Author: Terry Therneau, original R port by Thomas Lumley
Title: Survival analysis, including penalised likelihood.
Description: survival analysis: descriptive statistics, two-sample
tests, parametric accelerated failure models, Cox model.
Delayed entry (truncation) allowed for all models; interval
censoring for parametric models. Case-cohort designs.
Diff between survival versions 2.35-3 dated 2009-03-20 and 2.35-4 dated 2009-04-01
DESCRIPTION | 8 ++++---- R/summary.survfit.S | 6 +++--- tests/summary_survfit.R |only tests/summary_survfit.Rout.save |only 4 files changed, 7 insertions(+), 7 deletions(-)
Author: Jens Henrik Badsberg
Title: Similarity of Richards curves
Description: Values for similarity of backfitted independent values of
Richards curves are computed and plotted.
Diff between similarityRichards versions 0.4 dated 2008-03-28 and 0.5.0 dated 2009-04-01
DESCRIPTION | 28 +++++----- R/30 |only R/fits2relFits.R |only R/fits2simFits.R | 2 R/relFit.R |only R/relFits.R |only R/repValue.R |only R/repValues.R |only R/simConf.R | 8 ++ R/simFit.R | 81 +++++++++++++++++------------ R/simFits.R | 25 ++++++--- R/simPlotOne.R | 104 +++++++++++++++++++++++++------------- R/sub2relFits.R |only R/sub2simFits.R | 19 ++++-- man/fits2relFits.Rd |only man/fits2simFits.Rd | 3 - man/relFit.Rd |only man/relFits.Rd |only man/repValues.Rd |only man/simConf.Rd | 6 +- man/simFit.Rd | 6 +- man/simFits.Rd | 23 +++++--- man/simPlot.Rd | 2 man/simPlotOne.Rd | 10 ++- man/similarityRichards-package.Rd | 6 +- man/sub2relFits.Rd |only man/sub2simFits.Rd | 3 - 27 files changed, 209 insertions(+), 117 deletions(-)
More information about similarityRichards at CRAN
Permanent link
Author: John Fox
Diff between sem versions 0.9-15 dated 2009-01-29 and 0.9-16 dated 2009-04-01
Title: Structural Equation Models
Description: This package contains functions for fitting general linear
structural equation models (with observed and unobserved
variables) by the method of maximum likelihood using the RAM
approach, and for fitting structural equations in
observed-variable models by two-stage least squares.
DESCRIPTION | 37 +++++++++++++++++++++----------------
NAMESPACE | 5 +++--
R/fscores.R |only
R/tsls.R | 5 +++--
inst/CHANGES | 6 ++++++
man/CNES.Rd | 18 +++++++++---------
man/fscores.Rd |only
man/raw.moments.Rd | 2 +-
man/sem.Rd | 6 +++---
9 files changed, 46 insertions(+), 33 deletions(-)
Author: Jens Henrik Badsberg
Title: Richards curves
Description: Fit Richards curves
Diff between richards versions 0.4 dated 2008-03-28 and 0.5.0 dated 2009-04-01
richards-0.4/richards/R/SSrichardsLogBM.R |only richards-0.4/richards/R/fitDoubleList.R |only richards-0.4/richards/R/fitList.R |only richards-0.4/richards/man/fitList.Rd |only richards-0.4/richards/tests |only richards-0.5.0/richards/DESCRIPTION | 25 +- richards-0.5.0/richards/R/SSrichardsLogBG.R |only richards-0.5.0/richards/R/amList.R |only richards-0.5.0/richards/R/amLlist.R |only richards-0.5.0/richards/R/b2slope.R |only richards-0.5.0/richards/R/extractEstimates.R | 6 richards-0.5.0/richards/R/extractSummaries.R | 5 richards-0.5.0/richards/R/ny2f.R |only richards-0.5.0/richards/R/richards.R | 2 richards-0.5.0/richards/R/richards.inv.R | 19 -- richards-0.5.0/richards/R/slope2b.R |only richards-0.5.0/richards/R/x2c.R |only richards-0.5.0/richards/data |only richards-0.5.0/richards/demo/showNy.R | 222 ++++++++++++------------ richards-0.5.0/richards/demo/sourceModified.R | 32 +-- richards-0.5.0/richards/demo/sourceRichards.R | 4 richards-0.5.0/richards/man/SSny0.Rd | 121 +++++++------ richards-0.5.0/richards/man/SSnyFixed.Rd | 83 ++++---- richards-0.5.0/richards/man/SSrichards.Rd | 79 ++++---- richards-0.5.0/richards/man/b2slope.Rd |only richards-0.5.0/richards/man/initialRichards.Rd | 2 richards-0.5.0/richards/man/lamodified.Rd |only richards-0.5.0/richards/man/richards-package.Rd | 10 - richards-0.5.0/richards/man/richards.Rd | 52 +++-- richards-0.5.0/richards/man/simulatedPlates.Rd |only 30 files changed, 358 insertions(+), 304 deletions(-)
