Author: Andrew O. Finley
Diff between spBayes versions 0.1-1 dated 2009-03-03 and 0.1-2 dated 2009-03-24
Title: Univariate and Multivariate Spatial Modeling
Description: spBayes fits univariate and multivariate models with
Markov chain Monte Carlo (MCMC).
DESCRIPTION | 15 ++++++++++-----
R/spPredict.R | 10 +++++-----
inst/doc/spBayes-vignette.pdf |binary
src/adaptMetropGibbs.cpp | 4 ++--
4 files changed, 17 insertions(+), 12 deletions(-)
Author: Michael Hahsler, Christian Buchta and Kurt Hornik
Title: Infrastructure for seriation
Description: Infrastructure for seriation with an implementation of
several seriation/sequencing techniques to reorder matrices,
dissimilarity matrices, and dendrograms. Also contains some
visualizations techniques based on seriation.
Diff between seriation versions 0.1-6 dated 2008-09-29 and 1.0-0 dated 2009-03-24
DESCRIPTION | 29 +++++++++++++++++------------ R/dissplot.R | 39 ++++++++++++++++++++++++--------------- inst/doc/seriation.pdf |binary man/dissplot.Rd | 3 ++- man/seriate.Rd | 25 +++++-------------------- 5 files changed, 48 insertions(+), 48 deletions(-)
Author: Carsten F. Dormann and Bernd Gruber, with additional code from
Jochen Fruend, also based on C-code developed by Nils Bluethgen
and by Miguel Rodriguez-Girones.
Title: Visualising bipartite networks and calculating some ecological
indices.
Description: Bipartite provides functions to viualise webs and
calculate a series of indices commonly used to describe pattern
in ecological webs. It focusses on webs consisting of only two
trophic levels, e.g. pollination webs or predator-prey-webs.
Visualisation is important to get an idea of what we are
actually looking at, while the indices summarise different
aspects of the webs topology.
Diff between bipartite versions 0.85 dated 2009-03-11 and 0.90 dated 2009-03-24
bipartite-0.85/bipartite/R/compart.R |only bipartite-0.90/bipartite/.hg |only bipartite-0.90/bipartite/DESCRIPTION | 16 +++- bipartite-0.90/bipartite/R/compart.r |only bipartite-0.90/bipartite/R/networklevel.R | 6 - bipartite-0.90/bipartite/R/plotweb.R | 74 +++++++++++++++------- bipartite-0.90/bipartite/R/sortweb.r |only bipartite-0.90/bipartite/R/visweb.R | 21 ++++-- bipartite-0.90/bipartite/R/zzz.R | 5 + bipartite-0.90/bipartite/Wishlist.txt |only bipartite-0.90/bipartite/data/inouye1988.rda |only bipartite-0.90/bipartite/man/bipartite-package.Rd | 16 ++++ bipartite-0.90/bipartite/man/compart.Rd | 13 +-- bipartite-0.90/bipartite/man/inouye1988.Rd |only bipartite-0.90/bipartite/man/networklevel.Rd | 5 + bipartite-0.90/bipartite/man/sortweb.Rd |only bipartite-0.90/bipartite/man/vazquez.example.rd |only bipartite-0.90/bipartite/man/visweb.Rd | 26 ++++++- 18 files changed, 130 insertions(+), 52 deletions(-)
Author: Michael Hahsler, Christian Buchta, Bettina Gruen and Kurt
Hornik
Title: Mining Association Rules and Frequent Itemsets
Description: Provides the infrastructure for representing, manipulating
and analyzing transaction data and patterns (frequent itemsets
and association rules). Also provides interfaces to C
implementations of the association mining algorithms Apriori
and Eclat by C. Borgelt.
