Author: Jae H. Kim
Title: Variance Ratio tests and spectral shape tests for Weak-form
Market Efficiency
Description: A collection of variance ratio and spectral shapte tests
Diff between vrtest versions 0.90 dated 2008-08-06 and 0.91 dated 2009-04-14
DESCRIPTION | 23 +++++++++++++---------- NAMESPACE | 2 +- R/AutoBoot.test.R |only man/AutoBoot.test.Rd |only man/vrtest-package.Rd | 8 ++++---- 5 files changed, 18 insertions(+), 15 deletions(-)
Author: Eric Bair, R. Tibshirani
Title: Supervised principal components
Description: Supervised principal components for regression and
survival analsysis. Especially useful for high-dimnesional
data, including microarray data.
Diff between superpc versions 1.05 dated 2007-04-19 and 1.06 dated 2009-04-14
DESCRIPTION | 18 ++-- R/superpc.predict.R | 168 ++++++++++++++++++-------------------------- R/superpc.rainbowplot.R | 28 +++---- man/superpc.listfeatures.Rd | 10 +- 4 files changed, 99 insertions(+), 125 deletions(-)
Author: Roger Bivand
Title: Interface between GRASS 6 geographical information system and R
Description: Interpreted interface between GRASS 6 geographical
information system and R, based on starting R from within the
GRASS environment.
Diff between spgrass6 versions 0.5-18 dated 2009-02-05 and 0.6-3 dated 2009-04-14
ChangeLog | 84 +++++++++++++++++++++- DESCRIPTION | 18 ++-- R/AAA.R |only R/bin_link.R | 208 ++++++++++++++++++++++++++++++++++++------------------- R/initGRASS.R |only R/spgrass6.R | 58 +++++++++------ R/vect_link.R | 121 ++++++++++++++++++++----------- R/xml1.R |only R/zzz.R | 18 ++++ inst/CITATION | 2 inst/ChangeLog | 89 +++++++++++++++++++++++ man/execGRASS.Rd |only man/initGRASS.Rd |only man/readRAST6.Rd | 44 ++--------- man/readVECT6.Rd | 13 +-- man/spgrass6.Rd | 2 16 files changed, 468 insertions(+), 189 deletions(-)
Author: Julien Barnier
Title: Functions to make R usage in social sciences easier (in french)
Description: This package provides functions for beginners and social
sciences students or researchers. Currently it includes
functions for cross-tabulation, weighting, results export, and
maps plotting. The documentation and help pages are written in
french.
Diff between rgrs versions 0.2-8 dated 2009-03-04 and 0.2-9 dated 2009-04-14
DESCRIPTION | 20 ++++++++++++++------ R/carte.prop.R | 19 ++++++++++++------- 2 files changed, 26 insertions(+), 13 deletions(-)
Author: Jeff D. Hamann
Diff between rconifers versions 0.0-9 dated 2008-11-26 and 0.0-10 dated 2009-04-14
Title: R interface to the CONIFERS forest growth model
Description: This package contains functions for simulating future
forest conditions using the CONIFERS growth model.
DESCRIPTION | 30 +++++++++++++++++-------------
R/rconifers.r | 35 ++++++++++++++++++++++++++++++++++-
data/swo.txt | 2 +-
src/conifers.h | 2 +-
src/mortality.c | 22 +++++++++++-----------
src/rconifers.c | 36 ++++++++++++++++++++++++++++++++----
src/sample.c | 6 +++---
src/smc_coeffs.c | 2 +-
src/smc_model.c | 9 ++++-----
src/swo_coeffs.c | 20 ++++++++++----------
src/swo_model.c | 22 ++++++++++------------
11 files changed, 124 insertions(+), 62 deletions(-)
Author: Ken Beath
Diff between randomLCA versions 0.6-2 dated 2009-03-08 and 0.7-1 dated 2009-04-14
Title: Random Effects Latent Class Analysis
Description: Fits random effects latent class models, as well as
standard latent class models.
DESCRIPTION | 15 +-
NAMESPACE | 2
R/bestlca.R | 9 -
R/fit.adapt.random.randomLCA.R | 6 +
R/fit.adapt.random2.randomLCA.R | 9 +
R/fit.adapt.random2byclass.randomLCA.R | 5
R/fit.adapt.randombyclass.randomLCA.R | 8 +
R/fit.fixed.randomLCA.R | 1
R/outcome.probs.randomLCA.R | 95 ++++++++++++++++--
R/randomLCA.R | 10 -
R/simulate.randomLCA.R |only
inst/NEWS | 12 ++
inst/doc/dentistry.lca2.outcomes.boot.RData |only
inst/doc/dentistry.lca2random.outcomes.boot.RData |only
inst/doc/randomLCA-example.Rnw | 112 +++++++++++++++-------
inst/doc/randomLCA-example.pdf |binary
man/outcome.probs.Rd | 12 +-
man/randomLCA.Rd | 2
man/simulate.Rd |only
19 files changed, 228 insertions(+), 70 deletions(-)
Author: Roger Koenker
Diff between quantreg versions 4.26 dated 2009-01-26 and 4.27 dated 2009-04-14
Title: Quantile Regression
Description: Quantile regression and related methods.
quantreg-4.26/quantreg/inst/doc/.build.timestamp |only
quantreg-4.27/quantreg/DESCRIPTION | 8
quantreg-4.27/quantreg/R/quantreg.R | 3
quantreg-4.27/quantreg/R/rqss.R | 11
quantreg-4.27/quantreg/inst/ChangeLog | 11
quantreg-4.27/quantreg/inst/doc/Rplots.pdf | 4213 +++++++++++++++++------
quantreg-4.27/quantreg/inst/doc/rq.pdf |binary
quantreg-4.27/quantreg/man/plot.Rd | 9
quantreg-4.27/quantreg/src/ratfor/out |only
quantreg-4.27/quantreg/src/ratfor/rqbr.f | 17
quantreg-4.27/quantreg/src/ratfor/rqbr.o |only
quantreg-4.27/quantreg/src/ratfor/rqbr.r | 4
quantreg-4.27/quantreg/src/ratfor/rqbrold.o |only
quantreg-4.27/quantreg/src/rqbr.f | 2
14 files changed, 3320 insertions(+), 958 deletions(-)
Author: Alberto Viglione
Title: Non-supervised Regional Frequency Analysis
Description: A collection of statistical tools for objective
(non-supervised) applications of the Regional Frequency
Analysis methods in hydrology. The package refers to the
index-value method and, more precisely, helps the hydrologist
to: (1) regionalize the index-value; (2) form homogeneous
regions with similar growth curves; (3) fit distribution
functions to the empirical regional growth curves.
Diff between nsRFA versions 0.6-7 dated 2009-03-26 and 0.6-8 dated 2009-04-14
DESCRIPTION | 8 +-- R/GOFlaio2004.R | 60 ++++++++++++----------- R/GOFmontecarlo.R | 106 +++++++++++++++++++++++++++++++++++++++-- inst/doc/Fig1ElamirSeheult.pdf |binary inst/doc/MSClaio2008.pdf |binary inst/doc/nsRFA_ex01.pdf |binary inst/doc/nsRFA_ex02.pdf |binary man/GOFmontecarlo.Rd | 10 +++ man/nsRFA-package.Rd | 1 9 files changed, 148 insertions(+), 37 deletions(-)
Author: Arthur Allignol
Title: Nelson-Aalen estimator of the cumulative hazard in multistate
models
Description: This package computes the Nelson-Aalen estimator of the
cumulative transition hazard for multistate models.
Diff between mvna versions 1.1-8 dated 2009-02-01 and 1.1-9 dated 2009-04-14
ChangeLog | 21 ++++++++++++++------- DESCRIPTION | 16 ++++++++++------ data/abortion.txt |only inst |only man/abortion.Rd |only man/mvna.Rd | 19 +++++++++++++++++-- 6 files changed, 41 insertions(+), 15 deletions(-)
Author: Christopher Jackson
Diff between msm versions 0.8.1 dated 2008-07-28 and 0.8.2 dated 2009-04-14
Title: Multi-state Markov and hidden Markov models in continuous time
Description: Functions for fitting general continuous-time Markov and
hidden Markov multi-state models to longitudinal data. Both
Markov transition rates and the hidden Markov output process
can be modelled in terms of covariates. A variety of
observation schemes are supported, including processes observed
at arbitrary times, completely-observed processes, and censored
states.