Author: Andrew Gelman
Diff between mi versions 0.04-5 dated 2009-03-21 and 0.04-6 dated 2009-04-01
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
CHANGELOG | 15 +++++++++++++++
DESCRIPTION | 13 ++++++++-----
NAMESPACE | 6 ++++++
R/AllClass.R | 18 ++++++++++++++----
R/bayesglm.mi.R |only
R/coef.R | 21 +++++++++++++++++----
R/display.R | 36 ++++++++++++++++++++++++++++--------
R/glm.mi.R | 4 ++--
R/imputation.models.R | 4 ++--
R/lm.mi.R | 6 +++---
R/lmer.mi.R |only
R/mi.R | 3 ++-
R/mi.categorical.R | 2 +-
R/mi.fixed.R | 6 ++++--
R/mi.hist.R | 2 +-
R/mi.info.R | 4 ++--
R/mi.polr.R | 2 +-
R/mi.preprocess.R | 8 ++++++--
R/print.R | 3 +++
R/se.coef.R | 10 ++++++++--
man/glm.mi.Rd | 18 +++++++++++++-----
man/lm.mi.Rd | 4 ++--
man/lmer.mi.Rd |only
man/mi.Rd | 8 ++++----
man/mi.fixed.Rd | 16 +++++++++++++++-
man/type.models.Rd | 7 +++++--
26 files changed, 162 insertions(+), 54 deletions(-)
Author: John Fox
Diff between effects versions 2.0-3 dated 2008-12-13 and 2.0-4 dated 2009-04-01
Title: Effect Displays for Linear, Generalized Linear,
Multinomial-Logit, and Proportional-Odds Logit Models
Description: Graphical and tabular effect displays, e.g., of
interactions, for linear generalized linear, multinomial-logit,
and proportional-odds logit models.
DESCRIPTION | 40 +++++++++++++++++++++++-----------------
R/effects.R | 6 +++---
R/plot-summary-print-methods.R | 26 ++++++++++++++++++--------
R/utilities.R | 41 +++++++++++++++++++++++++++++++++++------
data/Titanic.rda |only
data/Wells.rda |only
inst/CHANGES | 9 +++++++++
man/Arrests.Rd | 4 ++++
man/BEPS.Rd | 4 ++++
man/Cowles.Rd | 3 +++
man/Titanic.Rd |only
man/WVS.Rd | 4 ++++
man/Wells.Rd |only
man/effect.Rd | 4 ++--
man/summary.effect.Rd | 12 +++++++++---
15 files changed, 114 insertions(+), 39 deletions(-)
Author: Jens Henrik Badsberg
Title: Backfitted independent values of Richards curves
Description: Backfitted independent values of Richards curves are
computed and plotted.
Diff between backfitRichards versions 0.4 dated 2008-03-28 and 0.5.0 dated 2009-04-01
DESCRIPTION | 27 ++++++++++-------- R/backConf.R | 8 ++++- R/backFit.R | 60 +++++++++++++++++++++++++++++------------ R/backFits.R | 6 ++-- R/backPlot.R | 42 ++++++++++++++++++++-------- man/backConf.Rd | 6 ++-- man/backFit.Rd | 1 man/backFits.Rd | 5 ++- man/backPlot.Rd | 9 ++++-- man/backfitRichards-package.Rd | 14 ++++++--- 10 files changed, 120 insertions(+), 58 deletions(-)
More information about backfitRichards at CRAN
Permanent link
Author: Adrian Baddeley
Diff between spatstat versions 1.15-0 dated 2009-03-02 and 1.15-1 dated 2009-04-01
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Contains
functions for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, and pixel images. Point
process models can be fitted to point pattern data. Cluster
type models are fitted by the method of minimum contrast. Very
general Gibbs point process models can be fitted to point
pattern data using a function ppm similar to lm or glm. Models
may include dependence on covariates, interpoint interaction
and dependence on marks. Fitted models can be simulated
automatically. Also provides facilities for formal inference
(such as chi-squared tests) and model diagnostics (including
simulation envelopes, residuals, residual plots and Q-Q plots).
