Author: Hadley Wickham
Diff between plyr versions 0.1.6 dated 2009-04-15 and 0.1.7 dated 2009-04-15
Title: Tools for splitting, applying and combining data
Description: plyr is a set of tools that solves a common set of
problems: you need to break a big problem down into manageable
pieces, operate on each pieces and then put all the pieces back
together. For example, you might want to fit a model to each
spatial location or time point in your study, summarise data by
panels or collapse high-dimensional arrays to simpler summary
statistics.
DESCRIPTION | 6 +++---
NEWS | 6 +++++-
R/rbind.r | 21 ++++++++++++++++-----
3 files changed, 24 insertions(+), 9 deletions(-)
More information about markerSearchPower at CRAN
Permanent link
Author: Peter Dalgaard
Title: Introductory Statistics with R
Description: Data sets and scripts for text examples and exercises in
P. Dalgaard (2008), `Introductory Statistics with R', 2nd ed.,
Springer Verlag, ISBN 978-0387790534.
Diff between ISwR versions 2.0-3 dated 2009-02-20 and 2.0-4 dated 2009-04-15
DESCRIPTION | 13 ++-- inst/scripts/ch14.R | 4 - man/melanom.Rd | 2 tests/allscripts.R | 130 ++++++++++++++++++++++----------------------- tests/allscripts.Rout.save | 8 +- 5 files changed, 80 insertions(+), 77 deletions(-)
Author: James Honaker
Diff between Amelia versions 1.2-0 dated 2009-04-14 and 1.2-1 dated 2009-04-15
Title: Amelia II: A Program for Missing Data
Description: Amelia II "multiply imputes" missing data in a single
cross-section (such as a survey), from a time series (like
variables collected for each year in a country), or from a
time-series-cross-sectional data set (such as collected by
years for each of several countries). Amelia II implements our
bootstrapping-based algorithm that gives essentially the same
answers as the standard IP or EMis approaches, is usually
considerably faster than existing approaches and can handle
many more variables. Unlike Amelia I and other statistically
rigorous imputation software, it virtually never crashes (but
please let us know if you find to the contrary!). The program
also generalizes existing approaches by allowing for trends in
time series across observations within a cross-sectional unit,
as well as priors that allow experts to incorporate beliefs
they have about the values of missing cells in their data.
Amelia II also includes useful diagnostics of the fit of
multiple imputation models. The program works from the R
command line or via a graphical user interface that does not
require users to know R.
DESCRIPTION | 8
R/emb.r | 4
inst/doc/amelia.log | 4
inst/doc/amelia.pdf | 1744 +++++++++++++++++++++++++--------------------------
inst/doc/amelia.tex | 2
inst/doc/index.shtml | 2
6 files changed, 899 insertions(+), 865 deletions(-)
Author: T. Hastie, R. Tibshirani, Balasubramanian Narasimhan, Gil Chu
Title: Pam: prediction analysis for microarrays
Description: Some functions for sample classification in microarrays
Diff between pamr versions 1.31 dated 2007-10-02 and 1.33 dated 2009-04-15
pamr-1.31/pamr/old.inst |only pamr-1.33/pamr/DESCRIPTION | 12 +++++---- pamr-1.33/pamr/R/pamr.listgenes.R | 1 pamr-1.33/pamr/R/pamr.survfuns.R | 32 +++++++++++++------------- pamr-1.33/pamr/man/pamr.confusion.survival.Rd | 9 +++---- pamr-1.33/pamr/man/pamr.cv.Rd | 6 ++-- pamr-1.33/pamr/man/pamr.from.excel.Rd | 12 ++++----- pamr-1.33/pamr/man/pamr.knnimpute.Rd | 2 - pamr-1.33/pamr/man/pamr.listgenes.Rd | 1 pamr-1.33/pamr/man/pamr.makeclasses.Rd | 2 - pamr-1.33/pamr/man/pamr.plotcen.Rd | 2 - pamr-1.33/pamr/man/pamr.predict.Rd | 2 - pamr-1.33/pamr/man/pamr.predictmany.Rd | 2 - pamr-1.33/pamr/man/pamr.surv.to.class2.Rd | 2 - pamr-1.33/pamr/man/pamr.to.excel.Rd | 3 -- pamr-1.33/pamr/man/pamr.train.Rd | 9 +++---- 16 files changed, 49 insertions(+), 48 deletions(-)
Author: Robert B. Gramacy
Diff between monomvn versions 1.6-1 dated 2008-12-11 and 1.7 dated 2009-04-15
Title: Estimation for multivariate normal and Student-t data with
monotone missingness
Description: Estimation of multivariate normal and student-t data of
arbitrary dimension where the pattern of missing data is
monotone. Through the use of parsimonious/shrinkage regressions
(plsr, pcr, lasso, ridge, etc.), where standard regressions
fail, the package can handle a nearly arbitrary amount of
missing data. The current version supports maximum likelihood
inference and a full Bayesian approach employing scale-mixtures
for the lasso (double-exponential) prior and Student-t errors.
Monotone data augmentation extends this Bayesian approach to
arbitrary missingness patterns. A fully functional standalone
interface to the Bayesian lasso (from Park & Casella) and ridge
regression with model selection via Reversible Jump, and
student-t errors (from Geweke) is also provided
ChangeLog | 34 +
DESCRIPTION | 34 +
R/blasso.R | 56 ++-
R/blasso.s3.R | 37 +-
R/bmonomvn.R | 37 +-
R/bmonomvn.traces.R | 16
R/kl.norm.R | 6
R/monomvn.s3.R | 80 +++-
R/randmvn.R | 4
man/blasso.Rd | 50 ++
man/blasso.s3.Rd | 28 +
man/bmonomvn.Rd | 52 ++-
man/default.QP.Rd | 23 -
man/monomvn-package.Rd | 27 -
man/monomvn.s3.Rd | 2
man/plot.monomvn.Rd | 6
man/randmvn.Rd | 7
man/returns.Rd | 4
src/blasso.cc | 842 +++++++++++++++++++++++++++++++++----------------
src/blasso.h | 70 ++--
src/bmonomvn.cc | 188 ++++++++--
src/bmonomvn.h | 25 +
src/matrix.c | 22 -
src/matrix.h | 7
src/nu.c |only
src/nu.h |only
src/ustructs.cc | 100 +++++
src/ustructs.h | 3
28 files changed, 1265 insertions(+), 495 deletions(-)
Author: Thomas Hoffmann
Diff between fgui versions 0.3.2 dated 2009-03-11 and 0.3.3 dated 2009-04-15
Title: Function GUI
Description: Rapidly create a GUI interface for a function you created
by automatically creating widgets for arguments of the
function. Automatically parses help routines for
context-sensative help to these arguments. The interface
essentially a wrapper to some tcltk routines to both simplify
and facilitate GUI creation. More advanced tcltk routines/GUI
objects can be incorporated into the interface for greater
customization for the more experienced.
