Author: Mikis Stasinopoulos
Diff between gamlss.nl versions 1.9-0 dated 2008-06-06 and 2.0-0 dated 2009-04-03
Title: Fitting non linear parametric GAMLSS models
Description: This is an add on package to GAMLSS. It allows one extra
method for fitting GAMLSS models. The main function nlgamlss()
can fit any parametric (up to four parameter) GAMLSS
distribution.
DESCRIPTION | 36 ++++++++++++++++++++----------------
R/nlgamlss.R | 30 +++++++++++++++++++++++++-----
man/la.Rd | 7 +++----
3 files changed, 48 insertions(+), 25 deletions(-)
Author: Christian Buchta and Kurt Hornik
Title: Selected ISO codes
Description: ISO language, territory, currency, script and character
codes. Provides ISO 639 language codes, ISO 3166 territory
codes, ISO 4217 currency codes, ISO 15924 script codes, and the
ISO 8859 and ISO 10646 character codes as well as the Unicode
data table and UN M.49 area codes.
Diff between ISOcodes versions 0.2-3 dated 2009-03-25 and 0.2-4 dated 2009-04-03
DESCRIPTION | 10 +++++----- data/UN_M.49_Countries.rda |only data/UN_M.49_Regions.rda |only man/UN_M.49.Rd |only 4 files changed, 5 insertions(+), 5 deletions(-)
Author: Gemechis Dilba Djira, Mario Hasler, Daniel Gerhard, Frank
Schaarschmidt
Title: Inferences for ratios of coefficients in the general linear
model
Description: With this package, it is possible to perform
(simultaneous) inferences for ratios of linear combinations of
coefficients in the general linear model. In particular, tests
and confidence interval estimations for ratios of treatment
means in the normal one-way layout and confidence interval
estimations like in (multiple) slope ratio and parallel line
assays can be carried out. Moreover, it is possible to
calculate the sample sizes required in comparisons with a
control based on relative margins. For the simple two-sample
problem, functions for a t-test for ratio-formatted hypotheses
and the corresponding Fieller confidence interval are provided
assuming homogeneous or heterogeneous group variances.
Diff between mratios versions 1.3.9 dated 2008-10-23 and 1.3.10 dated 2009-04-03
DESCRIPTION | 46 ++++++++++++++++++++-------------- data/AP.rda |binary man/AP.rd | 15 ++++++----- man/ASAT.rd | 8 +++-- man/BW.Rd | 7 ++--- man/Mutagenicity.Rd | 12 +++++--- man/Penicillin.Rd | 14 +++++++--- man/SRAssay.rd | 12 +++++--- man/angina.Rd | 4 +- man/gsci.ratio.Rd | 58 ++++++++++++++++++++++++++++++++----------- man/mratios.package.Rd | 43 ++++++++++++++++++++++--------- man/n.ratio.Rd | 8 ++++- man/plot.sci.ratio.Rd | 1 man/print.sci.ratio.Rd | 3 -- man/print.simtest.ratio.Rd | 1 man/rat.weight.rd | 8 +++-- man/sci.ratio.Rd | 10 +++---- man/sci.ratio.gen.Rd | 18 ++++++++----- man/sci.ratioVH.Rd | 20 ++++++++------ man/simtest.ratio.Rd | 37 +++++++++++++-------------- man/simtest.ratioVH.Rd | 24 +++++++++++------ man/summary.sci.ratio.Rd | 2 - man/summary.simtest.ratio.Rd | 2 - man/t.test.ratio.Rd | 25 +++++++++++------- 24 files changed, 239 insertions(+), 139 deletions(-)
More information about orthogonalsplinebasis at CRAN
Permanent link
Author: Eva Herrmann
Diff between lokern versions 1.0-4 dated 2003-11-05 and 1.0-7 dated 2009-04-03
Title: Kernel Regression Smoothing with Local or Global Plug-in
Bandwidth
Description: Kernel regression smoothing with adaptive local or global
plug-in bandwidth selection.