ChangeLog | 19 +++++++++++++++++++
DESCRIPTION | 33 ++++++++++++++++++---------------
R/boot.R | 6 +++---
R/msm.R | 5 ++---
R/outputs.R | 25 ++++++++++++++++++++++---
R/pearson.R | 4 +++-
R/utils.R | 2 +-
inst/NEWS | 10 ++++++++++
inst/doc/Rplots.pdf |only
inst/doc/msm-manual.pdf |binary
man/msm.Rd | 23 +++++++++++++++++------
man/simmulti.msm.Rd | 2 +-
man/summary.msm.Rd | 2 +-
man/surface.msm.Rd | 4 ++--
src/doc |only
tests/simple.R | 4 ++++
16 files changed, 103 insertions(+), 36 deletions(-)
Author: Luc Wouters
Diff between mpm versions 1.0-12 dated 2008-11-17 and 1.0-13 dated 2009-04-14
Title: Multivariate Projection Methods
Description: Exploratory graphical analysis of multivariate data,
specifically gene expression data with different projection
methods: principal component analysis, correspondence analysis,
spectral map analysis.
DESCRIPTION | 28 +++++++++++++++-------------
R/mpm.R | 2 +-
R/plot.mpm.R | 2 +-
inst/NEWS | 14 ++++++++------
4 files changed, 25 insertions(+), 21 deletions(-)
Author: Jared O'Connell
Diff between mhsmm versions 0.2.1 dated 2009-04-04 and 0.2.3 dated 2009-04-14
Title: Parameter estimation and prediction for hidden Markov and
semi-Markov models for data with multiple observation sequences
Description: Parameter estimation and prediction for hidden Markov and
semi-Markov models for data with multiple observation
sequences. The times must be equidistant but missing values of
the observables are allowed. The observables are allowed to be
multivariate. It is possible to have multiple sequences of
data. Estimation of the parameters of the models are made using
EM--algorithms. Computationally demanding parts of the
algorithm are implemented in C for performance. Finally, the
package is designed to allow users to specify their own
emission distributions, giving flexibility in the type of data
that may be analysed.
DESCRIPTION | 6 +++---
R/hmm_functions.R | 2 +-
R/hsmm_functions.R | 5 +++--
man/sim.mc.Rd | 8 +++++++-
4 files changed, 14 insertions(+), 7 deletions(-)
Author: Charles J. Geyer
Diff between mcmc versions 0.5-1 dated 2005-09-17 and 0.6 dated 2009-04-14
Title: Markov Chain Monte Carlo
Description: functions for Markov chain Monte Carlo (MCMC).
mcmc-0.5-1/mcmc/inst/doc/demo.R |only
mcmc-0.6/mcmc/ChangeLog | 2
mcmc-0.6/mcmc/DESCRIPTION | 14 +-
mcmc-0.6/mcmc/NAMESPACE | 1
mcmc-0.6/mcmc/R/initseq.R |only
mcmc-0.6/mcmc/inst/doc/Makefile | 2
mcmc-0.6/mcmc/inst/doc/demo.Rnw | 171 ++++++++++++++++++++++--
mcmc-0.6/mcmc/inst/doc/demo.pdf |binary
mcmc-0.6/mcmc/inst/doc/demo.tex | 236 +++++++++++++++++++++++++++++-----
mcmc-0.6/mcmc/man/initseq.Rd |only
mcmc-0.6/mcmc/src/initseq.c |only
mcmc-0.6/mcmc/tests/initseq.R |only
mcmc-0.6/mcmc/tests/initseq.Rout.save |only
mcmc-0.6/mcmc/tests/logit.Rout.save | 13 +
14 files changed, 382 insertions(+), 57 deletions(-)
Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer
J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko,
Stéphane Dray, David Forrest, Patrick Giraudoux, Duncan
Golicher, Virgilio Gómez Rubio, Patrick Hausmann, Thomas
Jagger, Sebastian P. Luque, Don MacQueen, Andrew Niccolai and
Tom Short
Title: Tools for reading and handling spatial objects
Description: Set of tools for manipulating and reading geographic data,
in particular ESRI shapefiles; C code used from shapelib. It
includes binary access to GSHHS shoreline files. The package
also provides interface wrappers for exchanging spatial objects
with packages such as PBSmapping, spatstat, maps, RArcInfo,
Stata tmap, WinBUGS, Mondrian, and others.
Diff between maptools versions 0.7-21 dated 2009-03-29 and 0.7-22 dated 2009-04-14
ChangeLog | 5 +++++ DESCRIPTION | 8 ++++---- R/spatstat1.R | 40 ++++++++++++++++++++++------------------ inst/ChangeLog | 5 +++++ 4 files changed, 36 insertions(+), 22 deletions(-)
Author: Gabor Csardi
Diff between igraph versions 0.5.1 dated 2008-07-12 and 0.5.2 dated 2009-04-14
Title: Routines for simple graphs, network analysis.
Description: Routines for simple graphs and network analysis. igraph
can handle large graphs very well and provides functions for
generating random and regular graphs, graph visualization,
centrality indices and much more.
igraph-0.5.1/igraph/ChangeLog.orig |only
igraph-0.5.1/igraph/ChangeLog.rej |only
igraph-0.5.2/igraph/ChangeLog | 129 ++
igraph-0.5.2/igraph/DESCRIPTION | 21
igraph-0.5.2/igraph/NAMESPACE | 16
igraph-0.5.2/igraph/R/CohesiveBlocks.R | 604 +++------
igraph-0.5.2/igraph/R/attributes.R | 20
igraph-0.5.2/igraph/R/auto.R | 132 ++
igraph-0.5.2/igraph/R/conversion.R | 130 ++
igraph-0.5.2/igraph/R/flow.R | 12
igraph-0.5.2/igraph/R/foreign.R | 53
igraph-0.5.2/igraph/R/layout.R | 15
igraph-0.5.2/igraph/R/package.R | 5
igraph-0.5.2/igraph/R/plot.R | 85 -
igraph-0.5.2/igraph/R/plot.common.R | 11
igraph-0.5.2/igraph/R/plot.shapes.R | 2
igraph-0.5.2/igraph/R/print.R | 5
igraph-0.5.2/igraph/R/socnet.R |only
igraph-0.5.2/igraph/R/structural.properties.R | 41
igraph-0.5.2/igraph/R/structure.generators.R | 182 ++
igraph-0.5.2/igraph/R/tkplot.R | 54
igraph-0.5.2/igraph/configure | 1091 +++++++++++++++--
igraph-0.5.2/igraph/configure.win | 13
igraph-0.5.2/igraph/inst/html_library.license.terms |only
igraph-0.5.2/igraph/inst/html_library.tcl |only
igraph-0.5.2/igraph/inst/igraph.gif |only
igraph-0.5.2/igraph/inst/my_html_library.tcl |only
igraph-0.5.2/igraph/inst/tkigraph_help |only
igraph-0.5.2/igraph/man/aaa-igraph-package.Rd | 5
igraph-0.5.2/igraph/man/alpha.centrality.Rd | 5
igraph-0.5.2/igraph/man/arpack.Rd | 16
igraph-0.5.2/igraph/man/betweenness.Rd | 6
igraph-0.5.2/igraph/man/biconnected.components.Rd | 18
igraph-0.5.2/igraph/man/bipartite.projection.Rd |only
igraph-0.5.2/igraph/man/canonical.permutation.Rd | 32
igraph-0.5.2/igraph/man/cliques.Rd | 6
igraph-0.5.2/igraph/man/clusters.Rd | 15
igraph-0.5.2/igraph/man/cohesive.blocks.Rd | 59
igraph-0.5.2/igraph/man/community.edge.betweenness.Rd | 25
igraph-0.5.2/igraph/man/community.structure.Rd | 6
igraph-0.5.2/igraph/man/degree.sequence.game.Rd | 14
igraph-0.5.2/igraph/man/dyad.census.Rd | 8
igraph-0.5.2/igraph/man/evcent.Rd | 12
igraph-0.5.2/igraph/man/fastgreedy.community.Rd | 26