DESCRIPTION | 35 ++++++++++++++++++++++-------------
inst |only
2 files changed, 22 insertions(+), 13 deletions(-)
Author: Giovanni Petris
Diff between dlm versions 0.99-0 dated 2009-01-14 and 1.0-0 dated 2009-04-15
Title: Bayesian and Likelihood Analysis of Dynamic Linear Models
Description: Maximum likelihood, Kalman filtering and smoothing, and
Bayesian analysis of Normal linear State Space models, also
known as Dynamic Linear Models
DESCRIPTION | 14 ++--
R/DLM.R | 178 ++++++++++++++++++++++-------------------------------
inst/doc/dlm.pdf |binary
man/dlmFilter.Rd | 3
man/dlmForecast.Rd | 4 -
man/dlmGibbsDIG.Rd | 6 +
man/dlmLL.Rd | 3
man/dlmMLE.Rd | 4 +
man/dlmRandom.Rd | 4 -
man/dlmSmooth.Rd | 3
man/rwishart.Rd | 2
11 files changed, 107 insertions(+), 114 deletions(-)
Author: Yu-Sung Su
Diff between R2jags versions 0.01-21 dated 2009-03-11 and 0.01-22 dated 2009-04-15
Title: A Package for Running jags from R
Description: Using this package to call jags from R.
CHANGELOG | 5 +++++
DESCRIPTION | 8 ++++----
R/jags.R | 24 ++++++++++++++++++------
man/jags.Rd | 13 +++++++------
4 files changed, 34 insertions(+), 16 deletions(-)
Author: Hormuzd A. Katki
Diff between NestedCohort versions 1.0-1 dated 2007-09-26 and 1.1-1 dated 2009-04-15
Title: Survival Analysis for Cohorts with Missing Covariate Information
Description: Estimate hazard ratios, survival curves and attributable
risks for cohorts with missing covariates, using Cox models or
Kaplan-Meier estimated for strata. This handles studies nested
within cohorts, such as case-cohort studies with stratified
sampling. See
http://www.r-project.org/doc/Rnews/Rnews_2008-1.pdf
NestedCohort-1.0-1/NestedCohort/inst/doc/NestedCohort-PlotKM.eps |only
NestedCohort-1.0-1/NestedCohort/inst/doc/NestedCohort-PlotKM.pdf |only
NestedCohort-1.0-1/NestedCohort/inst/doc/NestedCohort-PlotStdSurv.eps |only
NestedCohort-1.0-1/NestedCohort/inst/doc/NestedCohort-PlotStdSurv.pdf |only
NestedCohort-1.0-1/NestedCohort/inst/doc/NestedCohort.aux |only
NestedCohort-1.0-1/NestedCohort/inst/doc/NestedCohort.log |only
NestedCohort-1.0-1/NestedCohort/inst/doc/NestedCohort.tex |only
NestedCohort-1.0-1/NestedCohort/inst/doc/NestedCohort.toc |only
NestedCohort-1.1-1/NestedCohort/CITATION | 65 ++++++----
NestedCohort-1.1-1/NestedCohort/DESCRIPTION | 29 ++--
NestedCohort-1.1-1/NestedCohort/R/nested.coxph.R | 2
NestedCohort-1.1-1/NestedCohort/R/nested.km.R | 8 -
NestedCohort-1.1-1/NestedCohort/R/nested.stdsurv.R | 2
NestedCohort-1.1-1/NestedCohort/inst/doc/NestedCohort.Rnw | 10 +
NestedCohort-1.1-1/NestedCohort/inst/doc/NestedCohort.pdf |binary
NestedCohort-1.1-1/NestedCohort/inst/doc/Rplots.pdf |only
NestedCohort-1.1-1/NestedCohort/inst/doc/S.sty |only
NestedCohort-1.1-1/NestedCohort/inst/doc/auto/NestedCohort.el | 15 +-
NestedCohort-1.1-1/NestedCohort/man/nested.coxph.Rd | 31 ++--
NestedCohort-1.1-1/NestedCohort/man/nested.km.Rd | 34 ++---
NestedCohort-1.1-1/NestedCohort/man/nested.stdsurv.Rd | 36 +++--
21 files changed, 140 insertions(+), 92 deletions(-)
Author: Jari Oksanen, Roeland Kindt, Pierre Legendre, Bob O'Hara, Gavin
L. Simpson, Peter Solymos, M. Henry H. Stevens, Helene Wagner
Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other functions
for community and vegetation ecologists.
