Author: Thomas Lumley
Title: analysis of complex survey samples
Description: Summary statistics, generalised linear models, Cox models,
loglinear models, and general maximum pseudolikelihood
estimation for multistage stratified, cluster-sampled,
unequally weighted survey samples. Variances by Taylor series
linearisation or replicate weights. Post-stratification,
calibration, and raking. Two-phase designs. Graphics.
Diff between survey versions 3.11-2 dated 2009-02-24 and 3.12 dated 2009-03-22
DESCRIPTION | 16 ++++++++++++---- NAMESPACE | 11 ++++++++++- R/DBI.R | 3 ++- R/dbiupdate.R | 5 ++++- R/regtest.R | 6 +++++- R/surveyby.R | 19 +++++++++++++++++-- R/svyttest.R |only THANKS | 2 ++ inst/NEWS | 20 ++++++++++++++++++++ inst/doc/domain.pdf |binary inst/doc/epi.pdf |binary inst/doc/phase1.pdf |binary inst/doc/survey.pdf |binary man/surveysummary.Rd | 13 +++++++++++-- man/svyby.Rd | 13 ++++++++++--- man/svyciprop.Rd |only man/svycoxph.Rd | 10 ++++++---- man/svydesign.Rd | 8 +++++++- man/svyglm.Rd | 12 ++++++++---- man/svykm.Rd | 10 +++++----- man/svymle.Rd | 19 +++++++++++++------ man/svyquantile.Rd | 6 ++++-- man/svyratio.Rd | 2 +- man/svyrecvar.Rd | 4 ++++ man/svyttest.Rd |only man/twophase.Rd | 5 ++--- tests/twophase.R | 9 +++++---- tests/twophase.Rout.save | 28 ++++++++++++++++++---------- 28 files changed, 166 insertions(+), 55 deletions(-)
Author: Adelchi Azzalini
Diff between sn versions 0.4-11 dated 2009-01-30 and 0.4-12 dated 2009-03-22
Title: The skew-normal and skew-t distributions
Description: Functions for manipulating skew-normal and skew-t
probability distributions, and for fitting them to data, in the
scalar and in the multivariate case.
DESCRIPTION | 14 ++++++++------
R/sn.R | 6 +++---
man/sn.Rd | 3 ++-
3 files changed, 13 insertions(+), 10 deletions(-)
Author: Brian S. Yandell
Diff between qtlbim versions 1.9.2 dated 2009-02-28 and 1.9.3 dated 2009-03-22
Title: QTL Bayesian Interval Mapping
Description: Functions for model selection for genetic architecture.
DESCRIPTION | 20
R/close.R | 22
inst/doc/bpPDF/slide-15-6.pdf | 192
inst/doc/bpPDF/slide1hpd.pdf | 30
inst/doc/bpPDF/slide2LOD-1.pdf | 6
inst/doc/prototype.qtl.hyper.slides.pdf | 2221 -
inst/doc/qtlbim.pdf |binary
inst/doc/qtlbimPDF/FIG-QBBF.pdf | 78
inst/doc/qtlbimPDF/FIG-QBCODA.pdf | 32
inst/doc/qtlbimPDF/FIG-QBDIAG.pdf | 28
inst/doc/qtlbimPDF/FIG-QBEPI.pdf | 6204 ++---
inst/doc/qtlbimPDF/FIG-QBHPD.pdf | 30
inst/doc/qtlbimPDF/FIG-QBLOCI34.pdf | 7474 +++---
inst/doc/qtlbimPDF/FIG-Scanone-HyperLPD.pdf | 26
inst/doc/qtlbimPDF/FIG-Scanone-HyperSubset.pdf | 26
inst/doc/qtlbimPDF/FIG-Scantwo-HyperData.pdf | 12
inst/doc/qtlbimPDF/besthc.pdf | 24
inst/doc/qtlbimPDF/bestmds.pdf | 24
inst/doc/qtlbimPDF/closenqtl.pdf | 6
inst/doc/qtlbimPDF/closepat.pdf | 6
inst/doc/qtlbimPDF/mult.pdf |28810 ++++++++++++-------------
inst/doc/qtlbimPDF/multmerge.pdf |15182 ++++++-------
inst/doc/qtlbimPDF/one.pdf | 26
23 files changed, 30246 insertions(+), 30233 deletions(-)
Author: Berend Hasselman
Title: Solve systems of non linear equations
Description: Solve a system of non linear equations using a Broyden or
a Newton method with a choice of global strategies such as
linesearch and trust region. There are options for using a
numerical or an analytical jacobian and fixed or automatic
scaling of parameters.