lokern-1.0-4/lokern/INDEX |only
lokern-1.0-4/lokern/R/varest.R |only
lokern-1.0-4/lokern/man/varest.Rd |only
lokern-1.0-7/lokern/ChangeLog | 33 +++++++++++++++++
lokern-1.0-7/lokern/DESCRIPTION | 21 ++++++----
lokern-1.0-7/lokern/R/glkerns.R | 56 ++++++++++++++--------------
lokern-1.0-7/lokern/R/lokerns.R | 52 +++++++++++++-------------
lokern-1.0-7/lokern/R/varNPreg.R | 6 +++
lokern-1.0-7/lokern/man/glkerns.Rd | 15 ++++---
lokern-1.0-7/lokern/man/lokerns.Rd | 13 ------
lokern-1.0-7/lokern/man/varNPreg.Rd | 4 ++
lokern-1.0-7/lokern/man/xSim.Rd | 1
lokern-1.0-7/lokern/src/auxkerns.f | 57 +++++++++++++++++------------
lokern-1.0-7/lokern/src/glkerns.f | 60 ++++++++++++++++---------------
lokern-1.0-7/lokern/src/lokerns.f | 54 ++++++++++++++-------------
lokern-1.0-7/lokern/tests/glk1.Rout.save | 35 +++++++++---------
lokern-1.0-7/lokern/tests/infloop-bug.R |only
lokern-1.0-7/lokern/tests/lok1.Rout.save | 27 +++++++------
18 files changed, 246 insertions(+), 188 deletions(-)
Author: John Fox, Michael Friendly, and Georges Monette
Title: Visualizing Tests in Multivariate Linear Models
Description: Represents sums-of-squares-and-products matrices for
linear hypotheses and for error using ellipses (in two
dimensions) and ellipsoids (in three dimensions).
Diff between heplots versions 0.8-4 dated 2008-11-19 and 0.8-5 dated 2009-04-03
DESCRIPTION | 36 +++++++++++++++++++++--------------- inst/CHANGES | 5 +++++ inst/CITATION | 28 ++++++++++++++++------------ man/heplot-package.Rd | 23 ++++++++++++----------- 4 files changed, 54 insertions(+), 38 deletions(-)
Author: Mikis Stasinopoulos
Diff between gamlss.tr versions 1.9-0 dated 2008-06-06 and 2.0-0 dated 2009-04-03
Title: Generating and fitting truncated (gamlss.family) distributions
Description: This is an add on package to GAMLSS. The purpose of this
package is to allow users to defined truncated distributions in
GAMLSS models. The main function gen.trun() generates truncated
version of an existing GAMLSS family distribution.
DESCRIPTION | 32 +++++++++++++++++++-------------
1 file changed, 19 insertions(+), 13 deletions(-)
Author: Mikis Stasinopoulos
Diff between gamlss.mx versions 1.9-0 dated 2008-06-06 and 2.0-0 dated 2009-04-03
Title: A GAMLSS add on package for fitting mixture distributions
Description: The main purpose of this package is to allow fitting of
mixture distributions with GAMLSS models.
DESCRIPTION | 30 +++++++++++++++++-------------
R/gamlssNP.R | 5 +++--
man/MX.control.Rd | 1 -
man/gamlssMX.Rd | 2 +-
man/gamlssNP.Rd | 2 +-
5 files changed, 22 insertions(+), 18 deletions(-)
Author: Mikis Stasinopoulos
Diff between gamlss.dist versions 1.9-0 dated 2008-06-06 and 2.0-0 dated 2009-04-03
Title: Extra distributions to be used for GAMLSS modelling.
Description: This package contains few extra distributions for GAMLSS
modelling.
DESCRIPTION | 32 ++++++++++++++++++--------------
R/WEI3.R | 6 +++---
man/RGE.Rd | 5 ++---
man/SICHEL.Rd | 4 ++--
man/alveolar.Rd | 2 +-
man/computer.Rd | 2 +-
man/parzen.Rd | 2 +-
man/tensile.Rd | 4 ++--
8 files changed, 30 insertions(+), 27 deletions(-)
Author: Mikis Stasinopoulos
Diff between gamlss.cens versions 1.9.0 dated 2008-06-06 and 2.0.0 dated 2009-04-03
Title: Fitting an interval response variable using gamlss.family
distributions
Description: This is an add on package to GAMLSS. The purpose of this
package is to allow users to fit interval response variables in
GAMLSS models. The main function gen.cens() generates a
censored version of an existing GAMLSS family distribution.
DESCRIPTION | 34 ++++++++++++++++++++--------------
1 file changed, 20 insertions(+), 14 deletions(-)
Author: Mikis Stasinopoulos
Diff between gamlss versions 1.9-4 dated 2008-09-16 and 2.0-0 dated 2009-04-03
Title: Generalized Additive Models for Location Scale and Shape.
Description: The main GAMLSS library and datasets.