Diff between vegan versions 1.15-1 dated 2008-12-19 and 1.15-2 dated 2009-04-15
DESCRIPTION | 20 R/adonis.R | 24 R/anova.ccabyaxis.R | 9 R/anova.ccabymargin.R | 2 R/beals.R | 76 +- R/betadisper.R | 49 + R/commsimulator.R | 3 R/contribdiv.R |only R/cophenetic.spantree.R | 2 R/decostand.R | 2 R/dispindmorisita.R |only R/kendall.global.R |only R/kendall.post.R |only R/metaMDS.R | 7 R/metaMDSdist.R | 20 R/mrpp.R | 34 R/nestednodf.R |only R/ordirgl.R | 4 R/ordisurf.R | 12 R/orditkplot.R | 10 R/plot.rad.R | 4 R/plot.spantree.R | 4 R/points.procrustes.R | 13 R/postMDS.R | 16 R/print.adonis.R | 2 R/print.mrpp.R | 9 R/print.nestednodf.R |only R/print.summary.cca.R | 6 R/rad.null.R | 6 R/spantree.R | 5 R/summary.cca.R | 8 data/mite.rda |binary inst/ChangeLog | 92 ++ inst/NEWS | 79 ++ inst/doc/FAQ-vegan.pdf |binary inst/doc/decision-vegan.pdf | 1624 +++++++++++++++++++++---------------------- inst/doc/decision-vegan.tex | 16 inst/doc/diversity-vegan.pdf |binary inst/doc/diversity-vegan.tex | 77 -- inst/doc/intro-vegan.pdf |binary inst/doc/intro-vegan.tex | 78 +- man/add1.cca.Rd | 20 man/adonis.Rd | 43 + man/anova.cca.Rd | 57 - man/beals.Rd | 78 +- man/betadisper.Rd | 14 man/cascadeKM.Rd | 8 man/cca.object.Rd | 5 man/contribdiv.Rd |only man/decorana.Rd | 2 man/decostand.Rd | 5 man/dispindmorisita.Rd |only man/envfit.Rd | 6 man/kendall.global.Rd |only man/metaMDS.Rd | 20 man/mrpp.Rd | 30 man/mso.Rd | 45 - man/nestedtemp.Rd | 45 + man/oecosimu.Rd | 3 man/ordisurf.Rd | 29 man/procrustes.Rd | 4 man/radfit.Rd | 10 man/spantree.Rd | 14 man/specpool.Rd | 2 man/vegdist.Rd | 6 65 files changed, 1646 insertions(+), 1113 deletions(-)
Author: Roger Bivand
Title: Interface between GRASS 6 geographical information system and R
Description: Interpreted interface between GRASS 6 geographical
information system and R, based on starting R from within the
GRASS environment.
Diff between spgrass6 versions 0.6-3 dated 2009-04-14 and 0.6-4 dated 2009-04-15
DESCRIPTION | 8 ++++---- R/vect_link.R | 2 +- man/readVECT6.Rd | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Author: Stefano Maria Iacus
Title: Simulation and Inference for Stochastic Differential Equations
Description: Companion package to the book `Simulation and Inference
for Stochastic Differential Equations With R Examples', ISBN
978-0-387-75838-1, Springer, NY.
Diff between sde versions 2.0.4 dated 2009-02-18 and 2.0.5 dated 2009-04-15
DESCRIPTION | 14 ++++++++------ R/cpoint.R | 9 +++++---- data/DWJ.rda |binary inst/doc/changes.txt | 4 ++++ 4 files changed, 17 insertions(+), 10 deletions(-)
Author: Hadley Wickham
Diff between plyr versions 0.1.5 dated 2009-02-24 and 0.1.6 dated 2009-04-15
Title: Tools for splitting, applying and combining data
Description: plyr is a set of tools that solves a common set of
problems: you need to break a big problem down into manageable
pieces, operate on each pieces and then put all the pieces back
together. For example, you might want to fit a model to each
spatial location or time point in your study, summarise data by
panels or collapse high-dimensional arrays to simpler summary
statistics.
plyr-0.1.5/plyr/R/indexed-list.r |only
plyr-0.1.5/plyr/R/simplify.r |only
plyr-0.1.5/plyr/inst/doc |only
plyr-0.1.5/plyr/man/indexed-list-55.rd |only
plyr-0.1.6/plyr/ANNOUNCE | 38 +++------
plyr-0.1.6/plyr/DESCRIPTION | 14 ++-
plyr-0.1.6/plyr/NEWS | 24 ++++++
plyr-0.1.6/plyr/R/helper-col-wise.r | 3
plyr-0.1.6/plyr/R/helper-each.r | 44 +++++++++--
plyr-0.1.6/plyr/R/helper-splat.r | 1
plyr-0.1.6/plyr/R/helper-try.r | 11 ++
plyr-0.1.6/plyr/R/indexed-array.r |only
plyr-0.1.6/plyr/R/indexed-data-frame.r |only
plyr-0.1.6/plyr/R/indexed.r |only
plyr-0.1.6/plyr/R/ninteraction.r | 2
plyr-0.1.6/plyr/R/ply-array.r | 8 --
plyr-0.1.6/plyr/R/ply-data-frame.r | 6 +
plyr-0.1.6/plyr/R/ply-list.r | 43 +++++++---
plyr-0.1.6/plyr/R/ply-mapply.r | 1
plyr-0.1.6/plyr/R/ply-null.r | 2
plyr-0.1.6/plyr/R/progress.r | 5 -
plyr-0.1.6/plyr/R/rbind.r | 64 ++++++++++++++--
plyr-0.1.6/plyr/R/simplify-array.r |only
plyr-0.1.6/plyr/R/simplify-data-frame.r |only
plyr-0.1.6/plyr/R/simplify-vector.r |only
plyr-0.1.6/plyr/R/split-array.r |only
plyr-0.1.6/plyr/R/split-data-frame.r |only
plyr-0.1.6/plyr/R/split.r | 102 --------------------------
plyr-0.1.6/plyr/R/utils.r | 2
plyr-0.1.6/plyr/load.r | 11 --
plyr-0.1.6/plyr/man/aaply-ym.rd | 11 --
plyr-0.1.6/plyr/man/adply-du.rd | 3
plyr-0.1.6/plyr/man/alply-wh.rd | 10 --
plyr-0.1.6/plyr/man/as-df-d2.rd |only
plyr-0.1.6/plyr/man/create-progress-bar-4d.rd | 2
plyr-0.1.6/plyr/man/daply-7r.rd | 12 ---
plyr-0.1.6/plyr/man/data-baseball.rd | 3
plyr-0.1.6/plyr/man/ddply-5k.rd | 6 +
plyr-0.1.6/plyr/man/dlply-7t.rd | 5 -
plyr-0.1.6/plyr/man/each-4v.rd | 3
plyr-0.1.6/plyr/man/failwith-sc.rd | 10 ++
plyr-0.1.6/plyr/man/get--split-0n.rd | 2
plyr-0.1.6/plyr/man/indexed-array-4w.rd |only
plyr-0.1.6/plyr/man/indexed-df-uf.rd |only
plyr-0.1.6/plyr/man/laply-10.rd | 10 --
plyr-0.1.6/plyr/man/list-to-array-ki.rd | 2
plyr-0.1.6/plyr/man/list-to-dataframe-zb.rd | 2
plyr-0.1.6/plyr/man/list-to-vector-27.rd |only
plyr-0.1.6/plyr/man/llply-12.rd | 12 ---
plyr-0.1.6/plyr/man/m-ply-5z.rd | 3
plyr-0.1.6/plyr/man/ninteraction-vw.rd | 2
plyr-0.1.6/plyr/man/print-split-fc.rd | 2
plyr-0.1.6/plyr/man/progress-none-u0.rd | 2
plyr-0.1.6/plyr/man/rbind-fill-di.rd | 8 +-
plyr-0.1.6/plyr/man/splat-n6.rd | 5 +
plyr-0.1.6/plyr/man/split-labels-0o.rd |only
plyr-0.1.6/plyr/man/splitter-a-cs.rd | 6 +
plyr-0.1.6/plyr/man/splitter-d-cs.rd | 15 +++
plyr-0.1.6/plyr/man/unrowname-ef.rd | 2
59 files changed, 265 insertions(+), 254 deletions(-)
Author: Thomas A. Gerds
Title: Prediction Error Curves for Survival Models
Description: Validation of predicted surival probabilities using
inverse weighting and resampling.