igraph-0.5.2/igraph/man/get.incidence.Rd |only
igraph-0.5.2/igraph/man/girth.Rd | 10
igraph-0.5.2/igraph/man/graph.automorphisms.Rd | 20
igraph-0.5.2/igraph/man/graph.bipartite.Rd |only
igraph-0.5.2/igraph/man/graph.full.bipartite.Rd |only
igraph-0.5.2/igraph/man/graph.incidence.Rd |only
igraph-0.5.2/igraph/man/graph.isomorphism.Rd | 64
igraph-0.5.2/igraph/man/graph.knn.Rd |only
igraph-0.5.2/igraph/man/graph.maxflow.Rd | 22
igraph-0.5.2/igraph/man/graph.strength.Rd |only
igraph-0.5.2/igraph/man/independent.sets.Rd | 14
igraph-0.5.2/igraph/man/is.bipartite.Rd |only
igraph-0.5.2/igraph/man/iterators.Rd | 40
igraph-0.5.2/igraph/man/kleinberg.Rd | 14
igraph-0.5.2/igraph/man/label.propagation.community.Rd |only
igraph-0.5.2/igraph/man/layout.drl.Rd | 9
igraph-0.5.2/igraph/man/leading.eigenvector.Rd | 58
igraph-0.5.2/igraph/man/page.rank.Rd | 14
igraph-0.5.2/igraph/man/plot.bgraph.Rd | 2
igraph-0.5.2/igraph/man/plot.common.Rd | 15
igraph-0.5.2/igraph/man/power.law.fit.Rd | 4
igraph-0.5.2/igraph/man/print.graph.Rd | 3
igraph-0.5.2/igraph/man/read.graph.Rd | 13
igraph-0.5.2/igraph/man/shortest.paths.Rd | 16
igraph-0.5.2/igraph/man/spinglass.community.Rd | 36
igraph-0.5.2/igraph/man/tkigraph.Rd |only
igraph-0.5.2/igraph/man/tkplot.Rd | 4
igraph-0.5.2/igraph/man/unfold.tree.Rd |only
igraph-0.5.2/igraph/man/walktrap.community.Rd | 36
igraph-0.5.2/igraph/man/write.graph.Rd | 3
igraph-0.5.2/igraph/src/DensityGrid_3d.cpp |only
igraph-0.5.2/igraph/src/DensityGrid_3d.h |only
igraph-0.5.2/igraph/src/Makevars | 2
igraph-0.5.2/igraph/src/Makevars.win | 2
igraph-0.5.2/igraph/src/adjlist.c | 1
igraph-0.5.2/igraph/src/atlas.c | 1
igraph-0.5.2/igraph/src/attributes.c | 1
igraph-0.5.2/igraph/src/attributes.h | 61
igraph-0.5.2/igraph/src/basic_query.c | 27
igraph-0.5.2/igraph/src/bfgs.c | 1
igraph-0.5.2/igraph/src/bipartite.c |only
igraph-0.5.2/igraph/src/bliss.cc | 9
igraph-0.5.2/igraph/src/bliss_bignum.hh | 3
igraph-0.5.2/igraph/src/bliss_graph.cc | 47
igraph-0.5.2/igraph/src/bliss_graph.hh | 2
igraph-0.5.2/igraph/src/cattributes.c | 88 +
igraph-0.5.2/igraph/src/centrality.c | 1
igraph-0.5.2/igraph/src/cliques.c | 52
igraph-0.5.2/igraph/src/clustertool.cpp | 4
igraph-0.5.2/igraph/src/cocitation.c | 1
igraph-0.5.2/igraph/src/community.c | 260 +++-
igraph-0.5.2/igraph/src/components.c | 1
igraph-0.5.2/igraph/src/config.h.in | 93 +
igraph-0.5.2/igraph/src/conversion.c | 1
igraph-0.5.2/igraph/src/cores.c | 1
igraph-0.5.2/igraph/src/d_lg10.c | 2
igraph-0.5.2/igraph/src/d_sign.c | 2
igraph-0.5.2/igraph/src/dasum.c | 2
igraph-0.5.2/igraph/src/daxpy.c | 2
igraph-0.5.2/igraph/src/dcopy.c | 2
igraph-0.5.2/igraph/src/ddot.c | 2
igraph-0.5.2/igraph/src/dgemv.c | 2
igraph-0.5.2/igraph/src/dgeqr2.c | 2
igraph-0.5.2/igraph/src/dger.c | 2
igraph-0.5.2/igraph/src/dgetv0.c | 2
igraph-0.5.2/igraph/src/dlabad.c | 2
igraph-0.5.2/igraph/src/dlacon.c | 2
igraph-0.5.2/igraph/src/dlacpy.c | 2
igraph-0.5.2/igraph/src/dladiv.c | 2
igraph-0.5.2/igraph/src/dlae2.c | 2
igraph-0.5.2/igraph/src/dlaev2.c | 2
igraph-0.5.2/igraph/src/dlaexc.c | 2
igraph-0.5.2/igraph/src/dlahqr.c | 2
igraph-0.5.2/igraph/src/dlaln2.c | 2
igraph-0.5.2/igraph/src/dlamch.c | 4
igraph-0.5.2/igraph/src/dlange.c | 2
igraph-0.5.2/igraph/src/dlanhs.c | 2
igraph-0.5.2/igraph/src/dlanst.c | 2
igraph-0.5.2/igraph/src/dlanv2.c | 2
igraph-0.5.2/igraph/src/dlapy2.c | 2
igraph-0.5.2/igraph/src/dlaqrb.c | 2
igraph-0.5.2/igraph/src/dlarf.c | 2
igraph-0.5.2/igraph/src/dlarfg.c | 2
igraph-0.5.2/igraph/src/dlarfx.c | 2
igraph-0.5.2/igraph/src/dlarnv.c | 2
igraph-0.5.2/igraph/src/dlartg.c | 2
igraph-0.5.2/igraph/src/dlaruv.c | 2
igraph-0.5.2/igraph/src/dlascl.c | 2
igraph-0.5.2/igraph/src/dlaset.c | 2
igraph-0.5.2/igraph/src/dlasr.c | 2
igraph-0.5.2/igraph/src/dlasrt.c | 2
igraph-0.5.2/igraph/src/dlassq.c | 2
igraph-0.5.2/igraph/src/dlasy2.c | 2
igraph-0.5.2/igraph/src/dmout.c | 2
igraph-0.5.2/igraph/src/dnaitr.c | 2
igraph-0.5.2/igraph/src/dnapps.c | 2
igraph-0.5.2/igraph/src/dnaup2.c | 2
igraph-0.5.2/igraph/src/dnaupd.c | 2
igraph-0.5.2/igraph/src/dnconv.c | 14
igraph-0.5.2/igraph/src/dneigh.c | 2
igraph-0.5.2/igraph/src/dneupd.c | 16
igraph-0.5.2/igraph/src/dngets.c | 2
igraph-0.5.2/igraph/src/dnrm2.c | 2
igraph-0.5.2/igraph/src/dorm2r.c | 2
igraph-0.5.2/igraph/src/dqueue.pmt | 1
igraph-0.5.2/igraph/src/drl_Node_3d.h |only
igraph-0.5.2/igraph/src/drl_graph.cpp | 38
igraph-0.5.2/igraph/src/drl_graph.h | 1
igraph-0.5.2/igraph/src/drl_graph_3d.cpp |only
igraph-0.5.2/igraph/src/drl_graph_3d.h |only
igraph-0.5.2/igraph/src/drl_layout_3d.cpp |only
igraph-0.5.2/igraph/src/drl_layout_3d.h |only
igraph-0.5.2/igraph/src/drl_parse.cpp | 1
igraph-0.5.2/igraph/src/drot.c | 2
igraph-0.5.2/igraph/src/dsaitr.c | 2
igraph-0.5.2/igraph/src/dsapps.c | 2
igraph-0.5.2/igraph/src/dsaup2.c | 2
igraph-0.5.2/igraph/src/dsaupd.c | 2
igraph-0.5.2/igraph/src/dscal.c | 2
igraph-0.5.2/igraph/src/dsconv.c | 14
igraph-0.5.2/igraph/src/dseigt.c | 2
igraph-0.5.2/igraph/src/dsesrt.c | 2
igraph-0.5.2/igraph/src/dseupd.c | 18
igraph-0.5.2/igraph/src/dsgets.c | 2
igraph-0.5.2/igraph/src/dsortc.c | 2
igraph-0.5.2/igraph/src/dsortr.c | 2
igraph-0.5.2/igraph/src/dstatn.c | 2
igraph-0.5.2/igraph/src/dstats.c | 2
igraph-0.5.2/igraph/src/dsteqr.c | 2
igraph-0.5.2/igraph/src/dstqrb.c | 2
igraph-0.5.2/igraph/src/dswap.c | 2
igraph-0.5.2/igraph/src/dtrevc.c | 2
igraph-0.5.2/igraph/src/dtrexc.c | 2
igraph-0.5.2/igraph/src/dtrmm.c | 2
igraph-0.5.2/igraph/src/dtrsen.c | 2
igraph-0.5.2/igraph/src/dtrsyl.c | 2
igraph-0.5.2/igraph/src/dvout.c | 2
igraph-0.5.2/igraph/src/error.c | 4
igraph-0.5.2/igraph/src/error.h | 4
igraph-0.5.2/igraph/src/etime_.c | 5
igraph-0.5.2/igraph/src/evolver_cit.c | 1
igraph-0.5.2/igraph/src/fast_community.c | 4
igraph-0.5.2/igraph/src/flow.c | 1
igraph-0.5.2/igraph/src/foreign-gml-lexer.c | 116 -
igraph-0.5.2/igraph/src/foreign-gml-parser.c | 58
igraph-0.5.2/igraph/src/foreign-gml-parser.h | 2
igraph-0.5.2/igraph/src/foreign-graphml.c | 54
igraph-0.5.2/igraph/src/foreign-lgl-lexer.c | 108 -
igraph-0.5.2/igraph/src/foreign-lgl-parser.c | 25
igraph-0.5.2/igraph/src/foreign-lgl-parser.h | 2
igraph-0.5.2/igraph/src/foreign-ncol-lexer.c | 106 -