Diff between arules versions 0.6-8 dated 2009-01-16 and 1.0-0 dated 2009-03-24
arules-0.6-8/arules/COPYRIGHT |only arules-1.0-0/arules/DESCRIPTION | 32 arules-1.0-0/arules/R/itemCoding.R | 4 arules-1.0-0/arules/inst/doc/arules.Rnw | 4 arules-1.0-0/arules/inst/doc/arules.pdf | 1546 +++++++++++++++----------------- 5 files changed, 791 insertions(+), 795 deletions(-)
Author: Paulino Perez Rodriguez
Diff between ars versions 0.3 dated 2009-01-26 and 0.4 dated 2009-03-24
Title: Adaptive Rejection Sampling
Description: Adaptive Rejection Sampling, Original version
DESCRIPTION | 24 ++++++++++++++----------
R/ars.R | 4 ++--
2 files changed, 16 insertions(+), 12 deletions(-)
Author: Michael Hahsler and Kurt Hornik
Title: Traveling Salesperson Problem (TSP)
Description: Basic infrastructure and some algorithms for the traveling
salesperson problem (TSP). The package provides some simple
algorithms and an interface to Concorde, the currently fastest
TSP solver. Concorde itself is not included in the package and
has to be obtained separately.
Diff between TSP versions 0.2-6 dated 2009-02-07 and 1.0-0 dated 2009-03-24
TSP-0.2-6/TSP/COPYRIGHT |only TSP-1.0-0/TSP/DESCRIPTION | 20 TSP-1.0-0/TSP/inst/doc/TSP.pdf | 1049 ++++++++++++++++++++--------------------- 3 files changed, 530 insertions(+), 539 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development;
structures and even function names may change in the future.
Diff between FrF2 versions 0.9 dated 2009-03-11 and 0.9-1 dated 2009-03-24
DESCRIPTION | 36 ++++++++++++++++++++++++------------ R/FrF2.R | 2 +- R/pb.R | 2 +- R/util.R | 6 +++--- inst/NEWS | 15 +++++++++++++++ man/CatalogueAccessors.Rd | 8 +++++--- man/FrF2.Rd | 4 ++++ man/utilitiesPB.Rd | 8 ++++++-- 8 files changed, 59 insertions(+), 22 deletions(-)
Author: Roger Bivand and Danlin Yu
Title: Geographically weighted regression
Description: Functions for computing geographically weighted
regressions based on work by Chris Brunsdon, Martin Charlton
and Stewart Fortheringham, http://ncg.nuim.ie/ncg/GWR/index.htm
Diff between spgwr versions 0.5-5 dated 2009-01-14 and 0.5-7 dated 2009-03-24
ChangeLog | 12 +++++++++++- DESCRIPTION | 15 ++++++++------- R/gwr.R | 8 ++++---- R/gwr.whole.test.R | 16 ++++++++-------- inst/ChangeLog | 12 +++++++++++- man/gwr.Rd | 2 +- 6 files changed, 43 insertions(+), 22 deletions(-)
Author: David B. Dahl
Diff between xtable versions 1.5-4 dated 2008-10-05 and 1.5-5 dated 2009-03-24
Title: Export tables to LaTeX or HTML
Description: Coerce data to LaTeX and HTML tables
DESCRIPTION | 9 +++++----
R/print.xtable.R | 5 +++--
R/xtable.R | 2 ++
inst/doc/xtableGallery.pdf |binary
man/print.xtable.Rd | 7 ++++---
man/xtable.Rd | 2 +-
6 files changed, 15 insertions(+), 10 deletions(-)
Author: Andrew Balemi, James Curran, Brant Deppa, Mike Forster,
Charlotte Maia, Chris Wild
Title: Stats 20x
Description: Stats 20x functions.