Diff between pec versions 1.0.7 dated 2008-07-28 and 1.1.0 dated 2009-04-15
DESCRIPTION | 9 +++++--- NAMESPACE | 4 ++- R/cindex.R |only R/crps.R | 2 - R/pecMethods.R | 51 +++++++++++++++----------------------------------- R/plot.pec.R | 9 +++----- R/predictSurvOrder.R |only R/predictSurvProb.R | 24 ++++++++--------------- R/print.Cindex.R |only R/resolveReplan.R | 11 +--------- R/survest.aalen.R |only R/survest.cox.aalen.R |only dev |only exa/Pec-Examples.R | 1 man/ipcw.Rd | 17 +++++++--------- man/pec.Rd | 43 ++++++++++++++++++------------------------ man/plot.pec.Rd | 5 ---- src/cindex.c | 8 +++---- 18 files changed, 72 insertions(+), 112 deletions(-)
Author: Ole F. Christensen
Diff between geoRglm versions 0.8-24 dated 2008-04-29 and 0.8-25 dated 2009-04-15
Title: geoRglm - a package for generalised linear spatial models
Description: Functions for inference in generalised linear spatial
models. The posterior and predictive inference is based on
Markov chain Monte Carlo methods. Package geoRglm is an
extension to the package geoR, which must be installed first.
DESCRIPTION | 18 ++++++++++++------
R/pois.bayes.R | 2 +-
inst/doc/geoRglmintro.pdf |binary
man/asympvar.Rd | 2 +-
man/b50.Rd | 2 +-
man/binom.krige.Rd | 2 +-
man/binom.krige.bayes.Rd | 2 +-
man/covariog.Rd | 2 +-
man/covariog.model.env.Rd | 2 +-
man/create.mcmc.coda.Rd | 2 +-
man/glsm.krige.Rd | 2 +-
man/glsm.mcmc.Rd | 2 +-
man/likfit.glsm.Rd | 2 +-
man/lines.covariomodel.Rd | 2 +-
man/pois.krige.Rd | 2 +-
man/pois.krige.bayes.Rd | 2 +-
man/proflik.glsm.Rd | 2 +-
man/rongelap.Rd | 6 +++---
18 files changed, 30 insertions(+), 24 deletions(-)
Author: Karsten Tabelow
Diff between dti versions 0.6-0 dated 2008-12-04 and 0.8-0 dated 2009-04-15
Title: DTI/DWI Analysis
Description: Diffusion Weighted Imaging is a Magnetic Resonance Imaging
modality, that measures diffusion of water in tissues like the
human brain. The package contains R-functions to process
diffusion-weighted data in the context of the diffusion tensor
model (DTI). This includes the calculation of anisotropy
measures and, most important, the implementation of our
structural adaptive smoothing algorithm as described in K.
Tabelow, J. Polzehl, V. Spokoiny, and H.U. Voss, Diffusion
Tensor Imaging: Structural Adaptive Smoothing, Neuroimage
39(4), 1763-1773 (2008).
DESCRIPTION | 38 +--
HISTORY | 6
NAMESPACE | 4
R/Classes.r | 65 ++++-
R/aws.r | 9
R/aws2.r | 33 ++
R/dti.r | 544 +++++++++++++++++++++++++++++++++++++++----
R/misc.r | 88 ++++++
R/show3d.r |only
R/unix |only
R/windows |only
data |only
demo/dti_art.r | 23 +
inst/rcode/createpolyeders.r |only
inst/rcode/generatedata2.r |only
man/dti-class.Rd | 33 ++
man/dti.smooth-methods.Rd | 7
man/dwiQball-methods.Rd |only
man/extract-methods.Rd | 13 -
man/plot-methods.Rd | 8
man/polyeder.Rd |only
man/print-methods.Rd | 10
man/show3d-methods.Rd | 46 ++-
man/summary-methods.Rd | 10
src/aniso.f | 2
src/dtifull.f | 5
src/dtinraw2.f | 10
src/show3d.f |only
28 files changed, 832 insertions(+), 122 deletions(-)
Author: Matthias Kohl, Peter Ruckdeschel
Title: Extensions of package distr
Description: Extensions of package distr and some additional
functionality
Diff between distrEx versions 2.0.5 dated 2009-02-20 and 2.1 dated 2009-04-15
distrEx-2.0.5/distrEx/R/Expectation_LebDec.R |only distrEx-2.1/distrEx/DESCRIPTION | 33 distrEx-2.1/distrEx/NAMESPACE | 16 distrEx-2.1/distrEx/R/AllClass.R | 103 ++ distrEx-2.1/distrEx/R/AllGeneric.R | 13 distrEx-2.1/distrEx/R/AllInitialize.R | 101 ++ distrEx-2.1/distrEx/R/AsymTotalVarDist.R |only distrEx-2.1/distrEx/R/ClippedMoments.R | 301 ++++++- distrEx-2.1/distrEx/R/ConvexContamination.R | 18 distrEx-2.1/distrEx/R/DiscreteMVDistribution.R | 2 distrEx-2.1/distrEx/R/Expectation.R | 530 ++++++++++++-- distrEx-2.1/distrEx/R/Functionals.R | 244 +++++- distrEx-2.1/distrEx/R/Gumbel.R | 9 distrEx-2.1/distrEx/R/HellingerDist.R | 58 + distrEx-2.1/distrEx/R/Internalfunctions.R | 8 distrEx-2.1/distrEx/R/KolmogorovDist.R | 20 distrEx-2.1/distrEx/R/Kurtosis.R | 235 ++++-- distrEx-2.1/distrEx/R/LMCondDistribution.R | 6 distrEx-2.1/distrEx/R/OAsymTotalVarDist.R |only distrEx-2.1/distrEx/R/Pareto.R |only distrEx-2.1/distrEx/R/PrognCondDistribution.R | 52 - distrEx-2.1/distrEx/R/Skewness.R | 220 ++++- distrEx-2.1/distrEx/R/TotalVarDist.R | 83 +- distrEx-2.1/distrEx/R/distrExOptions.R | 3 distrEx-2.1/distrEx/demo/Prognose.R | 1 distrEx-2.1/distrEx/inst/NEWS | 44 + distrEx-2.1/distrEx/man/0distrEx-package.Rd | 13 distrEx-2.1/distrEx/man/AbscontCondDistribution-class.Rd | 4 distrEx-2.1/distrEx/man/AsymTotalVarDist.Rd |only distrEx-2.1/distrEx/man/DiscreteCondDistribution-class.Rd | 4 distrEx-2.1/distrEx/man/DiscreteMVDistribution-class.Rd | 6 distrEx-2.1/distrEx/man/E.Rd | 226 ++++- distrEx-2.1/distrEx/man/Gumbel-class.Rd | 25 distrEx-2.1/distrEx/man/HellingerDist.Rd | 44 - distrEx-2.1/distrEx/man/OAsymTotalVarDist.Rd |only distrEx-2.1/distrEx/man/Pareto-class.Rd |only distrEx-2.1/distrEx/man/Pareto.Rd |only distrEx-2.1/distrEx/man/ParetoParameter-class.Rd |only distrEx-2.1/distrEx/man/PrognCondDistribution-class.Rd | 23 distrEx-2.1/distrEx/man/PrognCondDistribution.Rd |only distrEx-2.1/distrEx/man/TotalVarDist.Rd | 43 - distrEx-2.1/distrEx/man/Var.Rd | 102 ++ distrEx-2.1/distrEx/man/distrExConstants.Rd |only distrEx-2.1/distrEx/man/distrExOptions.Rd | 33 distrEx-2.1/distrEx/man/internals.Rd |only distrEx-2.1/distrEx/man/m1df.Rd | 37 distrEx-2.1/distrEx/man/m2df.Rd | 40 - 47 files changed, 2119 insertions(+), 581 deletions(-)
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Documentation for packages distr, distrEx, distrSim, distrTEst
Description: provides documentation in form of a common vignette to
packages distr, distrEx, distrMod, distrSim, distrTEst
Diff between distrDoc versions 2.0.3 dated 2008-11-30 and 2.1 dated 2009-04-15
DESCRIPTION | 38 inst/NEWS | 12 inst/doc/Rplots.pdf |only inst/doc/distr.R |only inst/doc/distr.Rnw | 835 inst/doc/distr.pdf |90414 +++++++++++++++++++++++++++-------------------- inst/doc/svn-multi.sty |only inst/doc/svnkw.sty |only man/0distrDoc-package.Rd | 4 9 files changed, 54032 insertions(+), 37271 deletions(-)
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Object orientated implementation of distributions
Description: Object orientated implementation of distributions
Diff between distr versions 2.0.6 dated 2009-02-20 and 2.1 dated 2009-04-15
DESCRIPTION | 35 NAMESPACE | 8 R/0distrOptions.R | 4 R/AllClasses.R | 462 ++-- R/AllGenerics.R | 24 R/AllInitialize.R | 49 R/CompoundDistribution.R |only R/ContDistribution.R | 70 R/Convpow.r | 74 R/DiscreteDistribution.R | 112 - R/Distribution.R | 26 R/ExtraConvolutionMethods.R | 2 R/LatticeDistribution.R | 67 R/MinMaximum.R | 2 R/SimplifyD.R | 2 R/Truncate.R | 125 + R/UnivarLebDecDistribution.R | 145 + R/UnivarMixingDistribution.R | 52 R/UtilitiesDistributions.R | 9 R/bAcDcLcDistribution.R | 264 +- R/bAffLinUnivarLebDecDistribution.R | 24 R/flat.R | 2 R/getLow.R | 119 + R/internalUtils.R | 192 + R/internalUtils_LCD.R | 60 R/internalUtils_trunc.R |only R/makeAbscontDistribution.R |only R/plot-methods.R | 243 +- R/plot-methods_LebDec.R | 349 ++- R/print-show-methods.R | 17 R/setIsRelations.R | 3 R/versionManagement.R | 10 demo/ConvolutionNormalDistr.R | 2 inst/NEWS | 176 + inst/doc/Rplots.pdf | 3568 +++++++++++++++++----------------- inst/doc/newDistributions.Rnw | 53 inst/doc/newDistributions.pdf |binary inst/doc/svn-multi.sty |only inst/doc/svnkw.sty |only man/0distr-package.Rd | 20 man/Arcsine-class.Rd | 6 man/Beta-class.Rd | 6 man/Binom-class.Rd | 6 man/Cauchy-class.Rd | 6 man/Chisq-class.Rd | 6 man/CompoundDistribution-class.Rd |only man/CompoundDistribution.Rd |only man/ContDistribution-class.Rd | 12 man/ContDistribution.Rd | 14 man/ConvPow.Rd | 14 man/DExp-class.Rd | 6 man/Dirac-class.Rd | 6 man/DiscreteDistribution-class.Rd | 32 man/DiscreteDistribution.Rd | 45 man/Distribution-class.Rd | 50 man/Fd-class.Rd | 6 man/Gammad-class.Rd | 6 man/Geom-class.Rd | 6 man/Huberize-methods.Rd | 4 man/Hyper-class.Rd | 6 man/Integer-class.Rd | 6 man/LatticeDistribution-class.Rd | 19 man/Lnorm-class.Rd | 6 man/Logis-class.Rd | 6 man/MakeAbscontDistribution.Rd |only man/Math-methods.Rd | 11 man/Nbinom-class.Rd | 6 man/Norm-class.Rd | 6 man/Pois-class.Rd | 6 man/Td-class.Rd | 6 man/Truncate-methods.Rd | 35 man/UnivarLebDecDistribution-class.Rd | 52 man/UnivarMixingDistribution-class.Rd | 11 man/UnivariateDistribution-class.Rd | 6 man/Weibull-class.Rd | 6 man/distroptions.Rd | 9 man/gap-methods.Rd | 7 man/getLow.Rd | 29 man/internals.Rd | 73 man/operators-methods.Rd | 17 man/p.l-methods.Rd | 16 man/plot-methods.Rd | 67 man/prob-methods.Rd | 40 man/q.r-methods.Rd | 16 man/showobj-methods.Rd | 2 85 files changed, 4400 insertions(+), 2665 deletions(-)
Author: Joerg Polzehl
Diff between aws versions 1.3-3.1 dated 2007-07-07 and 1.6 dated 2009-04-15
Title: Adaptive Weights Smoothing
Description: The package contains R-functions implementing the
Propagation-Separation Approach to adaptive smoothing as
described in J. Polzehl and V. Spokoiny (2006),
Propagation-Separation Approach for Local Likelihood
Estimation, Prob. Theory and Rel. Fields, 135(3):335--362. and
J. Polzehl and V. Spokoiny (2004) Spatially adaptive regression
estimation: Propagation-separation approach, WIAS-Preprint 998.
aws-1.3-3.1/aws/R/awstindex.r |only
aws-1.3-3.1/aws/R/eaws.r |only
aws-1.3-3.1/aws/R/haws.r |only
aws-1.3-3.1/aws/R/laws.r |only
aws-1.3-3.1/aws/man/awsbi.Rd |only
aws-1.3-3.1/aws/man/awsdens.Rd |only
aws-1.3-3.1/aws/man/awsh.Rd |only
aws-1.3-3.1/aws/man/awstindex.Rd |only
aws-1.3-3.1/aws/man/awstri.Rd |only
aws-1.3-3.1/aws/man/awsuni.Rd |only
aws-1.3-3.1/aws/man/getnubi.Rd |only
aws-1.3-3.1/aws/man/getnutri.Rd |only
aws-1.3-3.1/aws/man/laws.Rd |only
aws-1.3-3.1/aws/src/aws.f |only
aws-1.3-3.1/aws/src/dgemm.f |only
aws-1.3-3.1/aws/src/eaws.f |only
aws-1.3-3.1/aws/src/hawsuni.f |only
aws-1.3-3.1/aws/src/laws.f |only
aws-1.6/aws/COPYRIGHT | 2
aws-1.6/aws/DESCRIPTION | 36 -
aws-1.6/aws/INDEX | 21
aws-1.6/aws/NAMESPACE |only
aws-1.6/aws/R/Classes.r |only
aws-1.6/aws/R/aws.r | 1059 ++++++++++++++++++++-------------------
aws-1.6/aws/R/awsgaussian.r |only
aws-1.6/aws/R/awsirregular.r |only
aws-1.6/aws/R/lpaws.r |only
aws-1.6/aws/R/misc.r |only
aws-1.6/aws/README | 117 ----
aws-1.6/aws/demo |only
aws-1.6/aws/man/aws.Rd | 456 ++++------------
aws-1.6/aws/man/aws.gaussian.Rd |only
aws-1.6/aws/man/aws.irreg.Rd |only
aws-1.6/aws/man/awsdata.Rd |only
aws-1.6/aws/man/binning.Rd |only
aws-1.6/aws/man/lpaws.Rd |only
aws-1.6/aws/scripts |only
aws-1.6/aws/src/Makevars |only
aws-1.6/aws/src/Rentries.c |only
aws-1.6/aws/src/awslp.f |only
aws-1.6/aws/src/caws.f |only
aws-1.6/aws/src/cawsmask.f |only
aws-1.6/aws/src/misc.f |only
43 files changed, 728 insertions(+), 963 deletions(-)
Author: Peter Ruckdeschel
Title: Utilities for Sweave together with TeX listings package
Description: provides utilities for defining R / Rd as
Tex-package-listings "language" and including R / Rd source
file (sniplets) copied from R-forge in its most recent version
(or another url) thereby avoiding inconsistencies between
vignette and documented source code
Diff between SweaveListingUtils versions 0.1.1 dated 2008-11-30 and 0.2 dated 2009-04-15
DESCRIPTION | 37 ++-- R/SweaveListingUtils.R | 10 - inst/NEWS | 24 +++ inst/doc/ExampleSweaveListingUtils.Rnw | 250 +++++++++++++++++++++++++++++++-- inst/doc/ExampleSweaveListingUtils.pdf |binary inst/doc/altPrep.tex |only inst/doc/locChange.tex |only inst/doc/preambleExp.tex | 152 -------------------- inst/doc/svn-multi.sty |only inst/doc/svnkw.sty |only man/0SweaveListingUtils-package.Rd | 3 11 files changed, 293 insertions(+), 183 deletions(-)
More information about SweaveListingUtils at CRAN
Permanent link
Author: Thomas Lumley
Title: analysis of complex survey samples
Description: Summary statistics, generalised linear models, Cox models,
loglinear models, and general maximum pseudolikelihood
estimation for multistage stratified, cluster-sampled,
unequally weighted survey samples. Variances by Taylor series
linearisation or replicate weights. Post-stratification,
calibration, and raking. Two-phase designs. Graphics.