igraph-0.5.2/igraph/src/foreign-ncol-parser.c | 21
igraph-0.5.2/igraph/src/foreign-ncol-parser.h | 2
igraph-0.5.2/igraph/src/foreign-pajek-lexer.c | 190 +-
igraph-0.5.2/igraph/src/foreign-pajek-parser.c | 202 +--
igraph-0.5.2/igraph/src/foreign-pajek-parser.h | 2
igraph-0.5.2/igraph/src/foreign.c | 39
igraph-0.5.2/igraph/src/forestfire.c | 1
igraph-0.5.2/igraph/src/games.c | 1
igraph-0.5.2/igraph/src/gengraph_degree_sequence.cpp | 5
igraph-0.5.2/igraph/src/gengraph_graph_molloy_hash.cpp | 3
igraph-0.5.2/igraph/src/gengraph_mr-connected.cpp | 9
igraph-0.5.2/igraph/src/gml_tree.c | 1
igraph-0.5.2/igraph/src/heap.c | 7
igraph-0.5.2/igraph/src/heap.pmt | 1
igraph-0.5.2/igraph/src/idamax.c | 2
igraph-0.5.2/igraph/src/igraph.h | 85 +
igraph-0.5.2/igraph/src/igraph_buckets.c | 1
igraph-0.5.2/igraph/src/igraph_grid.c | 1
igraph-0.5.2/igraph/src/igraph_hashtable.c | 1
igraph-0.5.2/igraph/src/igraph_math.h |only
igraph-0.5.2/igraph/src/igraph_psumtree.c | 1
igraph-0.5.2/igraph/src/igraph_set.c | 1
igraph-0.5.2/igraph/src/igraph_strvector.c | 1
igraph-0.5.2/igraph/src/igraph_trie.c | 1
igraph-0.5.2/igraph/src/interrupt.c | 1
igraph-0.5.2/igraph/src/iterators.c | 5
igraph-0.5.2/igraph/src/ivout.c | 2
igraph-0.5.2/igraph/src/layout.c | 2
igraph-0.5.2/igraph/src/lsame.c | 2
igraph-0.5.2/igraph/src/math.c | 200 +++
igraph-0.5.2/igraph/src/matrix.pmt | 2
igraph-0.5.2/igraph/src/measure_dynamics.c | 1
igraph-0.5.2/igraph/src/memory.c | 1
igraph-0.5.2/igraph/src/motifs.c | 1
igraph-0.5.2/igraph/src/operators.c | 1
igraph-0.5.2/igraph/src/other.c | 24
igraph-0.5.2/igraph/src/pottsmodel_2.cpp | 29
igraph-0.5.2/igraph/src/pow_dd.c | 2
igraph-0.5.2/igraph/src/pow_di.c | 2
igraph-0.5.2/igraph/src/progress.c | 3
igraph-0.5.2/igraph/src/random.c | 1
igraph-0.5.2/igraph/src/revolver_cit.c | 1
igraph-0.5.2/igraph/src/revolver_grow.c | 1
igraph-0.5.2/igraph/src/revolver_ml_cit.c | 9
igraph-0.5.2/igraph/src/rinterface.c | 617 +++++++++
igraph-0.5.2/igraph/src/s_cmp.c | 2
igraph-0.5.2/igraph/src/s_copy.c | 2
igraph-0.5.2/igraph/src/second.c | 2
igraph-0.5.2/igraph/src/spectral_properties.c | 1
igraph-0.5.2/igraph/src/spmatrix.c | 1
igraph-0.5.2/igraph/src/stack.pmt | 1
igraph-0.5.2/igraph/src/structural_properties.c | 599 +++++++++
igraph-0.5.2/igraph/src/structure_generators.c | 1
igraph-0.5.2/igraph/src/topology.c | 3
igraph-0.5.2/igraph/src/type_indexededgelist.c | 233 ++-
igraph-0.5.2/igraph/src/types.h | 33
igraph-0.5.2/igraph/src/vector.c | 1
igraph-0.5.2/igraph/src/vector.h | 1
igraph-0.5.2/igraph/src/vector.pmt | 39
igraph-0.5.2/igraph/src/vector_ptr.c | 12
igraph-0.5.2/igraph/src/visitors.c | 1
igraph-0.5.2/igraph/src/walktrap.cpp | 2
igraph-0.5.2/igraph/src/xerbla.c | 2
258 files changed, 5363 insertions(+), 1721 deletions(-)
Author: Matthew Vavrek
Diff between fossil versions 0.2.0 dated 2008-09-28 and 0.2.1 dated 2009-04-14
Title: Palaeoecological and Palaeogeographical Analysis Tools
Description: A set of analytical tools useful in analysing ecological
and geographical data sets, both ancient and modern. The
package includes functions for estimating species richness
(Chao 1 and 2, ACE, ICE, Jacknife), shared species/beta
diversity, species area curves and geographic distances and
areas.
DESCRIPTION | 36 ++++++++++++++----------
R/dino.mst.R | 78 ++++++++++++++++++++++++------------------------------
inst |only
man/dino.mst.Rd | 4 ++
man/earth.poly.Rd | 13 +++------
man/spp.est.Rd | 5 ++-
6 files changed, 67 insertions(+), 69 deletions(-)
Author: Karsten Tabelow
Diff between fmri versions 1.2-6 dated 2008-05-19 and 1.3 dated 2009-04-14
Title: Analysis of fMRI experiments
Description: The library contains R-functions to perform an fmri
analysis as described in Tabelow, K., Polzehl, J., Voss, H.U.,
and Spokoiny, V. Analysing fMRI experiments with structure
adaptive smoothing procedures, NeuroImage, 33:55-62 (2006).
DESCRIPTION | 30 -
HISTORY | 28 +
NAMESPACE | 2
R/aws.r | 507 +++++++++++++++++-----------
R/detrend.R |only
R/fmri.R | 136 +++++--
R/fmriGUI.r |only
R/io.R | 83 ++--
R/lm.R | 11
R/misc.r | 45 ++
R/ngca.r | 107 ++++-
R/segm.r |only
README | 12
inst |only
man/fmri.design.Rd | 5
man/fmri.detrend.Rd |only
man/fmri.gui.Rd |only
man/fmri.lm.Rd | 10
man/fmri.pvalue.Rd | 10
man/fmri.smooth.Rd | 21 -
man/fmri.stimulus.Rd | 7
man/ngca.Rd | 8
man/plot.fmridata.Rd | 9
man/print.fmridata.Rd | 5
man/read.AFNI.Rd | 7
man/read.ANALYZE.Rd | 8
man/read.DICOM.Rd | 7
man/read.NIFTI.Rd | 10
man/write.AFNI.Rd | 5
man/write.ANALYZE.Rd | 5
man/write.NIFTI.Rd | 5
src/Makevars |only
src/Rentries.c |only
src/fastica.f |only
src/misc.f | 263 +++++++++++++-
src/ngca.f | 250 +++++++++----
src/segm3D.f |only
src/vaws3D.f | 904 +++++++-------------------------------------------
38 files changed, 1328 insertions(+), 1172 deletions(-)
Author: Tarn Duong
Diff between feature versions 1.2.2 dated 2009-02-16 and 1.2.3 dated 2009-04-14
Title: Feature significance for multivariate kernel density estimation
Description: Feature significance for multivariate kernel density
estimation
feature-1.2.2/feature/R-temp |only
feature-1.2.2/feature/R/dfltCounts.R |only
feature-1.2.2/feature/R/linbin.R |only
feature-1.2.2/feature/R/linbin2D.R |only
feature-1.2.2/feature/R/linbin3D.R |only
feature-1.2.2/feature/R/linbin4D.R |only
feature-1.2.2/feature/R/symconv.R |only
feature-1.2.2/feature/R/symconv2D.R |only
feature-1.2.2/feature/R/symconv3D.R |only
feature-1.2.2/feature/R/symconv4D.R |only
feature-1.2.2/feature/Rplots.pdf |only
feature-1.2.2/feature/src |only
feature-1.2.3/feature/DESCRIPTION | 15 +++++++++------
feature-1.2.3/feature/NAMESPACE | 7 +++----
feature-1.2.3/feature/R-future |only
feature-1.2.3/feature/R/addSignifFeatureRegion.R | 15 +++++----------
feature-1.2.3/feature/R/featureSignifGUI.R | 1 +
feature-1.2.3/feature/inst/doc/feature.pdf |binary
feature-1.2.3/feature/man/featureSignifGUI.Rd | 4 ++--
19 files changed, 20 insertions(+), 22 deletions(-)
Author: Jeff Hallman
Diff between fame versions 2.5 dated 2009-01-22 and 2.6 dated 2009-04-14
Title: Interface for FAME time series database
Description: Read and write FAME databases.