DESCRIPTION | 31 ++--
NAMESPACE | 16 ++
R/WEI.R | 14 -
R/WEI2.R | 14 -
R/cubicSplinesNewS.R | 46 ++++--
R/cy.R |only
R/gamlss.R | 20 ++
R/lpred.R | 18 +-
R/pb.R | 353 ++++++++++++++++++++++++++++++++++--------------
R/ri.R |only
R/vcov_gamlss.R | 36 +++-
inst/doc/NEWS.txt | 19 ++
man/BCt.Rd | 2
man/BEINF.Rd | 2
man/NBI.Rd | 2
man/NBII.Rd | 2
man/SI.Rd | 2
man/centiles.Rd | 2
man/cs.Rd | 31 ++--
man/gamlss.control.Rd | 2
man/gamlss.cs.Rd | 14 +
man/gamlss.family.Rd | 2
man/gamlss.fp.Rd | 6
man/gamlss.ps.Rd | 10 +
man/gamlss.rc.Rd | 2
man/make.link.gamlss.Rd | 3
man/ps.Rd | 73 +++++++--
man/refit.Rd | 2
man/ridge.Rd | 15 +-
29 files changed, 523 insertions(+), 216 deletions(-)
Author: John Fox
Diff between car versions 1.2-12 dated 2009-01-20 and 1.2-13 dated 2009-04-03
Title: Companion to Applied Regression
Description: This package accompanies J. Fox, An R and S-PLUS Companion
to Applied Regression, Sage, 2002. The package contains mostly
functions for applied regression, linear models, and
generalized linear models, with an emphasis on regression
diagnostics, particularly graphical diagnostic methods. There
are also some utility functions. With some exceptions, I have
tried not to duplicate capabilities in the basic distribution
of R, nor in widely used packages. Where relevant, the
functions in car are consistent with na.action = na.omit or
na.exclude.
DESCRIPTION | 51 ++++++++++++++++-------------
R/influencePlot.R | 46 ++++++++++++++++----------
R/recode.R | 88 ++++++++++++++++++++++++++-------------------------
inst/CHANGES | 8 ++++
man/car-package.Rd | 4 +-
man/influencePlot.Rd | 16 ++++-----
man/levene.test.Rd | 6 +++
7 files changed, 126 insertions(+), 93 deletions(-)
Author: Daniel Merl
Diff between amei versions 1.0 dated 2008-12-05 and 1.0-1 dated 2009-04-03
Title: Adaptive Management of Epidemiological Interventions
Description: This package provides a flexible statistical framework for
generating optimal epidemiological interventions that are
designed to minimize the total expected cost of an emerging
epidemic while simultaneously propagating uncertainty regarding
underlying disease parameters through to the decision process
via Bayesian posterior inference. The strategies produced
through this framework are adaptive: vaccination schedules are
iteratively adjusted to reflect the anticipated trajectory of
the epidemic given the current population state and updated
parameter estimates.
amei-1.0-1/amei/ChangeLog |only
amei-1.0-1/amei/DESCRIPTION | 31 ++-
amei-1.0-1/amei/R/MC.R | 17 --
amei-1.0-1/amei/R/MC_util.R | 92 +++++++----
amei-1.0-1/amei/R/epi_mcmc.R | 50 ++++--
amei-1.0-1/amei/R/manage.R | 101 ++++++++----
amei-1.0-1/amei/R/plots.R | 35 ++--
amei-1.0-1/amei/demo/amei.R | 227 +++++++++++++++++++++++++---
amei-1.0-1/amei/inst/doc/alt_trans.iRnw |only
amei-1.0-1/amei/inst/doc/amei.Rnw | 109 ++++++-------
amei-1.0-1/amei/inst/doc/amei.pdf |binary
amei-1.0-1/amei/inst/doc/pnas.iRnw | 91 +++++------
amei-1.0-1/amei/inst/doc/pnas_mcmanage.iRnw | 20 +-
amei-1.0-1/amei/man/MCepi.Rd | 17 +-
amei-1.0-1/amei/man/MCmanage.Rd | 5
amei-1.0-1/amei/man/amei-internal.Rd | 4
amei-1.0-1/amei/man/epistep.Rd | 11 +
amei-1.0-1/amei/man/manage.Rd | 16 +
amei-1.0-1/amei/src/epidemics.c | 6
amei-1.0/amei/inst/doc/amei.dvi |only
amei-1.0/amei/inst/doc/q.log |only
21 files changed, 566 insertions(+), 266 deletions(-)
Author: Thibaut Jombart
Diff between adegenet versions 1.2-2 dated 2008-12-19 and 1.2-3 dated 2009-04-03
Title: adegenet: a R package for the multivariate analysis of genetic
markers.