Diff between s20x versions 3.1-4 dated 2009-02-23 and 3.1-5 dated 2009-03-24
DESCRIPTION | 21 ++-- R/boxqq.r | 21 +++- R/crossFactors.R | 27 +++++- R/onewayPlot.R | 206 ++++++++++++++++++++++++++--------------------- R/stripqq.r | 83 ++++++++++-------- R/summary1way.R | 25 ++--- man/autocor.plot.Rd | 4 man/boxqq.Rd | 12 +- man/ciReg.Rd | 4 man/cooks20x.Rd | 4 man/crossFactors.Rd | 28 +++++- man/estimateContrasts.Rd | 6 - man/freq1way.Rd | 7 - man/interactionPlots.Rd | 7 - man/layout20x.Rd | 6 - man/multipleComp.Rd | 4 man/onewayPlot.Rd | 25 +++-- man/pairs20x.Rd | 5 - man/residPlot.Rd | 4 man/rowdistr.Rd | 7 - man/skewness.Rd | 4 man/stripqq.Rd | 12 +- man/summary2way.Rd | 2 man/trendscatter.Rd | 4 24 files changed, 308 insertions(+), 220 deletions(-)
Author: Graham Williams
Diff between rattle versions 2.4.47 dated 2009-03-16 and 2.4.54 dated 2009-03-24
Title: A graphical user interface for data mining in R using GTK
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab
and so available to the user as a script file or as an aide to
the user to interact directly with R itself. Rattle also
exports a number of utility functions and the graphical user
interface, invoked as rattle(), does not need to be run to
deploy these.
DESCRIPTION | 8
NAMESPACE | 1
R/ada.R | 6
R/associate.R | 21
R/ctree.R | 12
R/data.R | 170 +++----
R/evaluate.R | 104 ++--
R/export.R | 6
R/hclust.R | 15
R/kmeans.R | 22
R/model.R | 28 -
R/nnet.R | 6
R/projects.R | 159 +++---
R/random_forest.R | 8
R/rattle.R | 353 ++++++++-------
R/rpart.R | 12
R/textminer.R | 12
R/transform.R | 219 ++++-----
R/zzz.R | 64 +-
inst/etc/rattle.glade | 1076 +++++++++++++++++++++++-----------------------
inst/odt/data_summary.odt |binary
man/internal.Rd | 2
man/listVersions.Rd |only
23 files changed, 1183 insertions(+), 1121 deletions(-)
Author: Christian Ritz
Diff between drc versions 1.5-5 dated 2009-02-08 and 1.6-0 dated 2009-03-24
Title: Analysis of dose-response curves
Description: Analysis of one or multiple curves with focus on
concentration-response, dose-response and time-response curves
used, for example in biology, environmental sciences, medicine,
pharmacology, toxicology.
drc-1.5-5/drc/R/colFct.R |only
drc-1.5-5/drc/R/drmBoxcox.R |only
drc-1.5-5/drc/R/drmBoxcoxCI.R |only
drc-1.5-5/drc/R/mdControl.R |only
drc-1.5-5/drc/R/mdrcBinomial.R |only
drc-1.5-5/drc/R/mdrcBoxcoxCI.R |only
drc-1.5-5/drc/R/mdrcConvertParm.R |only
drc-1.5-5/drc/R/mdrcDeriv.R |only
drc-1.5-5/drc/R/mdrcHetVar.R |only
drc-1.5-5/drc/R/mdrcLs.R |only