Diff between survey versions 3.13 dated 2009-03-27 and 3.14 dated 2009-04-15
DESCRIPTION | 6 - INDEX | 10 -- NAMESPACE | 1 R/margins.R |only R/survey.R | 1 R/svykm.R | 189 ++++++++++++++++++++++++++++++++++++++++++---- TODO | 2 inst/CITATION | 4 inst/NEWS | 11 ++ inst/doc/domain.pdf |binary inst/doc/epi.pdf |binary inst/doc/phase1.pdf |binary inst/doc/survey.pdf |binary inst/porting.to.S | 4 man/calibrate.Rd | 14 +-- man/surveysummary.Rd | 32 ++++--- man/svycoxph.Rd | 59 ++++++++++++-- man/svydesign.Rd | 1 man/svyglm.Rd | 1 man/svykm.Rd | 47 +++++++++-- man/svyquantile.Rd | 10 +- tests/README | 4 tests/survcurve.R |only tests/survcurve.Rout.save |only 24 files changed, 327 insertions(+), 69 deletions(-)
Author: Peter Ruckdeschel
Title: Utilities for start-up messages
Description: Utilities for start-up messages
Diff between startupmsg versions 0.5.3 dated 2008-11-30 and 0.6 dated 2009-04-15
DESCRIPTION | 27 ++++++++++++++++----------- inst/NEWS | 9 +++++++++ 2 files changed, 25 insertions(+), 11 deletions(-)
Author: Reinhard Furrer
Title: SPArse Matrix
Description: Set of function for sparse matrix algebra. Differences
with SparseM/Matrix are: (1) we only support (essentially) one
sparse matrix format, (2) based on transparent and simple
structure(s), (3) tailored for MCMC calculations within GMRF.
(4) S3 and S4 like-"compatible" ... and it is fast.
Diff between spam versions 0.15-3 dated 2009-02-21 and 0.15-4 dated 2009-04-15
DESCRIPTION | 27 ++++++++++++++------------- R/definitions.R | 10 +++++----- R/dist.R | 3 ++- R/foreign.R | 5 +++-- R/kronecker.R | 6 +++--- R/plotting.R | 3 ++- R/profile.R | 20 +++++++++++++++++++- R/spam_solve.R | 12 ++++++------ R/xybind.R | 11 ++++++----- demo/article-jss.R | 3 ++- demo/cholesky.R | 3 ++- demo/spam.R | 3 ++- demo/timing.R | 3 ++- inst/NEWS | 10 ++++++++++ man/SPAM.Rd | 12 ++++++++++-- man/UScounties.Rd | 3 ++- man/USprecip.Rd | 3 ++- man/allequal.Rd | 3 ++- man/chol.Rd | 3 ++- man/det.Rd | 3 ++- man/diag.Rd | 3 ++- man/dim.Rd | 3 ++- man/display.Rd | 3 ++- man/foreign.Rd | 3 ++- man/history.spam.Rd | 3 ++- man/image.Rd | 3 ++- man/import.Rd | 3 ++- man/isSymmetric.Rd | 3 ++- man/kronecker.Rd | 3 ++- man/lu.tri.Rd | 3 ++- man/math.Rd | 3 ++- man/math2.Rd | 5 +++-- man/nearestdist.Rd | 3 ++- man/operations.Rd | 3 ++- man/options.Rd | 13 +++++++++---- man/ordering.Rd | 3 ++- man/powerboost.Rd |only man/print.Rd | 3 ++- man/solve.Rd | 3 ++- man/spam-class.Rd | 6 +++--- man/spam.chol.NgPeyton-class.Rd | 3 ++- man/spam.creation.Rd | 3 ++- man/spam.internal.Rd | 3 ++- man/summary.Rd |only man/todo.Rd | 3 ++- man/triplet.Rd | 3 ++- man/version.Rd | 3 ++- man/xybind.Rd | 12 +++++------- tests/demo_article-jss.R | 3 ++- tests/demo_article-jss.Rout.save | 9 +++++---- tests/demo_cholesky.R | 3 ++- tests/demo_cholesky.Rout.save | 9 +++++---- tests/demo_spam.R | 3 ++- tests/demo_spam.Rout.save | 9 +++++---- tests/demo_timing.R | 3 ++- tests/demo_timing.Rout.save | 9 +++++---- tests/displays.R | 3 ++- tests/displays.Rout.save | 9 +++++---- tests/dist.R | 3 ++- tests/dist.Rout.save | 9 +++++---- tests/foreign.R | 3 ++- tests/foreign.Rout.save | 7 ++++--- tests/kronecker.R | 3 ++- tests/kronecker.Rout.save | 9 +++++---- tests/overall.R | 3 ++- tests/overall.Rout.save | 9 +++++---- tests/solve.R | 3 ++- tests/solve.Rout.save | 9 +++++---- tests/xybind.R | 3 ++- tests/xybind.Rout.save | 9 +++++---- 70 files changed, 238 insertions(+), 140 deletions(-)
Author: Manuel Morales
Diff between sciplot versions 1.0-4 dated 2009-02-17 and 1.0-5 dated 2009-04-15
Title: Scientific Graphing Functions for Factorial Designs
Description: A collection of functions that creates graphs with error
bars for data collected from one-way or higher factorial
designs.
CHANGELOG | 1 +
DESCRIPTION | 14 ++++++++------
R/bargraphCI.R | 10 +++++++---
R/bargraphCI2.R |only
4 files changed, 16 insertions(+), 9 deletions(-)
Author: Thomas Baier
Title: statconn: provides portable C-style interface to R
(StatConnector)
Description: rscproxy library provides an interface to R used by third
party applications, most notable, but not limited to,
statconnDCOM, ROOo and other systems.
Diff between rscproxy versions 1.2-0 dated 2009-03-20 and 1.3-1 dated 2009-04-15
DESCRIPTION | 8 +++---- src/rproxy.c | 41 +++++++++++++++++++++++++++++++++----- src/rproxy_impl.c | 57 +++++++++++++++++++++++++++++++++++++----------------- 3 files changed, 79 insertions(+), 27 deletions(-)
Author: Jens Oehlschlägel
Diff between rindex versions 0.08 dated 2008-08-01 and 0.09 dated 2009-04-15
Title: Indexing for R
Description: Index structures allow quickly accessing elements from
large collections. While btree are optimized for disk databases
and ttree for ram databases we use hybrid static indexing which
is quite optimal for R.
