Mon, 16 Mar 2009

New package phmm with initial version 0.4
Package: phmm
Version: 0.4
Date: 2008-12-18
Title: Proportional Hazards with Mixed Model (PHMM)
Author: Ronghui Xu, Michael Donohue
Maintainer: Michael Donohue
Depends: survival
Suggests: lme4
Description: Fits proportional hazards model incorporating random effects using an EM agorithm using Markov Chain Monte Carlo at E-step.
License: GPL-2
Packaged: Mon Mar 16 10:09:32 2009; mdonohue
Repository: CRAN
Date/Publication: 2009-03-16 18:37:41

More information about phmm at CRAN
Permanent link

Package lmom updated to version 1.2 with previous version 1.1 dated 2008-12-30

Author: J. R. M. Hosking
Title: L-moments
Description: Functions related to L-moments: computation of L-moments of distributions and data samples; parameter estimation; L-moment ratio diagram; plot vs. quantiles of an extreme-value distribution.

Diff between lmom versions 1.1 dated 2008-12-30 and 1.2 dated 2009-03-16

 DESCRIPTION   |   25 ++++++++++++++-----------
 NEWS          |    9 +++++++++
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 man/0-lmom.Rd |    6 +++---
 man/cdfln3.Rd |    2 +-
 man/cdfwei.Rd |    6 +++---
 man/evplot.Rd |    4 ++--
 man/lmrp.Rd   |    2 +-
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 9 files changed, 38 insertions(+), 26 deletions(-)

More information about lmom at CRAN
Permanent link

Package coin updated to version 1.0-2 with previous version 1.0-1 dated 2009-01-09

Author: Torsten Hothorn, Kurt Hornik, Mark A. van de Wiel and Achim Zeileis
Title: Conditional Inference Procedures in a Permutation Test Framework
Description: Conditional inference procedures for the general independence problem including two-sample, K-sample (non-parametric ANOVA), correlation, censored, ordered and multivariate problems.

Diff between coin versions 1.0-1 dated 2009-01-09 and 1.0-2 dated 2009-03-16

 CHANGES                          |    6 +++
 DESCRIPTION                      |   19 +++++++----
 R/Confints.R                     |    8 ++--
 ToDoList                         |    3 +
 inst/doc/LegoCondInf.pdf         |binary
 inst/doc/MAXtest.pdf             |binary
 inst/doc/coin.pdf                |binary
 inst/doc/coin_implementation.pdf |binary
 tests/bugfixes.R                 |   13 ++++++++
 tests/bugfixes.Rout.save         |   63 ++++++++++++++++++++++++++++++++++++++-
 10 files changed, 100 insertions(+), 12 deletions(-)

More information about coin at CRAN
Permanent link

Package DPpackage updated to version 1.0-7 with previous version 1.0-6 dated 2008-07-14

Author: Alejandro Jara with contributions from Timothy Hanson , Fernando A. Quintana , Peter Mueller , and Gary L. Rosner .
Title: Bayesian Nonparametric and Semiparametric Analysis
Description: This package contains functions to perform inference via simulation from the posterior distributions for Bayesian nonparametric and semiparametric models. Although the name of the package was motivated by the Dirichlet Process prior, the package considers and will consider other priors on functional spaces. So far, DPpackage includes models considering Dirichlet Processes, Dependent Dirichlet Processes, Polya Trees, Mixtures of Triangular distributions, and Random Bernstein polynomials priors. The package also includes models considering Penalized B-Splines. Currently the package includes semiparametric models for marginal and conditional density estimation, ROC curve analysis, interval censored data, binary regression models, generalized linear mixed models, IRT type models, and generalized additive models. The package also contains functions to compute Pseudo-Bayes factors for model comparison, and to elicitate the precision parameter of the Dirichlet Process. To maximize computational efficiency, the actual sampling for each model is done in compiled FORTRAN. The functions return objects which can be subsequently analyzed with functions provided in the coda package.

Diff between DPpackage versions 1.0-6 dated 2008-07-14 and 1.0-7 dated 2009-03-16

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Package plotrix updated to version 2.5-3 with previous version 2.5-2 dated 2009-02-18

Author: Jim Lemon,Ben Bolker,Sander Oom, Eduardo Klein,Barry Rowlingson, Hadley Wickham,Anupam Tyagi, Olivier Eterradossi,Gabor Grothendieck, Michael Toews,John Kane,Mike Cheetham, Rolf Turner,Carl Witthoft,Julian Stander, Thomas Petzoldt,Remko Duursma,Elisa Biancotto, Ofir Levy
Title: Various plotting functions
Description: Lots of plots, various labeling, axis and color scaling functions.

Diff between plotrix versions 2.5-2 dated 2009-02-18 and 2.5-3 dated 2009-03-16

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More information about plotrix at CRAN
Permanent link

Package clinsig updated to version 1.0-1 with previous version 1.0 dated 2009-01-20

Author: Jim Lemon ,
Title: Clinical significance functions.
Description: Functions for calculating clinical significance.

Diff between clinsig versions 1.0 dated 2009-01-20 and 1.0-1 dated 2009-03-16

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Permanent link

Package IDPmisc updated to version 1.0.01 with previous version 0.9.9 dated 2008-07-28

Author: Andreas Ruckstuhl, Thomas Unternaehrer, Rene Locher
Title: Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch)
Description: The IDPmisc package contains different high-level graphics functions for displaying large datasets, displaying circular data in a very flexible way, finding local maxima, brewing color ramps, drawing nice arrows, zooming 2D-plots, creating figures with differently colored margin and plot region. In addition, the package contains auxiliary functions for data manipulation like omitting observations with irregular values or selecting data by logical vectors, which include NAs. Other functions are especially useful in spectroscopy and analyses of environmental data: robust baseline fitting, finding peaks in spectra.

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Package rattle updated to version 2.4.47 with previous version 2.4.45 dated 2009-03-14

Author: Graham Williams
Title: A graphical user interface for data mining in R using GTK
Description: Rattle (the R Analytic Tool To Learn Easily) provides a Gnome (RGtk2) based interface to R functionality for data mining. The aim is to provide a simple and intuitive interface that allows a user to quickly load data from a CSV file (or via ODBC), transform and explore the data, build and evaluate models, and export models as PMML (predictive modelling markup language) or as scores. All of this with knowing little about R. All R commands are logged and commented through the log tab and so available to the user as a script file or as an aide to the user to interact directly with R itself. Rattle also exports a number of utility functions and the graphical user interface, invoked as rattle(), does not need to be run to deploy these.

Diff between rattle versions 2.4.45 dated 2009-03-14 and 2.4.47 dated 2009-03-16

 DESCRIPTION           |    8 ++---
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Package RSEIS updated to version 2.1-4 with previous version 2.1-1 dated 2009-02-06

Author: Jonathan M. Lees
Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to analyze seismic data, via, spectrum analysis, wavelet transforms, particle motion, hodograms.

Diff between RSEIS versions 2.1-1 dated 2009-02-06 and 2.1-4 dated 2009-03-16

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Package HH updated to version 2.1-25 with previous version 2.1-24 dated 2009-02-28

Author: Richard M. Heiberger
Title: Statistical Analysis and Data Display: Heiberger and Holland
Description: Support software for Statistical Analysis and Data Display (Springer, ISBN 0-387-40270-5). This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The authors demonstrate how to analyze data---showing code, graphics, and accompanying computer listings---for all the methods they cover. They emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises.

Diff between HH versions 2.1-24 dated 2009-02-28 and 2.1-25 dated 2009-03-16

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More information about HH at CRAN
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