DESCRIPTION | 20 +++++++++++---------
NEWS | 4 ++++
man/getfame.Rd | 15 +++++----------
man/getfameAttribute.Rd | 9 ++-------
4 files changed, 22 insertions(+), 26 deletions(-)
Author: Arthur Allignol
Title: Empirical Transition Matrix
Description: Matrix of transition probabilities for any
time-inhomogeneous multistate model with finite state space
Diff between etm versions 0.3-7 dated 2009-02-04 and 0.4-0 dated 2009-04-14
ChangeLog | 46 +++++++++++++++++++++++++--------------------- DESCRIPTION | 13 ++++++++----- R/ci.transfo.R |only R/summary.etm.R | 41 ++++++++++++++++------------------------- R/xyplot.etm.R | 53 +++++++++++++++++++++++++++-------------------------- data/abortion.txt |only man/abortion.Rd |only man/etm.Rd | 25 ++++++++++++++++++++++++- man/plot.etm.Rd | 4 ++-- man/summary.etm.Rd | 13 ++++++++++++- man/xyplot.etm.Rd | 19 ++++++++++++++++--- 11 files changed, 130 insertions(+), 84 deletions(-)
Author: Christian Ritz
Diff between drc versions 1.6-1 dated 2009-03-25 and 1.6-3 dated 2009-04-14
Title: Analysis of dose-response curves
Description: Analysis of one or multiple curves with focus on
concentration-response, dose-response and time-response curves
used, for example in biology, environmental sciences, medicine,
pharmacology, toxicology.
drc-1.6-1/drc/R/drmEMbinomial.r |only
drc-1.6-1/drc/R/drmEMhv.R |only
drc-1.6-1/drc/R/drmEMvp.R |only
drc-1.6-1/drc/R/drmPoisson.R |only
drc-1.6-1/drc/R/scaleXY.R |only
drc-1.6-1/drc/R/sumbin.R |only
drc-1.6-3/drc/DESCRIPTION | 10 -
drc-1.6-3/drc/NAMESPACE | 2
drc-1.6-3/drc/NEWS | 11 +
drc-1.6-3/drc/R/ED.drc.R | 83 ++++-------
drc-1.6-3/drc/R/MAX.R | 130 +-----------------
drc-1.6-3/drc/R/SI.R | 250 ++++++------------------------------
drc-1.6-3/drc/R/boxcox.drc.R | 2
drc-1.6-3/drc/R/coef.drc.R | 13 +
drc-1.6-3/drc/R/compParm.R | 77 ++++++-----
drc-1.6-3/drc/R/confint.drc.R | 11 -
drc-1.6-3/drc/R/drm.R | 87 ++++++++++--
drc-1.6-3/drc/R/drmEMPoisson.R |only
drc-1.6-3/drc/R/drmEMbinomial.R |only
drc-1.6-3/drc/R/drmEMls.R | 9 -
drc-1.6-3/drc/R/drmLOFbinomial.R |only
drc-1.6-3/drc/R/drmLOFls.R |only
drc-1.6-3/drc/R/drmOpt.R | 2
drc-1.6-3/drc/R/hewlett.R | 5
drc-1.6-3/drc/R/idrm.R | 165 ++++++++++++++---------
drc-1.6-3/drc/R/isobole.R | 1
drc-1.6-3/drc/R/logistic.R | 26 +--
drc-1.6-3/drc/R/mixture.R | 5
drc-1.6-3/drc/R/modelFit.R | 11 -
drc-1.6-3/drc/R/plot.drc.R | 250 ++++++++++++++++++++++++++----------
drc-1.6-3/drc/R/predict.drc.R | 13 -
drc-1.6-3/drc/R/print.summary.drc.R | 21 ++-
drc-1.6-3/drc/R/relpot.R | 8 -
drc-1.6-3/drc/R/resPrint.R |only
drc-1.6-3/drc/R/showNews.R |only
drc-1.6-3/drc/R/summary.drc.R | 98 ++++++++------
drc-1.6-3/drc/R/vcov.drc.R | 125 ++++++++++++++++--
drc-1.6-3/drc/man/ED.drc.Rd | 4
drc-1.6-3/drc/man/MAX.Rd | 4
drc-1.6-3/drc/man/SI.Rd | 21 +--
drc-1.6-3/drc/man/boxcox.drc.Rd | 5
drc-1.6-3/drc/man/compParm.Rd | 4
drc-1.6-3/drc/man/confint.drc.Rd | 4
drc-1.6-3/drc/man/drm.Rd | 4
drc-1.6-3/drc/man/earthworms.Rd | 25 ++-
drc-1.6-3/drc/man/logistic.Rd | 24 +--
drc-1.6-3/drc/man/plot.drc.Rd | 92 ++++++-------
drc-1.6-3/drc/man/summary.drc.Rd | 6
drc-1.6-3/drc/man/vcov.drc.Rd | 8 +
49 files changed, 859 insertions(+), 757 deletions(-)
Author: Stefano Iacus
Diff between cem versions 1.0.90 dated 2009-02-18 and 1.0.96 dated 2009-04-14
Title: CEM: Software for Coarsened Exact Matching
Description: This program implements the coarsened exact matching
algorithm (and many extensions) described in Stefano M. Iacus,
Gary King, and Giuseppe Porro, "Matching for Causal Inference
Without Balance Checking,"
http://gking.harvard.edu/files/abs/cem-abs.shtml
cem-1.0.90/cem/inst/doc/outdata1.csv |only
cem-1.0.90/cem/inst/doc/outdata2.csv |only
cem-1.0.90/cem/inst/doc/outdata3.csv |only
cem-1.0.90/cem/inst/doc/outdata4.csv |only
cem-1.0.90/cem/inst/doc/outdata5.csv |only
cem-1.0.96/cem/DESCRIPTION | 24
cem-1.0.96/cem/inst/doc/Rplots.pdf | 4
cem-1.0.96/cem/inst/doc/cem.Rnw | 59
cem-1.0.96/cem/inst/doc/cem.pdf | 5815 +++++++++++++++++------------------
cem-1.0.96/cem/inst/doc/coarsen1.pdf | 4
cem-1.0.96/cem/inst/doc/coarsen2.pdf | 4
cem-1.0.96/cem/inst/doc/index.shtml | 4
cem-1.0.96/cem/inst/doc/teff.pdf | 4
cem-1.0.96/cem/man/att.Rd | 3
cem-1.0.96/cem/man/cem.Rd | 4
15 files changed, 3038 insertions(+), 2887 deletions(-)
Author: Hsin-ya Lee
Diff between bear versions 2.3.0 dated 2009-03-09 and 2.3.1 dated 2009-04-14
Title: Average bioequivalence and bioavailability data analysis tool
Description: An average bioequivalence (ABE) and bioavailability data
analysis tool including sample size estimation,
noncompartmental analysis (NCA), ANOVA (lm) for a standard
RT/TR 2x2x2 crossover design and linear mixed effect model (lme
of nlme) for a 2-treatment, 2-sequence, with 2 periods or more
(i.e. 2x2x3/2x2x4) replicate design or a 2-treatment,
2-sequence, and 1-period parallel ABE study (2x2x1).
DESCRIPTION | 34 +++++----
R/BANOVA.r | 123 ++++++++++++++++++-----------------
R/NCAoutput.r | 8 +-
R/NCAplot.r | 66 ++++++++----------
R/Paradata.r |only
R/RepMIX.r | 52 +++++++-------
R/demopara.r |only
R/description_plot.r | 2
R/description_size.r | 11 ++-
R/description_size_para.r |only
R/description_version.r | 2
R/logdata.r | 150 +++++++++++++++++++++++++------------------
R/plotsingle.Rep.r | 16 ++--
R/plotsingle.para.r | 24 +-----
R/plotsingle.r | 39 +++++------
R/sizemenu.r | 20 ++++-
R/xtick.r |only
R/ytick.r |only
R/zzz.R | 2
man/Paradata.rd |only
man/demopara.rd |only
man/description_size_para.rd |only
man/xtick.rd |only
man/ytick.rd |only
24 files changed, 293 insertions(+), 256 deletions(-)
Author: David Hajage
Title: Export R objects to asciidoc or txt2tags
Description: Coerce R object to asciidoc or txt2tags syntax. Package
comes with two drivers for Sweave.