Diff between nleqslv versions 1.1 dated 2009-02-16 and 1.3 dated 2009-03-22
DESCRIPTION | 17 ++++++++++------- NEWS | 12 +++++++++++- R/nleqslv.R | 2 +- man/nleqslv.Rd | 2 +- src/lixtra.f | 42 ++++++++++++++++++++++-------------------- src/nleqslv.c | 32 +++++++++++++++++++++++--------- src/nwbrdn.f | 12 +++++++----- src/nwnleq.f | 36 +++++++++++++++++++++++++++++++----- src/nwnwtn.f | 22 +++++++++++++--------- 9 files changed, 119 insertions(+), 58 deletions(-)
Author: S original by Kenneth Hess,
Diff between muhaz versions 1.2.3 dated 2006-04-09 and 1.2.4 dated 2009-03-22
Title: Hazard Function Estimation in Survival Analysis
Description: A package for producing a smooth estimate of the hazard
function for censored data.
muhaz-1.2.3/muhaz/INDEX |only
muhaz-1.2.3/muhaz/R/zzz.R |only
muhaz-1.2.4/muhaz/DESCRIPTION | 18 +++++++++++-------
muhaz-1.2.4/muhaz/NAMESPACE |only
muhaz-1.2.4/muhaz/R/all.R | 2 +-
muhaz-1.2.4/muhaz/man/kphaz.plot.Rd | 2 +-
muhaz-1.2.4/muhaz/man/muhaz.Rd | 2 +-
muhaz-1.2.4/muhaz/man/pehaz.Rd | 2 +-
muhaz-1.2.4/muhaz/man/plot.muhaz.Rd | 18 +++++++++---------
muhaz-1.2.4/muhaz/man/plot.pehaz.Rd | 6 +++---
muhaz-1.2.4/muhaz/man/summary.muhaz.Rd | 6 +++---
11 files changed, 30 insertions(+), 26 deletions(-)
Author: Paul Gilbert
Diff between TSpadi versions 2008.11-1 dated 2008-11-03 and 2009.3-1 dated 2009-03-22
Title: Time Series Database Interface extensions for PADI Time Series
Server
Description: Provides methods for generics in the TSdbi package to
connect through a protocol for application database interface
(PADI) to a time series database (e.g. Fame).
DESCRIPTION | 22 ++++++++++++++--------
Makefile |only
NEWS | 5 +++++
R/padi.R | 6 +++---
Rbuildignore |only
exec/getpadi |only
exec/getpwuid |only
exec/objectinfo |only
exec/padi_simple_svc |only
exec/putpadi |only
exec/x11arima |only
inst/doc/TSpadiFame.Stex | 28 +++++++++++++++++++++-------
inst/doc/TSpadiFame.pdf |binary
src/Makefile | 5 ++++-
src/padiutil.c | 2 +-
src/putpadi.c | 2 +-
tests |only
17 files changed, 49 insertions(+), 21 deletions(-)
Author: Paul Gilbert
Diff between TSodbc versions 2008.11-1 dated 2008-11-03 and 2009.3-1 dated 2009-03-22
Title: Time Series Database Interface extensions for ODBC
Description: TSodbc provides a ODBC interface for TSdbi.
TSodbc-2008.11-1/TSodbc/Rplots.pdf |only
TSodbc-2009.3-1/TSodbc/DESCRIPTION | 13 +++++++-----
TSodbc-2009.3-1/TSodbc/Makefile |only
TSodbc-2009.3-1/TSodbc/NEWS |only
TSodbc-2009.3-1/TSodbc/R/TSdbiMethods.R | 12 +++++------
TSodbc-2009.3-1/TSodbc/Rbuildignore |only
TSodbc-2009.3-1/TSodbc/inst/doc/TSodbc.Stex | 29 +++++++++++++++++-----------
TSodbc-2009.3-1/TSodbc/inst/doc/TSodbc.pdf |binary
TSodbc-2009.3-1/TSodbc/tests |only
9 files changed, 32 insertions(+), 22 deletions(-)
Author: Paul Gilbert
Diff between TSfame versions 2008.11-1 dated 2008-11-03 and 2009.3-1 dated 2009-03-22
Title: Time Series Database Interface extensions for fame
Description: TSfame provides a fame interface for TSdbi.
