Author: Alan Genz, Frank Bretz, Tetsuhisa Miwa, Xuefei Mi, Friedrich
Leisch, Fabian Scheipl, Torsten Hothorn
Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities,
quantiles, random deviates and densities.
Diff between mvtnorm versions 0.9-4 dated 2009-01-21 and 0.9-5 dated 2009-03-17
CHANGES | 7 ++++++- DESCRIPTION | 16 +++++++++------- R/mvt.R | 2 +- inst/CHANGES | 7 ++++++- inst/doc/MVT_Rnews.pdf |binary src/mvt.f | 4 ++-- tests/bugfix-tests.R | 3 +++ tests/bugfix-tests.Rout.save | 8 ++++++-- 8 files changed, 33 insertions(+), 14 deletions(-)
Author: Simon Wood
Diff between mgcv versions 1.5-0 dated 2009-03-03 and 1.5-1 dated 2009-03-17
Title: GAMs with GCV/AIC/REML smoothness estimation and GAMMs by PQL
Description: Routines for GAMs and other generalized ridge regression
with multiple smoothing parameter selection by GCV, REML or
UBRE/AIC. Also GAMMs by REML or PQL. Includes a gam() function.
DESCRIPTION | 13 +-
R/gam.fit3.r | 31 ++++---
R/mgcv.r | 5 -
R/smooth.r | 240 ++++++++++++++++++++++++++++++++++++++++++++++++++++++-
changeLog | 29 ++++++
man/gam.Rd | 2
man/gam.fit3.Rd | 8 -
man/gam.outer.Rd | 3
man/gamm.Rd | 2
src/gdi.c | 47 +++++++---
10 files changed, 337 insertions(+), 43 deletions(-)
Author: Fang Chang
Diff between clues versions 0.3.1 dated 2009-02-16 and 0.3.2 dated 2009-03-17
Title: Clustering Method Based on Local Shrinking
Description: The package contains functions for automatically
estimating the number of clusters and geting the final cluster
partition without any input parameter except the stopping rule
for convergence. The package also provides functions to
evaluate and compare the performances of partitions of a data
set both numerically and graphically.
DESCRIPTION | 42 ++++++++++++++++++++++--------------------
R/clues.R | 2 +-
R/clues.sil.R | 4 ++--
R/compClust.R | 10 +++++-----
R/shrinking.R | 2 +-
man/Get.CH.Rd | 4 +++-
man/Get.Silhouette.Rd | 4 +++-
man/clues.Rd | 6 ++++--
man/clustering.Rd | 4 +++-
man/compClust.Rd | 3 ++-
man/plotAvgCurves.Rd | 4 +++-
man/plotClusters.Rd | 4 +++-
man/plotCurves.Rd | 4 +++-
man/shrinking.Rd | 2 +-
14 files changed, 56 insertions(+), 39 deletions(-)
Author: Nicolas Bortolussi
Diff between apTreeshape versions 1.4-0 dated 2007-04-25 and 1.4-1 dated 2009-03-17
Title: Analyses of Phylogenetic Treeshape
Description: apTreeshape is mainly dedicated to simulation and analysis
of phylogenetic tree topologies using statistical indices. It
is a companion library of the 'ape' package. It provides
additional functions for reading, plotting, manipulating
phylogenetic trees. It also offers convenient web-access to
public databases, and enables testing null models of
macroevolution using corrected test statistics. Trees of class
"phylo" (from 'ape' package) can be converted easily.