DESCRIPTION | 72 ++--
INDEX | 2
R/Hest.R |only
R/Kest.S | 27 +
R/as.im.R | 23 -
R/breakpts.S | 4
R/clip.psp.R | 8
R/distbdry.S | 6
R/images.R | 2
R/kmrs.S | 3
R/localK.R | 11
R/options.R | 5
R/plot.im.R | 6
R/psp.R | 23 -
R/superimpose.R | 24 -
R/tess.R | 26 +
R/util.S | 4
R/window.S | 148 +++++----
R/xypolygon.S | 51 +++
data/heather.rda |only
demo/data.R | 3
demo/spatstat.R | 47 ++-
inst/doc/shapefiles.pdf | 727 ++++++++++++++++++++++--------------------------
man/Hest.Rd |only
man/Kest.Rd | 64 +++-
man/as.im.Rd | 23 -
man/as.psp.Rd | 10
man/as.rectangle.Rd | 42 ++
man/distmap.Rd | 9
man/distmap.owin.Rd | 3
man/distmap.ppp.Rd | 1
man/heather.Rd |only
man/internal.Rd | 3
man/psp.Rd | 3
man/spatstat.options.Rd | 7
src/poly2im.c |only
36 files changed, 788 insertions(+), 599 deletions(-)
Author: Lukas Meier
Title: Fitting user specified models with Group Lasso penalty
Description: Fits user specified (GLM-) models with Group Lasso penalty
Diff between grplasso versions 0.4-1 dated 2009-03-30 and 0.4-2 dated 2009-04-01
DESCRIPTION | 8 ++--- R/grplasso.R | 35 +++++++++++++++--------- R/helpers.R | 23 ++++++++++------ man/grplasso.Rd | 7 ++-- man/lambdamax.Rd | 7 ++-- tests/test_centerscaling.R | 64 ++++++++++++++++++++++++++++++++++++++++++--- 6 files changed, 110 insertions(+), 34 deletions(-)
Author: Torsten Hothorn, Kurt Hornik, Mark A. van de Wiel and Achim
Zeileis
Title: Conditional Inference Procedures in a Permutation Test Framework
Description: Conditional inference procedures for the general
independence problem including two-sample, K-sample
(non-parametric ANOVA), correlation, censored, ordered and
multivariate problems.
Diff between coin versions 1.0-2 dated 2009-03-16 and 1.0-3 dated 2009-04-01
CHANGES | 8 DESCRIPTION | 8 R/ClassicalTests.R | 17 inst/doc/LegoCondInf.pdf |binary inst/doc/MAXtest.Rnw | 779 +++++++++++++++++++++++++++++---------- inst/doc/MAXtest.pdf |binary inst/doc/coin.pdf |binary inst/doc/coin_implementation.pdf |binary inst/doc/references.bib | 528 +++++++++++++++++--------- man/SymmetryTests.Rd | 15 tests/regtest_2sample.R | 5 tests/regtest_2sample.Rout.save | 9 12 files changed, 990 insertions(+), 379 deletions(-)
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann
Gneiting, University of Washington With contributions from
Bobby Yuen and Michael Polokowski
Title: Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts
from ensemble forecasts and weather observations.
Diff between ensembleBMA versions 4.1.1 dated 2009-01-27 and 4.2 dated 2009-04-01
CHANGELOG | 2 ++ DESCRIPTION | 21 ++++++++++++--------- R/crps.ensembleBMAnormal.R | 4 ++-- R/ensembleBMAgamma.R | 8 +++++--- R/ensembleBMAgamma0.R | 8 +++++--- R/ensembleBMAnormal.R | 8 +++++--- R/ensembleData.R | 2 +- R/quantileForecast.ensembleBMAnormal.R | 4 ++-- R/trainingData.R | 10 ++++++---- R/verifRank.R | 4 ++-- 10 files changed, 42 insertions(+), 29 deletions(-)
Author: Andrew Gelman
Diff between arm versions 1.2-7 dated 2009-03-01 and 1.2-8 dated 2009-04-01
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Description: R functions for processing lm, glm, mer and polr outputs.
CHANGELOG | 5 ++++
DESCRIPTION | 38 +++++++++++++++++----------------
R/display.R | 64 ++++++++++++++++++++++++++++++++++++++++++---------------
man/display.Rd | 13 ++++++-----
4 files changed, 80 insertions(+), 40 deletions(-)
Author: Valerie Obenchain
Title: Data retrieval from a Labkey database
Description: This package imports data from a labkey database into an R
data frame
Diff between Rlabkey versions 0.0.6 dated 2009-03-25 and 0.0.7 dated 2009-04-01
DESCRIPTION | 8 ++++---- NEWS | 10 +++++----- R/makeDF.R | 14 ++++++++------ man/Rlabkey-package.Rd | 4 ++-- 4 files changed, 19 insertions(+), 17 deletions(-)
Author: Jasjeet Singh Sekhon
Diff between Matching versions 4.7-5 dated 2009-01-13 and 4.7-6 dated 2009-04-01
Title: Multivariate and Propensity Score Matching with Balance
Optimization
Description: Provides functions for multivariate and propensity score
matching and for finding optimal balance based on a genetic
search algorithm. A variety of univariate and multivariate
metrics to determine if balance has been obtained are also
provided.
DESCRIPTION | 25 +++++++++++++++----------
src/scythematrix.cc | 2 ++
src/scythematrix.h | 5 ++++-
tests/AbadieImbens.Rout.save | 4 ++--
tests/DehejiaWahba.Rout.save | 4 ++--
tests/GenMatch.Rout.save | 8 ++++----
tests/Matchby.Rout.save | 4 ++--
7 files changed, 31 insertions(+), 21 deletions(-)