TSfame-2008.11-1/TSfame/Rplots.pdf |only
TSfame-2008.11-1/TSfame/testFame.db |only
TSfame-2009.3-1/TSfame/DESCRIPTION | 11 +-
TSfame-2009.3-1/TSfame/Makefile |only
TSfame-2009.3-1/TSfame/NEWS |only
TSfame-2009.3-1/TSfame/R/TSdbiMethods.R | 16 +--
TSfame-2009.3-1/TSfame/Rbuildignore |only
TSfame-2009.3-1/TSfame/inst/doc/TSfame.Stex | 115 +++++++++++++++++++++++++++-
TSfame-2009.3-1/TSfame/inst/doc/TSfame.pdf |binary
TSfame-2009.3-1/TSfame/tests |only
10 files changed, 129 insertions(+), 13 deletions(-)
Author: Paul Gilbert
Diff between TSSQLite versions 2008.11-1 dated 2008-11-03 and 2009.3-1 dated 2009-03-22
Title: Time Series Database Interface extentions for SQLite
Description: TSSQLite provides a SQLite interface for TSdbi.
TSSQLite-2008.11-1/TSSQLite/Rplots.pdf |only
TSSQLite-2008.11-1/TSSQLite/ets |only
TSSQLite-2008.11-1/TSSQLite/test |only
TSSQLite-2009.3-1/TSSQLite/DESCRIPTION | 13 ++++++++-----
TSSQLite-2009.3-1/TSSQLite/Makefile |only
TSSQLite-2009.3-1/TSSQLite/NEWS |only
TSSQLite-2009.3-1/TSSQLite/R/TSdbiMethods.R | 10 +++++-----
TSSQLite-2009.3-1/TSSQLite/Rbuildignore |only
TSSQLite-2009.3-1/TSSQLite/inst/doc/TSSQLite.Stex | 7 +++++--
TSSQLite-2009.3-1/TSSQLite/inst/doc/TSSQLite.pdf |binary
TSSQLite-2009.3-1/TSSQLite/tests/0serviceCheck.R |only
TSSQLite-2009.3-1/TSSQLite/tests/RSQLite.R | 5 +++--
12 files changed, 21 insertions(+), 14 deletions(-)
Author: Paul Gilbert
Diff between TSPostgreSQL versions 2008.11-1 dated 2008-11-03 and 2009.3-1 dated 2009-03-22
Title: Time Series Database Interface extensions for PostgreSQL
Description: TSPostgreSQL provides a PostgreSQL interface for TSdbi.
TSPostgreSQL-2008.11-1/TSPostgreSQL/Rplots.pdf |only
TSPostgreSQL-2009.3-1/TSPostgreSQL/DESCRIPTION | 13 ++++++----
TSPostgreSQL-2009.3-1/TSPostgreSQL/Makefile |only
TSPostgreSQL-2009.3-1/TSPostgreSQL/NEWS |only
TSPostgreSQL-2009.3-1/TSPostgreSQL/R/TSdbiMethods.R | 10 +++----
TSPostgreSQL-2009.3-1/TSPostgreSQL/Rbuildignore |only
TSPostgreSQL-2009.3-1/TSPostgreSQL/inst/doc/TSPostgreSQL.Stex | 13 +++++++---
TSPostgreSQL-2009.3-1/TSPostgreSQL/inst/doc/TSPostgreSQL.pdf |binary
TSPostgreSQL-2009.3-1/TSPostgreSQL/tests |only
9 files changed, 23 insertions(+), 13 deletions(-)
Author: Paul Gilbert
Diff between TSMySQL versions 2008.11-1 dated 2008-11-03 and 2009.3-1 dated 2009-03-22
Title: Time Series Database Interface extensions for MySQL
Description: TSMySQL provides a MySQL interface for TSdbi.
TSMySQL-2008.11-1/TSMySQL/Rplots.pdf |only
TSMySQL-2009.3-1/TSMySQL/DESCRIPTION | 11 +++++++----
TSMySQL-2009.3-1/TSMySQL/Makefile |only
TSMySQL-2009.3-1/TSMySQL/NEWS |only
TSMySQL-2009.3-1/TSMySQL/R/TSdbiMethods.R | 10 +++++-----
TSMySQL-2009.3-1/TSMySQL/Rbuildignore |only
TSMySQL-2009.3-1/TSMySQL/inst/doc/TSMySQL.Stex | 12 +++++++++---
TSMySQL-2009.3-1/TSMySQL/inst/doc/TSMySQL.pdf |binary
TSMySQL-2009.3-1/TSMySQL/tests |only
9 files changed, 21 insertions(+), 12 deletions(-)