drc-1.5-5/drc/R/mdrcOpt.R |only
drc-1.5-5/drc/R/mdrcParNames.R |only
drc-1.5-5/drc/R/mdrcRobust.R |only
drc-1.5-5/drc/R/mdrcScaleDose.R |only
drc-1.5-5/drc/R/mdrcSign.R |only
drc-1.5-5/drc/R/mdrcVp.R |only
drc-1.5-5/drc/R/multdrc.R |only
drc-1.5-5/drc/R/richards.R |only
drc-1.5-5/drc/man/colFct.Rd |only
drc-1.5-5/drc/man/mdControl.Rd |only
drc-1.5-5/drc/man/multdrc.Rd |only
drc-1.5-5/drc/man/richards.Rd |only
drc-1.6-0/drc/CHANGES |only
drc-1.6-0/drc/DESCRIPTION | 33
drc-1.6-0/drc/NAMESPACE | 6
drc-1.6-0/drc/R/CRS.6.R | 11
drc-1.6-0/drc/R/ED.drc.R | 47 -
drc-1.6-0/drc/R/MAX.R | 4
drc-1.6-0/drc/R/anova.drc.R | 254 +++---
drc-1.6-0/drc/R/anova.drclist.R | 117 ++-
drc-1.6-0/drc/R/boxcox.drc.R | 133 ++-
drc-1.6-0/drc/R/braincousens.R | 63 -
drc-1.6-0/drc/R/cedergreen.R | 53 -
drc-1.6-0/drc/R/drm.R | 1291 ++++++++++++++++++++---------------
drc-1.6-0/drc/R/drmConvertParm.R | 2
drc-1.6-0/drc/R/drmEMbinomial.r | 16
drc-1.6-0/drc/R/drmEMls.R | 15
drc-1.6-0/drc/R/drmOpt.R | 9
drc-1.6-0/drc/R/drmPoisson.R | 4
drc-1.6-0/drc/R/drmc.R | 9
drc-1.6-0/drc/R/genRetFct.R |only
drc-1.6-0/drc/R/gompertz.R | 10
drc-1.6-0/drc/R/hewlett.R | 67 +
drc-1.6-0/drc/R/llogistic.R | 191 +++--
drc-1.6-0/drc/R/llogistic2.R | 15
drc-1.6-0/drc/R/lnormal.R | 3
drc-1.6-0/drc/R/mixdrc.R | 20
drc-1.6-0/drc/R/mixture.R | 282 ++-----
drc-1.6-0/drc/R/modelFit.R |only
drc-1.6-0/drc/R/mrdrm.R | 86 +-
drc-1.6-0/drc/R/mselect.R | 38 -
drc-1.6-0/drc/R/plot.drc.R | 80 +-
drc-1.6-0/drc/R/predict.drc.R | 11
drc-1.6-0/drc/R/print.summary.drc.R | 13
drc-1.6-0/drc/R/searchdrc.R | 26
drc-1.6-0/drc/R/ssf.LL.R |only
drc-1.6-0/drc/R/ucedergreen.R | 22
drc-1.6-0/drc/R/voelund.R | 60 -
drc-1.6-0/drc/R/weibull1.R | 31
drc-1.6-0/drc/R/weibull2.R | 27
drc-1.6-0/drc/R/yieldLoss.R |only
drc-1.6-0/drc/man/BC.5.Rd | 50 -
drc-1.6-0/drc/man/CRS.4a.Rd | 28
drc-1.6-0/drc/man/CRS.5a.Rd | 2
drc-1.6-0/drc/man/ED.drc.Rd | 61 -
drc-1.6-0/drc/man/G.aparine.Rd | 14
drc-1.6-0/drc/man/H.virescens.Rd | 7
drc-1.6-0/drc/man/LL.2.Rd | 11
drc-1.6-0/drc/man/LL.3.Rd | 22
drc-1.6-0/drc/man/LL.4.Rd | 6
drc-1.6-0/drc/man/LL.5.Rd | 10
drc-1.6-0/drc/man/M.bahia.Rd | 10
drc-1.6-0/drc/man/MAX.Rd | 22
drc-1.6-0/drc/man/MM.Rd | 2
drc-1.6-0/drc/man/O.mykiss.Rd | 8
drc-1.6-0/drc/man/PR.Rd | 6
drc-1.6-0/drc/man/RScompetition.Rd | 3
drc-1.6-0/drc/man/S.alba.Rd | 9
drc-1.6-0/drc/man/S.capricornutum.Rd | 9
drc-1.6-0/drc/man/W2.Rd | 10
drc-1.6-0/drc/man/W3.Rd | 8
drc-1.6-0/drc/man/W4.Rd | 12
drc-1.6-0/drc/man/acidiq.Rd | 32
drc-1.6-0/drc/man/anova.drc.Rd | 28