Diff between ascii versions 0.1 dated 2009-04-04 and 0.1.1 dated 2009-04-14
DESCRIPTION | 9 +++++---- NAMESPACE | 2 ++ NEWS |only R/asciiHmisc.r |only man/ascii.Rd | 5 +++++ 5 files changed, 12 insertions(+), 4 deletions(-)
Author: Karsten Tabelow
Diff between adimpro versions 0.7.1 dated 2008-10-07 and 0.7.2 dated 2009-04-14
Title: Adaptive Smoothing of Digital Images
Description: This package implements tools for manipulationg digital
images and the Propagation Separation approach by Polzehl and
Spokoiny (2006) for smoothing digital images.
DESCRIPTION | 27 +++++++++++++++------------
NAMESPACE | 1 +
R/aniso.r | 3 +--
R/awsimage.r | 31 ++++++++++++-------------------
R/io.R | 1 +
R/misc.r | 14 +++++++++++---
R/segment.r | 45 ++++++++++++++-------------------------------
man/adimpro.options.Rd | 2 +-
man/awsimage.Rd | 20 ++++++++++++--------
man/segment.Rd | 4 +---
src/segment.f | 39 +++++++++++++--------------------------
11 files changed, 82 insertions(+), 105 deletions(-)
Author: Paul Gilbert
Diff between TSodbc versions 2009.3-2 dated 2009-03-25 and 2009.3-3 dated 2009-04-14
Title: Time Series Database Interface extensions for ODBC
Description: TSodbc provides a ODBC interface for TSdbi.
DESCRIPTION | 12 ++++++------
NEWS | 5 +++++
inst/doc/TSodbc.Stex | 2 +-
3 files changed, 12 insertions(+), 7 deletions(-)
Author: Damian W. Betebenner
Diff between SGP versions 0.0-3 dated 2009-02-16 and 0.0-4 dated 2009-04-14
Title: Student Growth Percentile and Percentile Growth
Projection/Trajectory Functions
Description: Functions to calculate growth percentiles and percentile
growth projections/trajectories for students using large scale,
longitudinal assessment data. Functions use quantile
regression to estimate the conditional density associated with
each students achievement history. Percentile growth
projections/trajectories are calculated using the coefficient
matrices derived from the quantile regression analyses and
specify what percentile growth is required for students to
reach future achievement targets.
CITATION | 4
DESCRIPTION | 41 +-
LICENSE |only
NAMESPACE | 2
NEWS | 10
R/studentGrowthPercentiles.R | 801 +++++++++++++++++++++++-----------------
R/studentGrowthProjections.R | 418 ++++++++++----------
inst |only
man/SGP-package.Rd | 2
man/studentGrowthPercentiles.Rd | 88 +---
man/studentGrowthProjections.Rd | 150 +++----
11 files changed, 811 insertions(+), 705 deletions(-)
Author: David A. James and Saikat DebRoy
Title: R interface to the MySQL database
Description: Database interface and MySQL driver for R. This version
complies with the database interface definition as implemented
in the package DBI 0.2-2.
Diff between RMySQL versions 0.7-3 dated 2009-02-04 and 0.7-4 dated 2009-04-14
DESCRIPTION | 16 +++++++++------- inst/INSTALL | 2 ++ inst/NEWS | 6 ++++++ src/RS-DBI.c | 8 +++++--- src/RS-MySQL.c | 8 +++++--- 5 files changed, 27 insertions(+), 13 deletions(-)
Author: originally written by Andrew Gelman
Diff between R2WinBUGS versions 2.1-13 dated 2009-03-29 and 2.1-14 dated 2009-04-14
Title: Running WinBUGS and OpenBUGS from R / S-PLUS
Description: Using this package, it is possible to call a BUGS model,
summarize inferences and convergence in a table and graph, and
save the simulations in arrays for easy access in R / S-PLUS.
In S-PLUS, the openbugs functionality and the windows emulation
functionality is not yet available.
DESCRIPTION | 8 ++++----
R/bugs.R | 6 +++---
R/bugs.script.R | 4 +++-
R/openbugs.R | 6 +++---
inst/NEWS | 3 +++
inst/doc/R2WinBUGS.pdf | 6 +++---
man/bugs.Rd | 3 ++-
man/bugs.script.Rd | 3 ++-
man/openbugs.Rd | 4 ++--
9 files changed, 25 insertions(+), 18 deletions(-)
Author: Chun-Ying Lee, Yung-Jin Lee
Title: A Data Analysis Tool for Pharmacokinetics
Description: PKfit is a nonlinear regression (including a genetic
algorithm) program which was designed to perform model/curve
fitting and model simulations for pharmacokinetics.
Diff between PKfit versions 1.1.7 dated 2009-02-01 and 1.1.8 dated 2009-04-14
DESCRIPTION | 24 ++++++++++++++---------- R/extravascular-f.R | 2 +- 2 files changed, 15 insertions(+), 11 deletions(-)
Author: Jarrod Hadfield
Title: ML and MCMC Methods for Pedigree Reconstruction and Analysis
Description: The primary aim of MasterBayes is to use MCMC techniques
to integrate over uncertainty in pedigree configurations
estimated from molecular markers and phenotypic data. Emphasis
is put on the marginal distribution of parameters that relate
the phenotypic data to the pedigree. All simulation is done in
compiled C++ for efficency.
Diff between MasterBayes versions 2.42 dated 2009-03-06 and 2.43 dated 2009-04-14
DESCRIPTION | 19 R/MCMCped.R | 2 inst/doc/Figures/Tutorial.Rnw | 2 inst/doc/Tutorial-006.pdf | 73 inst/doc/Tutorial-007.pdf | 73 inst/doc/Tutorial-008.pdf | 81 inst/doc/Tutorial-009.pdf | 73 inst/doc/Tutorial-022.eps | 5874 ++++----- inst/doc/Tutorial-022.pdf | 7115 +++++------ inst/doc/Tutorial-027.eps | 6401 +++++----- inst/doc/Tutorial-027.pdf | 7129 +++++------ inst/doc/Tutorial-030.eps | 5627 ++++----- inst/doc/Tutorial-030.pdf | 6626 +++++----- inst/doc/Tutorial-035.eps |16438 +++++++++++++-------------- inst/doc/Tutorial-035.pdf |20155 ++++++++++++++++----------------- inst/doc/Tutorial-039.eps | 6185 +++++----- inst/doc/Tutorial-039.pdf | 6632 +++++----- inst/doc/Tutorial-044.eps | 5837 ++++----- inst/doc/Tutorial-044.pdf | 6629 +++++----- inst/doc/Tutorial-047.eps | 6004 ++++----- inst/doc/Tutorial-047.pdf | 6592 +++++----- inst/doc/Tutorial-050.eps | 3969 +++--- inst/doc/Tutorial-057.eps |15445 ++++++++++++------------- inst/doc/Tutorial-057.pdf |21133 +++++++++++++++++------------------ inst/doc/Tutorial-060.eps |16453 +++++++++++++-------------- inst/doc/Tutorial-060.pdf |21099 +++++++++++++++++----------------- inst/doc/Tutorial-063.eps | 6091 +++++----- inst/doc/Tutorial-063.pdf | 7114 +++++------ inst/doc/Tutorial-068.eps | 6174 +++++----- inst/doc/Tutorial-068.pdf | 7100 +++++------ inst/doc/Tutorial-070.eps | 6202 ++++------ inst/doc/Tutorial-070.pdf | 6899 +++++------ inst/doc/Tutorial-073.eps | 6202 +++++----- inst/doc/Tutorial-073.pdf | 7123 +++++------ inst/doc/Tutorial-076.eps | 6196 +++++----- inst/doc/Tutorial-076.pdf | 7126 +++++------ inst/doc/Tutorial-078.eps | 5446 ++++----- inst/doc/Tutorial-078.pdf | 6624 +++++----- inst/doc/Tutorial-081.eps | 6422 +++++----- inst/doc/Tutorial-081.pdf | 7053 +++++------ inst/doc/Tutorial-084.eps | 5874 ++++----- inst/doc/Tutorial-084.pdf | 7085 +++++------ inst/doc/Tutorial-087.eps | 6267 +++++----- inst/doc/Tutorial-087.pdf | 7118 +++++------ inst/doc/Tutorial-090.eps | 6413 +++++----- inst/doc/Tutorial-090.pdf | 7121 +++++------ inst/doc/Tutorial-093.eps | 5912 ++++----- inst/doc/Tutorial-093.pdf | 7107 +++++------ inst/doc/Tutorial-096.eps |10921 +++++++++--------- inst/doc/Tutorial-096.pdf |14148 +++++++++++------------ inst/doc/Tutorial-099.eps |13599 +++++++++++----------- inst/doc/Tutorial-099.pdf |14155 +++++++++++------------ inst/doc/Tutorial-EPP2Test.eps | 6422 +++++----- inst/doc/Tutorial-EPP2Test.pdf | 7053 +++++------ inst/doc/Tutorial-EPPmerge.eps | 5874 ++++----- inst/doc/Tutorial-EPPmerge.pdf | 7085 +++++------ inst/doc/Tutorial-Herm.eps | 5912 ++++----- inst/doc/Tutorial-Herm.pdf | 7107 +++++------ inst/doc/Tutorial-MGped.eps | 6413 +++++----- inst/doc/Tutorial-MGped.pdf | 7121 +++++------ inst/doc/Tutorial-model.DSconfig.eps | 3969 +++--- inst/doc/Tutorial-model.INT.cntr.eps |16453 +++++++++++++-------------- inst/doc/Tutorial-model.INT.cntr.pdf |21099 +++++++++++++++++----------------- inst/doc/Tutorial-model.INT.eps |15445 ++++++++++++------------- inst/doc/Tutorial-model.INT.pdf |21133 +++++++++++++++++------------------ inst/doc/Tutorial-model.ass.mat.eps | 6267 +++++----- inst/doc/Tutorial-model.ass.mat.pdf | 7118 +++++------ inst/doc/Tutorial-model.config.eps | 6004 ++++----- inst/doc/Tutorial-model.config.pdf | 6592 +++++----- inst/doc/Tutorial-model.miss.eps | 6174 +++++----- inst/doc/Tutorial-model.miss.pdf | 7100 +++++------ inst/doc/Tutorial-model.miss2.eps | 6196 +++++----- inst/doc/Tutorial-model.miss2.pdf | 7126 +++++------ inst/doc/Tutorial-model.miss2US.eps | 5446 ++++----- inst/doc/Tutorial-model.miss2US.pdf | 6624 +++++----- inst/doc/Tutorial-model.missTest.eps | 6202 +++++----- inst/doc/Tutorial-model.missTest.pdf | 7123 +++++------ inst/doc/Tutorial-model.missUS.eps | 6202 ++++------ inst/doc/Tutorial-model.missUS.pdf | 6899 +++++------ inst/doc/Tutorial-model.pedEE2.eps | 5837 ++++----- inst/doc/Tutorial-model.pedEE2.pdf | 6629 +++++----- inst/doc/Tutorial-model2beta.eps | 5874 ++++----- inst/doc/Tutorial-model2beta.pdf | 7115 +++++------ inst/doc/Tutorial-model3beta.eps | 6401 +++++----- inst/doc/Tutorial-model3beta.pdf | 7129 +++++------ inst/doc/Tutorial-model4US.eps | 5627 ++++----- inst/doc/Tutorial-model4US.pdf | 6626 +++++----- inst/doc/Tutorial-model5.eps |16438 +++++++++++++-------------- inst/doc/Tutorial-model5.pdf |20155 ++++++++++++++++----------------- inst/doc/Tutorial-model6US.eps | 6185 +++++----- inst/doc/Tutorial-model6US.pdf | 6632 +++++----- inst/doc/Tutorial-mon1.eps |10921 +++++++++--------- inst/doc/Tutorial-mon1.pdf |14148 +++++++++++------------ inst/doc/Tutorial-mon2.eps |13599 +++++++++++----------- inst/doc/Tutorial-mon2.pdf |14155 +++++++++++------------ inst/doc/Tutorial-ys.eps | 6091 +++++----- inst/doc/Tutorial-ys.pdf | 7114 +++++------ inst/doc/Tutorial.Rnw | 187 inst/doc/Tutorial.bbl |only inst/doc/Tutorial.blg |only inst/doc/Tutorial.pdf |binary man/varPed.Rd | 9 src/LikFunctions.cc | 178 src/SampG.cc | 17 104 files changed, 389454 insertions(+), 388930 deletions(-)
Author: Georg M. Goerg
Diff between LambertW versions 0.1.0 dated 2009-03-23 and 0.1.6 dated 2009-04-14
Title: Lambert W parameter estimation, plots, simulation (Skew
Analysis)
Description: Lambert W random variables (RV) offer a new way of dealing
with slightly skewed data. It is based on an input/ouput
framework - for details see References. This package contains
the most important functions to perform an adequate analysis.
Lambert W data can be simulated, parameters estimated and
results can be plotted in a proper way.
DESCRIPTION | 23 ++++++++++++--------
R/IGMM.default.R | 11 +++------
R/KS.test.t.R | 2 +
R/MLE_LambertW.R | 2 -
R/MLE_LambertW.default.R | 9 ++++---
R/dLambertW.R | 7 +++---
R/delta.GMM.R | 2 -
R/delta.test.R | 4 +--
R/igmm.r | 2 -
R/mom.LambertW.X.Gauss.R | 2 -
R/normfit.R | 4 +--
R/pLambertW.R | 10 ++++++--
R/p_1.R | 2 -
R/qLambertW.R | 36 +++++++++++++++++++++++++++----
R/qqLambertW.R | 45 ++++++++++++++++++++++-----------------
R/rLambertW.R | 10 ++++++--
R/summary.LWest.R | 18 ++++++++++++---
man/AA.Rd | 39 ++++++++++++++++++++++++++++++++--
man/H.Rd | 9 ++-----
man/H_delta.Rd | 6 +----
man/IGMM.Rd | 29 ++++++++++++++-----------
man/IGMM.default.Rd | 29 ++++++++++++++-----------
man/KS.test.t.Rd | 12 +++++++---
man/LambertW-package.Rd | 50 +++++++++++++++++++++++++++++---------------
man/MLE_LambertW.Rd | 45 ++++++++++++++++++++++-----------------
man/MLE_LambertW.default.Rd | 32 ++++++++++++++++++----------
man/W.Rd | 16 +++++++++-----
man/W_1.Rd | 15 +++++++++----
man/W_delta.Rd | 6 ++---
man/W_delta_1.Rd | 8 +++----
man/d1W.Rd | 4 +--
man/d1W_1.Rd | 2 -
man/dLambertW.Rd | 37 +++++++++++++++++++++++++-------
man/delta.01.Rd | 10 ++++----
man/delta.GMM.Rd | 16 ++++++--------
man/delta.test.Rd | 40 +++++++++++++++++++++++++++++------
man/get.input.Rd | 10 +++++++-
man/mc.Rd | 3 --
man/mom.LambertW.U.Gauss.Rd | 4 +--
man/mom.LambertW.X.Gauss.Rd | 22 ++++++++++++++-----
man/normfit.Rd | 37 ++++++++++++++++++++------------
man/pLambertW.Rd | 21 ++++++++++++++----
man/p_1.Rd | 14 ++++++++----
man/plot.LWest.Rd | 8 +++----
man/print.summary.LWest.Rd | 6 ++---
man/qLambertW.Rd | 18 ++++++++++++++-
man/qqLambertW.Rd | 12 +++++++---
man/rLambertW.Rd | 42 +++++++++++++++++++++++++++++-------
man/sd.Rd | 5 +---
man/summary.LWest.Rd | 17 ++++++--------
man/support.Rd | 11 +++++++--
man/vec.norm.Rd | 8 ++-----
52 files changed, 555 insertions(+), 277 deletions(-)
Author: Andreas Ruckstuhl, Thomas Unternaehrer, Rene Locher
Title: Utilities of Institute of Data Analyses and Process Design
(www.idp.zhaw.ch)
Description: The IDPmisc package contains different high-level graphics
functions for displaying large datasets, displaying circular
data in a very flexible way, finding local maxima, brewing
color ramps, drawing nice arrows, zooming 2D-plots, creating
figures with differently colored margin and plot region. In
addition, the package contains auxiliary functions for data
manipulation like omitting observations with irregular values
or selecting data by logical vectors, which include NAs. Other
functions are especially useful in spectroscopy and analyses of
environmental data: robust baseline fitting, finding peaks in
spectra.