Description: Classes and functions for genetic data analysis within the
multivariate framework.
adegenet-1.2-2/adegenet/DEADJOE |only
adegenet-1.2-3/adegenet/ChangeLog | 108 +++-
adegenet-1.2-3/adegenet/DESCRIPTION | 30 -
adegenet-1.2-3/adegenet/R/HWE.R | 15
adegenet-1.2-3/adegenet/R/auxil.R | 543 ++------------------
adegenet-1.2-3/adegenet/R/basicMethods.R | 142 ++++-
adegenet-1.2-3/adegenet/R/chooseCN.R | 48 -
adegenet-1.2-3/adegenet/R/classes.R | 430 ++++++++--------
adegenet-1.2-3/adegenet/R/dist.genpop.R | 24
adegenet-1.2-3/adegenet/R/export.R | 54 +-
adegenet-1.2-3/adegenet/R/fstat.R | 7
adegenet-1.2-3/adegenet/R/genind2genpop.R | 76 +-
adegenet-1.2-3/adegenet/R/gstat.randtest.R | 25
adegenet-1.2-3/adegenet/R/handling.R |only
adegenet-1.2-3/adegenet/R/hybridize.R | 119 ++--
adegenet-1.2-3/adegenet/R/import.R | 640 ++++++++++++------------
adegenet-1.2-3/adegenet/R/loadingplot.R | 37 -
adegenet-1.2-3/adegenet/R/makefreq.R | 2
adegenet-1.2-3/adegenet/R/monmonier.R | 2
adegenet-1.2-3/adegenet/R/old2new.R | 8
adegenet-1.2-3/adegenet/R/propShared.R | 44 -
adegenet-1.2-3/adegenet/R/propTyped.R | 51 +
adegenet-1.2-3/adegenet/R/scale.R | 40 +
adegenet-1.2-3/adegenet/R/sequences.R |only
adegenet-1.2-3/adegenet/R/setAs.R | 2
adegenet-1.2-3/adegenet/R/spca.R | 9
adegenet-1.2-3/adegenet/R/spca.rtests.R | 2
adegenet-1.2-3/adegenet/R/zzz.R | 8
adegenet-1.2-3/adegenet/TODO | 48 -
adegenet-1.2-3/adegenet/data/microbov.RData |binary
adegenet-1.2-3/adegenet/data/nancycats.RData |binary
adegenet-1.2-3/adegenet/data/rupica.RData |binary
adegenet-1.2-3/adegenet/data/sim2pop.RData |binary
adegenet-1.2-3/adegenet/data/spcaIllus.RData |binary
adegenet-1.2-3/adegenet/man/HWE.Rd | 2
adegenet-1.2-3/adegenet/man/accessors.Rd | 71 ++
adegenet-1.2-3/adegenet/man/adegenet.package.Rd | 15
adegenet-1.2-3/adegenet/man/as-methods.Rd | 8
adegenet-1.2-3/adegenet/man/as.genind.Rd | 19
adegenet-1.2-3/adegenet/man/as.genpop.Rd | 11
adegenet-1.2-3/adegenet/man/auxil.Rd | 11
adegenet-1.2-3/adegenet/man/chooseCN.Rd | 2
adegenet-1.2-3/adegenet/man/colorplot.Rd | 2
adegenet-1.2-3/adegenet/man/df2genind.Rd | 8
adegenet-1.2-3/adegenet/man/dist.genpop.Rd | 2
adegenet-1.2-3/adegenet/man/export.Rd | 2
adegenet-1.2-3/adegenet/man/fstat.Rd | 2
adegenet-1.2-3/adegenet/man/genind.Rd | 22
adegenet-1.2-3/adegenet/man/genind2genpop.Rd | 47 +
adegenet-1.2-3/adegenet/man/genpop.Rd | 12
adegenet-1.2-3/adegenet/man/gstat.randtest.Rd | 2
adegenet-1.2-3/adegenet/man/hybridize.Rd | 2
adegenet-1.2-3/adegenet/man/import.Rd | 11
adegenet-1.2-3/adegenet/man/isPoly.Rd |only
adegenet-1.2-3/adegenet/man/loadingplot.Rd | 13
adegenet-1.2-3/adegenet/man/makefreq.Rd | 2
adegenet-1.2-3/adegenet/man/monmonier.Rd | 2
adegenet-1.2-3/adegenet/man/na.replace.Rd | 2
adegenet-1.2-3/adegenet/man/old2new.Rd | 2
adegenet-1.2-3/adegenet/man/propShared.Rd | 2
adegenet-1.2-3/adegenet/man/propTyped.Rd | 2
adegenet-1.2-3/adegenet/man/read.fstat.Rd | 2
adegenet-1.2-3/adegenet/man/read.genepop.Rd | 2
adegenet-1.2-3/adegenet/man/read.genetix.Rd | 2
adegenet-1.2-3/adegenet/man/read.structure.Rd | 4
adegenet-1.2-3/adegenet/man/repool.Rd | 2
adegenet-1.2-3/adegenet/man/scale.Rd | 2