drc-1.6-0/drc/man/auxins.Rd | 62 -
drc-1.6-0/drc/man/barley.Rd | 14
drc-1.6-0/drc/man/boxcox.drc.Rd | 11
drc-1.6-0/drc/man/braincousens.Rd | 38 -
drc-1.6-0/drc/man/bread.drc.Rd | 2
drc-1.6-0/drc/man/cedergreen.Rd | 58 -
drc-1.6-0/drc/man/coef.drc.Rd | 15
drc-1.6-0/drc/man/compParm.Rd | 2
drc-1.6-0/drc/man/comped.Rd | 10
drc-1.6-0/drc/man/confint.drc.Rd | 12
drc-1.6-0/drc/man/daphnids.Rd | 29
drc-1.6-0/drc/man/deguelin.Rd | 2
drc-1.6-0/drc/man/drm.Rd | 55 -
drc-1.6-0/drc/man/drmc.Rd | 6
drc-1.6-0/drc/man/earthworms.Rd | 19
drc-1.6-0/drc/man/fitted.drc.Rd | 6
drc-1.6-0/drc/man/glymet.Rd | 30
drc-1.6-0/drc/man/gompGrowth.Rd | 2
drc-1.6-0/drc/man/gompertzd.Rd | 12
drc-1.6-0/drc/man/isobole.Rd | 4
drc-1.6-0/drc/man/lepidium.Rd | 2
drc-1.6-0/drc/man/lettuce.Rd | 5
drc-1.6-0/drc/man/llogistic.Rd | 13
drc-1.6-0/drc/man/lnormal.Rd | 3
drc-1.6-0/drc/man/logLik.drc.Rd | 13
drc-1.6-0/drc/man/logistic.Rd | 22
drc-1.6-0/drc/man/mecter.Rd | 32
drc-1.6-0/drc/man/mixdrc.Rd | 29
drc-1.6-0/drc/man/mixture.Rd | 49 -
drc-1.6-0/drc/man/modelFit.Rd |only
drc-1.6-0/drc/man/mrdrm.Rd | 16
drc-1.6-0/drc/man/mselect.Rd | 34
drc-1.6-0/drc/man/nasturtium.Rd | 2
drc-1.6-0/drc/man/plot.drc.Rd | 20
drc-1.6-0/drc/man/plotraw.Rd | 3
drc-1.6-0/drc/man/print.drc.Rd | 9
drc-1.6-0/drc/man/residuals.drc.Rd | 9
drc-1.6-0/drc/man/secalonic.Rd | 15
drc-1.6-0/drc/man/summary.drc.Rd | 10
drc-1.6-0/drc/man/terbuthylazin.Rd | 4
drc-1.6-0/drc/man/vcov.drc.Rd | 13
drc-1.6-0/drc/man/vinclozolin.Rd | 2
drc-1.6-0/drc/man/weibull1.Rd | 38 -
drc-1.6-0/drc/man/yieldLoss.Rd |only
drc-1.6-0/drc/tests/test3.R | 8
129 files changed, 2261 insertions(+), 1898 deletions(-)
Author: Andy Bunn
Title: Dendrochronology Program Library in R
Description: This package contains functions for performing some
standard tree-ring analyses.
Diff between dplR versions 1.1.7 dated 2009-03-13 and 1.1.8 dated 2009-03-24
DESCRIPTION | 8 ++++---- R/read.rwl.R | 13 +++++++++---- R/write.rwl.R | 9 ++++----- 3 files changed, 17 insertions(+), 13 deletions(-)
Author: Charles J. Geyer
Diff between aster versions 0.7-6 dated 2009-01-12 and 0.7-7 dated 2009-03-24
Title: Aster Models
Description: functions and datasets for Aster modeling (forest graph
exponential family conditional or unconditional canonical
statistic models for life history analysis)
CHANGES | 1 +
DESCRIPTION | 12 +++++++-----
data/sim.rda |only
inst/doc/Rplots.pdf | 4 ++--
man/aster.Rd | 12 ++++++++++++
man/sim.Rd |only
6 files changed, 22 insertions(+), 7 deletions(-)