Diff between IDPmisc versions 1.0.01 dated 2009-03-16 and 1.1.00 dated 2009-04-14
IDPmisc-1.0.01/IDPmisc/R/plotdat.R |only IDPmisc-1.1.00/IDPmisc/ChangeLog | 20 IDPmisc-1.1.00/IDPmisc/DESCRIPTION | 8 IDPmisc-1.1.00/IDPmisc/R/draw.leg.R | 13 IDPmisc-1.1.00/IDPmisc/R/general.control.R | 13 IDPmisc-1.1.00/IDPmisc/R/griddat.R |only IDPmisc-1.1.00/IDPmisc/R/ilagplot.R | 42 +- IDPmisc-1.1.00/IDPmisc/R/ipairs.R | 44 +- IDPmisc-1.1.00/IDPmisc/R/iplot.R | 42 +- IDPmisc-1.1.00/IDPmisc/R/iplotLegend.R | 7 IDPmisc-1.1.00/IDPmisc/R/iplotMain.R | 4 IDPmisc-1.1.00/IDPmisc/R/plot.page.R | 7 IDPmisc-1.1.00/IDPmisc/R/plot.rose.R | 539 +++++++++++++------------- IDPmisc-1.1.00/IDPmisc/R/rose.R | 6 IDPmisc-1.1.00/IDPmisc/R/rose.grob.R | 95 +++- IDPmisc-1.1.00/IDPmisc/R/segments.circle.R |only IDPmisc-1.1.00/IDPmisc/R/val.rose.R | 5 IDPmisc-1.1.00/IDPmisc/man/IDPmisc-package.Rd | 4 IDPmisc-1.1.00/IDPmisc/man/general.control.Rd | 11 IDPmisc-1.1.00/IDPmisc/man/ilagplot.Rd | 14 IDPmisc-1.1.00/IDPmisc/man/ipairs.Rd | 12 IDPmisc-1.1.00/IDPmisc/man/iplot.Rd | 11 IDPmisc-1.1.00/IDPmisc/man/pkg-internal.Rd | 12 IDPmisc-1.1.00/IDPmisc/man/plot.rose.Rd | 3 24 files changed, 517 insertions(+), 395 deletions(-)
Author: Miika Ahdesmaki, Konstantinos Fokianos, and Korbinian Strimmer.
Title: Identification of Periodically Expressed Genes
Description: The GeneCycle package implements the approaches of Wichert
et al. (2004), Ahdesmaki et al. (2005) and Ahdesmaki et al.
(2007) for detecting periodically expressed genes from gene
expression time series data.
Diff between GeneCycle versions 1.1.0 dated 2008-07-11 and 1.1.1 dated 2009-04-14
CHANGES | 13 +++++++++++++ DESCRIPTION | 25 ++++++++++++++----------- R/robust.spectrum.R | 20 ++++++++++---------- 3 files changed, 37 insertions(+), 21 deletions(-)
Author: Andrew Harris
Title: FITS (Flexible Image Transport System) utilities
Description: Utilities to read and write files in the FITS (Flexible
Image Transport System) format, a standard format in astronomy.
Present low-level routines allow: * Reading and parsing FITS
headers * Reading FITS images (multi-dimensional arrays) *
Reading FITS binary tables * Writing FITS images
(multi-dimensional arrays) Higher-level functions allow: *
Reading files composed of one or more headers and a single
(perhaps multidimensional) image or single bintable * Reading
bintables into data frames * Generating vectors for image array
axes * Scaling and writing images as 16-bit integers Known
incompletenesses are reading FITS ASCII table and random group
extensions, as well as bit, complex, and array descriptor data
types in binary tables.
Diff between FITSio versions 1.0-2 dated 2008-08-06 and 1.0-3 dated 2009-04-14
ChangeLog |only DESCRIPTION | 51 ++++++++++++++++++++++++-------------------------- R/readFrameFromFITS.R | 3 +- man/FITSio-package.Rd | 4 +-- 4 files changed, 29 insertions(+), 29 deletions(-)
Author: Diego Zardetto
Title: Estimation of Variance by Efficient Replication
Description: Delete-A-Group Jackknife replication. Calibration of
replicate weights. Estimates, standard errors and confidence
intervals for: totals, means, absolute and relative frequency
distributions, contingency tables, ratios, quantiles and
regression coefficients. Estimates, standard errors and
confidence intervals for user-defined estimators (even
non-analytic). Domain (subpopulation) estimation.
Diff between EVER versions 1.0 dated 2008-09-12 and 1.1 dated 2009-04-14
DESCRIPTION | 30 ++++++++++++++-------- NAMESPACE | 2 - R/bounds.hint.R |only R/g.range.R | 4 +- R/kott.quantile.R | 21 +++++++++++---- R/kott.ratio.R | 22 ++++++++++++---- R/kott.regcoef.R | 30 +++++++++++----------- R/kottby.R | 65 +++++++++++++++++++++++++++++++----------------- R/kottby.user.R | 47 ++++++++++++++++++++++++++++------ R/kottcalibrate.R | 4 +- R/z.grake.R | 4 +- R/z.ranger.R |only inst/NEWS |only inst/README | 4 ++ man/bounds.hint.Rd |only man/data.examples.Rd | 2 - man/g.range.Rd | 6 ++-- man/kott.addvars.Rd | 2 - man/kott.quantile.Rd | 2 + man/kott.ratio.Rd | 6 ++-- man/kott.regcoef.Rd | 6 ++-- man/kottby.Rd | 2 + man/kottby.user.Rd | 2 + man/kottcalibrate.Rd | 8 ++--- man/kottdesign.Rd | 8 ++--- man/pop.template.Rd | 2 - man/population.check.Rd | 8 ++--- 27 files changed, 191 insertions(+), 96 deletions(-)
Author: James Honaker
Diff between Amelia versions 1.1-33 dated 2008-07-28 and 1.2-0 dated 2009-04-14
Title: Amelia II: A Program for Missing Data
Description: Amelia II "multiply imputes" missing data in a single
cross-section (such as a survey), from a time series (like
variables collected for each year in a country), or from a
time-series-cross-sectional data set (such as collected by
years for each of several countries). Amelia II implements our
bootstrapping-based algorithm that gives essentially the same
answers as the standard IP or EMis approaches, is usually
considerably faster than existing approaches and can handle
many more variables. Unlike Amelia I and other statistically
rigorous imputation software, it virtually never crashes (but
please let us know if you find to the contrary!). The program
also generalizes existing approaches by allowing for trends in
time series across observations within a cross-sectional unit,
as well as priors that allow experts to incorporate beliefs
they have about the values of missing cells in their data.
Amelia II also includes useful diagnostics of the fit of
multiple imputation models. The program works from the R
command line or via a graphical user interface that does not
require users to know R.
Amelia-1.1-33/Amelia/man/am-internal.Rd |only
Amelia-1.2-0/Amelia/DESCRIPTION | 51
Amelia-1.2-0/Amelia/NAMESPACE |only
Amelia-1.2-0/Amelia/R/amcheck.r | 192 +--
Amelia-1.2-0/Amelia/R/ameliagui.r | 338 +++---
Amelia-1.2-0/Amelia/R/diag.r | 350 ++++--
Amelia-1.2-0/Amelia/R/emb.r | 460 ++++++--
Amelia-1.2-0/Amelia/R/missmap.R |only
Amelia-1.2-0/Amelia/R/plot.amelia.R |only
Amelia-1.2-0/Amelia/R/prep.r | 147 +-
Amelia-1.2-0/Amelia/R/print.amelia.R |only
Amelia-1.2-0/Amelia/R/summary.amelia.R |only
Amelia-1.2-0/Amelia/R/write.amelia.R |only
Amelia-1.2-0/Amelia/R/zzz.R |only
Amelia-1.2-0/Amelia/data |only
Amelia-1.2-0/Amelia/inst/doc/amelia.log | 92 -
Amelia-1.2-0/Amelia/inst/doc/amelia.pdf | 1485 ++++++++++++++---------------
Amelia-1.2-0/Amelia/inst/doc/amelia.tex | 5
Amelia-1.2-0/Amelia/inst/doc/index.shtml | 2
Amelia-1.2-0/Amelia/man/africa.Rd |only
Amelia-1.2-0/Amelia/man/amelia.Rd | 145 +-
Amelia-1.2-0/Amelia/man/ameliabind.Rd |only
Amelia-1.2-0/Amelia/man/compare.density.Rd |only
Amelia-1.2-0/Amelia/man/disperse.Rd |only
Amelia-1.2-0/Amelia/man/missmap.Rd |only
Amelia-1.2-0/Amelia/man/overimpute.Rd |only
Amelia-1.2-0/Amelia/man/plot.amelia.Rd |only
Amelia-1.2-0/Amelia/man/summary.amelia.Rd |only
Amelia-1.2-0/Amelia/man/tscsPlot.Rd |only
Amelia-1.2-0/Amelia/man/write.amelia.Rd |only
30 files changed, 1787 insertions(+), 1480 deletions(-)