DESCRIPTION | 26 ++++++++++++++++++--------
R/pandit.R | 23 +++++++++++------------
R/treebase.R | 1 -
man/aldous.test.Rd | 19 ++++++++++---------
man/dbtrees.Rd | 13 ++++++++-----
man/rtreeshape.Rd | 4 ++--
6 files changed, 49 insertions(+), 37 deletions(-)
Author: Jarrod Hadfield
Title: MCMC Generalised Linear Mixed Models
Description: MCMC Generalised Linear Mixed Models
Diff between MCMCglmm versions 1.05 dated 2009-03-06 and 1.06 dated 2009-03-17
DESCRIPTION | 17 ++++++++++------- R/MCMCglmm.R | 8 +++++++- inst/doc/Tutorial.pdf |binary man/MCMCglmm.Rd | 6 +++--- 4 files changed, 20 insertions(+), 11 deletions(-)
Author: Stef van Buuren
Diff between mice versions 1.16 dated 2007-06-25 and 1.21 dated 2009-03-17
Title: Multivariate Imputation by Chained Equations
Description: Multiple imputation of multivariate incomplete data by
Fully Conditional Specification
mice-1.16/mice/..Rcheck |only
mice-1.16/mice/man/..Rcheck |only
mice-1.21/mice/DESCRIPTION | 28 +-
mice-1.21/mice/R/mice.R | 247 +++++++++++------------
mice-1.21/mice/inst/ChangeLog | 16 +
mice-1.21/mice/man/complete.Rd | 93 ++++----
mice-1.21/mice/man/glm.mids.Rd | 60 +----
mice-1.21/mice/man/lm.mids.Rd | 18 +
mice-1.21/mice/man/mice-internal.Rd | 41 ++-
mice-1.21/mice/man/mice.Rd | 257 +++++++++++++++---------
mice-1.21/mice/man/mice.impute.lda.Rd | 25 +-
mice-1.21/mice/man/mice.impute.logreg.Rd | 5
mice-1.21/mice/man/mice.impute.logreg2.Rd | 12 -
mice-1.21/mice/man/mice.impute.mean.Rd | 6
mice-1.21/mice/man/mice.impute.norm.Rd | 13 -
mice-1.21/mice/man/mice.impute.norm.improper.Rd | 4
mice-1.21/mice/man/mice.impute.passive.Rd | 22 +-
mice-1.21/mice/man/mice.impute.pmm.Rd | 24 +-
mice-1.21/mice/man/mice.impute.polyreg.Rd | 28 +-
mice-1.21/mice/man/mice.impute.sample.Rd | 10
mice-1.21/mice/man/mice.mids.Rd | 32 +-
mice-1.21/mice/man/mids.Rd | 49 +---
mice-1.21/mice/man/mipo.Rd | 36 +--
mice-1.21/mice/man/mira.Rd | 29 +-
mice-1.21/mice/man/nhanes.Rd | 28 +-
mice-1.21/mice/man/nhanes2.Rd | 31 ++
mice-1.21/mice/man/pool.Rd | 15 -
27 files changed, 629 insertions(+), 500 deletions(-)
Author: Elizabeth Freeman
Diff between PresenceAbsence versions 1.1.2 dated 2008-03-28 and 1.1.3 dated 2009-03-17
More information about PresenceAbsence at CRAN
Title: Presence-Absence Model Evaluation
Description: This package provides a set of functions useful when
evaluating the results of presence-absence models. Package
includes functions for calculating threshold dependant measures
such as confusion matrices, pcc, sensitivity, specificity, and
Kappa, and produces plots of each measure as the threshold is
varied. It will calculate optimal threshold choice according to
a choice of optimization criteria. It also includes functions
to plot the threshold independent ROC curves along with the
associated AUC (area under the curve).
DESCRIPTION | 32 +++++++++++++++++++++-----------
R/optimal.thresholds.R | 12 +++++++++---
man/PresenceAbsence.package.Rd | 4 ++--
man/SIM3DATA.Rd | 2 +-
man/error.threshold.plot.Rd | 5 +++--
5 files changed, 36 insertions(+), 19 deletions(-)
Permanent link
Author: Christian Buchta and Kurt Hornik
Title: Selected ISO codes
Description: ISO language, territory, currency, script and character
codes. Provides ISO 639 language codes, ISO 3166 territory
codes, ISO 4217 currency codes, ISO 15924 script codes, and the
ISO 8859 and ISO 10646 character codes as well as the Unicode
data table.
Diff between ISOcodes versions 0.1-1 dated 2008-04-27 and 0.2-1 dated 2009-03-17
DESCRIPTION | 17 +++-- data/ISO_15924.rda |binary data/ISO_3166_1.rda |binary data/ISO_3166_2.rda |binary data/ISO_3166_3.rda |binary data/ISO_4217.rda |binary data/ISO_4217_Historic.rda |binary data/ISO_639_2.rda |binary data/ISO_639_3.rda |binary data/ISO_639_3_Retirements.rda |binary man/Unicode.Rd | 131 +++++++++++++++++++++++++++++++++++++---- 11 files changed, 130 insertions(+), 18 deletions(-)