R method_plot-SamplingPatternPriorPoints.R method_plot-SamplingPatternRandomComposite.R method_plot-CompactStratification-SamplingPattern.R method_plot-CompactStratification-SamplingPatternPriorPoints.R method_plot-CompactStratification-SamplingPatternRandomComposite.R method_spsample_CompactStratificationEqualArea-numeric-character.R method_spsample_CompactStratification-missing-missing.R method_spsample_CompactStratification-numeric-missing.R method_spsample_CompactStratificationPriorPoints-missing.R method_setAs_SamplingPattern-data.frame.R method_setAs_SamplingPattern-SpatialPoints.R method_setAs_SamplingPatternRandomComposite-data.frame.R method_setAs_SamplingPatternRandomComposite-SpatialPointsDataFrame.R method_setAs_CompactStratification-data.frame.R method_setAs_CompactStratification-SpatialPixels.R method_setAs_CompactStratification-SpatialPixelsDataFrame.R method_show-Stratification.R method_show-SamplingPattern.R method_show-Statistic.R onLoad.R
Packaged: Fri Mar 13 11:46:09 2009; walvo001
Repository: CRAN
Date/Publication: 2009-03-13 11:04:30

More information about spcosa at CRAN
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Package biclust updated to version 0.7.1 with previous version 0.5 dated 2008-02-04

Author: Sebastian Kaiser, Rodrigo Santamaria, Roberto Theron, Luis Quintales and Friedrich Leisch.
Title: BiCluster Algorithms
Description: The main function biclust provides several algorithms to find biclusters in two-dimensional data: Cheng and Church, Spectral, Plaid Model, Xmotifs and Bimax. In addition, the package provides methods for data preprocessing (normalization and discretisation), visualisation, and validation of bicluster solutions.

Diff between biclust versions 0.5 dated 2008-02-04 and 0.7.1 dated 2009-03-13

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 27 files changed, 469 insertions(+), 152 deletions(-)

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Package RcmdrPlugin.survival updated to version 0.7-1 with previous version 0.7-0 dated 2009-02-20

Author: John Fox
Title: R Commander Plug-in for the survival Package
Description: This package provides an R Commander plug-in for the survival package, with dialogs for Cox models, parametric survival regression models, estimation of survival curves, and testing for differences in survival curves, along with data-management facilities and a variety of tests, diagnostics and graphs.

Diff between RcmdrPlugin.survival versions 0.7-0 dated 2009-02-20 and 0.7-1 dated 2009-03-13

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 11 files changed, 132 insertions(+), 45 deletions(-)

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Package Rcmdr updated to version 1.4-8 with previous version 1.4-7 dated 2009-01-08

Author: John Fox , with contributions from Michael Ash, Theophilius Boye, Stefano Calza, Andy Chang, Philippe Grosjean, Richard Heiberger, G. Jay Kerns, Renaud Lancelot, Matthieu Lesnoff, Samir Messad, Martin Maechler, Duncan Murdoch, Erich Neuwirth, Dan Putler, Brian Ripley, Miroslav Ristic, and Peter Wolf.
Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.

Diff between Rcmdr versions 1.4-7 dated 2009-01-08 and 1.4-8 dated 2009-03-13

 DESCRIPTION              |   40 +++++++++++++--------
 R/commander.R            |   13 +++----
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Package rgenoud updated to version 5.5-1 with previous version 5.4-7 dated 2008-01-07

Author: Walter R. Mebane, Jr. , Jasjeet Singh Sekhon
Title: R version of GENetic Optimization Using Derivatives
Description: A genetic algorithm plus derivative optimizer

Diff between rgenoud versions 5.4-7 dated 2008-01-07 and 5.5-1 dated 2009-03-13

 DESCRIPTION           |   14 +-
 man/genoud.Rd         |  341 +++++++++++++++++++++++++-------------------------
 src/evaluate.cpp      |   12 -
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 4 files changed, 209 insertions(+), 202 deletions(-)

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Package pomp updated to version 0.22-6 with previous version 0.22-5 dated 2009-02-04

Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto, Steve Ellner, Bruce Kendall
Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes

Diff between pomp versions 0.22-5 dated 2009-02-04 and 0.22-6 dated 2009-03-13

 DESCRIPTION                        |   13 ++++++++-----
 data/ou2.rda                       |binary
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 9 files changed, 24 insertions(+), 12 deletions(-)

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Package ouch updated to version 2.5-4 with previous version 2.5-3 dated 2009-01-30

Author: Aaron A. King and Marguerite A. Butler
Title: Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses
Description: Fit and compare Ornstein-Uhlenbeck models for evolution along a phylogenetic tree.

Diff between ouch versions 2.5-3 dated 2009-01-30 and 2.5-4 dated 2009-03-13

 DESCRIPTION               |   19 ++++++++++++-------
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 5 files changed, 52 insertions(+), 21 deletions(-)

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Package gWidgets updated to version 0.0-35 with previous version 0.0-32 dated 2008-12-18

Author: John Verzani. Based on the iwidgets code of Simon Urbanek and suggestions by Simon Urbanek, Philippe Grosjean and Michael Lawrence
Title: gWidgets API for building toolkit-independent, interactive GUIs
Description: gWidgets provides a toolkit-independent API for building interactive GUIs. Atleast one of the gWidgetsXXX packages, such as gWidgetstcltk, needs to be installed. Some icons are on loan from the scigraphica project http://scigraphica.sourceforge.net.

Diff between gWidgets versions 0.0-32 dated 2008-12-18 and 0.0-35 dated 2009-03-13

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 19 files changed, 964 insertions(+), 900 deletions(-)

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Package dplR updated to version 1.1.7 with previous version 1.1.6 dated 2009-01-01

Author: Andy Bunn
Title: Dendrochronology Program Library in R
Description: This package contains functions for performing some standard tree-ring analyses.

Diff between dplR versions 1.1.6 dated 2009-01-01 and 1.1.7 dated 2009-03-13

 DESCRIPTION  |   27 +++++++++++++++------------
 R/read.rwl.R |   18 ++++++++++++++----
 2 files changed, 29 insertions(+), 16 deletions(-)

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Package Matrix updated to version 0.999375-22 with previous version 0.999375-21 dated 2009-02-15

Author: Douglas Bates and Martin Maechler
Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and operations on them using Lapack and SuiteSparse.

Diff between Matrix versions 0.999375-21 dated 2009-02-15 and 0.999375-22 dated 2009-03-13

 ChangeLog                          |   73 ++++
 DESCRIPTION                        |   22 -
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 NAMESPACE                          |    1 
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 38 files changed, 728 insertions(+), 440 deletions(-)

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