adegenet-1.2-3/adegenet/man/selpopsize.Rd |only
adegenet-1.2-3/adegenet/man/seploc.Rd | 2
adegenet-1.2-3/adegenet/man/seppop.Rd | 14
adegenet-1.2-3/adegenet/man/sequences.Rd |only
adegenet-1.2-3/adegenet/man/sim2pop.Rd | 2
adegenet-1.2-3/adegenet/man/spca.Rd | 2
adegenet-1.2-3/adegenet/man/spca.rtests.Rd | 2
adegenet-1.2-3/adegenet/man/spcaIllus.Rd | 2
adegenet-1.2-3/adegenet/man/truenames.Rd | 2
adegenet-1.2-3/adegenet/man/virClasses.Rd | 2
adegenet-1.2-3/adegenet/misc/capreo.RData |only
adegenet-1.2-3/adegenet/src/monmonier-utils.c | 2
adegenet-1.2-3/adegenet/src/sharedAll.c | 2
80 files changed, 1473 insertions(+), 1363 deletions(-)
Author: Dirk Eddelbuettel with contributions by Simon Urbanek and David
Reiss
Title: Rcpp R/C++ interface package
Description: R/C++ interface classes and examples The Rcpp library maps
data types betweeen R and C++, and includes support for R types
real, integer, character, vector, matrix, Date, datetime (i.e.
POSIXct) at microsecond resolution, data frame, and function.
It also supports calling R functions from C++.
Diff between Rcpp versions 0.6.4 dated 2009-03-02 and 0.6.5 dated 2009-04-03
COPYING |only DESCRIPTION | 24 ++++++++++++------------ cleanup | 1 + inst/ChangeLog | 14 +++++++++++++- inst/doc/RcppAPI.pdf |binary src/Makevars | 2 +- 6 files changed, 27 insertions(+), 14 deletions(-)
Author: John Fox
Title: R Commander Plug-in for the survival Package
Description: This package provides an R Commander plug-in for the
survival package, with dialogs for Cox models, parametric
survival regression models, estimation of survival curves, and
testing for differences in survival curves, along with
data-management facilities and a variety of tests, diagnostics
and graphs.
Diff between RcmdrPlugin.survival versions 0.7-1 dated 2009-03-13 and 0.7-2 dated 2009-04-03
DESCRIPTION | 14 ++++++++------ R/Survfit.R | 5 +++-- R/misc.R | 36 ++++++++++++++++++------------------ inst/CHANGES | 6 ++++++ man/RcmdrPlugin.survival-package.Rd | 4 ++-- man/survQuantiles.Rd | 2 +- 6 files changed, 38 insertions(+), 29 deletions(-)
More information about RcmdrPlugin.survival at CRAN
Permanent link
Author: Matti Pastell
Diff between Animal versions 1.01 dated 2009-03-28 and 1.02 dated 2009-04-03
Title: Analyze time-coded animal behavior data
Description: The Animal package is a collection of functions for
analyzing animal (including humans) behavior data originating
from a variety of sources. The package has functions to analyze
time coded behaviors from CowLog (open source software for
coding behaviors from digital video) data files and observation
files with similar format. Other features include hourly,
daily, weekly and monthly summaries of time coded data,
analysis of RIC (roughage intake system, Insentec automation)
data files and labeling measurement data according to
behavioral observations for e.g model building purposes.
DESCRIPTION | 13 ++++++++-----
R/bouts.RIC.R | 25 ++++++++++++-------------
R/read.CowLog.R |only
R/read.RIC.R | 2 +-
inst/doc |only
man/RIC.Rd | 3 +--
man/cowAnalyze.Rd | 2 +-
man/read.CowLog.Rd |only
man/weekly.Rd | 1 +
9 files changed, 24 insertions(+), 22 deletions(-)