DESCRIPTION | 30 +++++++++++++++++-------------
R/index.R | 2 +-
man/index.rd | 2 +-
3 files changed, 19 insertions(+), 15 deletions(-)
Author: Jens Oehlschlägel
Diff between ref versions 0.95 dated 2007-10-22 and 0.96 dated 2009-04-15
Title: References for R
Description: small package with functions for creating references,
reading from and writing ro references and a memory efficient
refdata type that transparently encapsulates matrixes and
data.frames
DESCRIPTION | 29 +++++++++++++++++------------
R/refdata.R | 2 +-
man/optimal.index.rd | 2 +-
3 files changed, 19 insertions(+), 14 deletions(-)
Author: Andrew Gelman
Diff between mi versions 0.04-6 dated 2009-04-01 and 0.05-1 dated 2009-04-15
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
mi-0.04-6/mi/man/glm.mi.Rd |only
mi-0.04-6/mi/man/lm.mi.Rd |only
mi-0.04-6/mi/man/lmer.mi.Rd |only
mi-0.05-1/mi/CHANGELOG | 61 +++++++---
mi-0.05-1/mi/DESCRIPTION | 11 -
mi-0.05-1/mi/NAMESPACE | 10 +
mi-0.05-1/mi/R/AllClass.R | 33 +----
mi-0.05-1/mi/R/AllInternal.R | 66 ++++++++++-
mi-0.05-1/mi/R/bayesglm.mi.R | 20 ---
mi-0.05-1/mi/R/bayespolr.mi.R |only
mi-0.05-1/mi/R/coef.R | 30 -----
mi-0.05-1/mi/R/display.R | 41 ------
mi-0.05-1/mi/R/glm.mi.R | 17 --
mi-0.05-1/mi/R/imputation.models.R | 20 +--
mi-0.05-1/mi/R/lm.mi.R | 19 +--
mi-0.05-1/mi/R/lmer.mi.R | 48 ++------
mi-0.05-1/mi/R/mi.R | 95 +++++++--------
mi-0.05-1/mi/R/mi.completed.R | 15 ++
mi-0.05-1/mi/R/mi.info.R | 54 ++++-----
mi-0.05-1/mi/R/mi.pooled.R |only
mi-0.05-1/mi/R/mi.preprocess.R | 220 +++++++++++--------------------------
mi-0.05-1/mi/R/plot.R | 2
mi-0.05-1/mi/R/polr.mi.R |only
mi-0.05-1/mi/R/print.R | 11 -
mi-0.05-1/mi/R/se.coef.R | 14 --
mi-0.05-1/mi/TODO | 13 ++
mi-0.05-1/mi/man/mi.Rd | 17 +-
mi-0.05-1/mi/man/mi.completed.Rd | 8 -
mi-0.05-1/mi/man/mi.info.Rd | 4
mi-0.05-1/mi/man/mi.pooled.Rd |only
mi-0.05-1/mi/man/mi.preprocess.Rd | 8 -
mi-0.05-1/mi/man/type.models.Rd | 1
mi-0.05-1/mi/man/typecast.Rd | 1
33 files changed, 359 insertions(+), 480 deletions(-)
Author: Guido Schwarzer
Diff between meta versions 0.9-18 dated 2009-03-03 and 0.9-19 dated 2009-04-15
Title: Meta-Analysis
Description: Fixed and random effects meta-analysis. Functions for
tests of bias, forest and funnel plot.
DESCRIPTION | 11 +++++++----
R/metabin.R | 10 +++++++++-
R/metacont.R | 11 +++++++++++
R/metagen.R | 7 +++++++
R/metaprop.R | 7 +++++++
5 files changed, 41 insertions(+), 5 deletions(-)
Author: Karline Soetaert
Diff between limSolve versions 1.3 dated 2008-10-29 and 1.4 dated 2009-04-15
Title: Solving linear inverse models
Description: Functions that (1.) Find the minimum/maximum of a linear
or quadratic function: min or max (f(x)), where f(x) =
||Ax-b||^2 or f(x) = sum(ai*xi) subject to equality constraints
Ex=f and/or inequality constraints Gx>=h. (2.) Sample an
underdetermined- or overdetermined system Ex=f subject to
Gx>=h, and if applicable Ax~=b. (3.) Solve a linear system Ax=B
for the unknown x. Includes banded and tridiagonal linear
systems. The package calls Fortran functions from LINPACK
limSolve-1.3/limSolve/R/inverse.R |only
limSolve-1.4/limSolve/DESCRIPTION | 41
limSolve-1.4/limSolve/NAMESPACE | 4
limSolve-1.4/limSolve/R/Solve.R |only
limSolve-1.4/limSolve/R/Solve.banded.R |only
limSolve-1.4/limSolve/R/Solve.block.R |only
limSolve-1.4/limSolve/R/Solve.tridiag.R |only
limSolve-1.4/limSolve/R/ldei.R |only
limSolve-1.4/limSolve/R/ldp.R |only
limSolve-1.4/limSolve/R/linp.R |only
limSolve-1.4/limSolve/R/lsei.R |only
limSolve-1.4/limSolve/R/nnls.R |only
limSolve-1.4/limSolve/R/resolution.R |only
limSolve-1.4/limSolve/R/varranges.R |only
limSolve-1.4/limSolve/R/varsample.R |only
limSolve-1.4/limSolve/R/xranges.R |only
limSolve-1.4/limSolve/R/xsample.R |only
limSolve-1.4/limSolve/inst/doc/limSolve.pdf |84646 ++++++++++++++--------------
limSolve-1.4/limSolve/inst/doc/limSolve.rnw | 866
limSolve-1.4/limSolve/inst/doc/xsample.pdf |binary
limSolve-1.4/limSolve/inst/doc/xsample.rnw | 368
limSolve-1.4/limSolve/man/Blending.Rd | 128
limSolve-1.4/limSolve/man/Chemtax.Rd | 191
limSolve-1.4/limSolve/man/E_coli.Rd | 119
limSolve-1.4/limSolve/man/Minkdiet.Rd | 139
limSolve-1.4/limSolve/man/RigaWeb.rd | 88
limSolve-1.4/limSolve/man/Solve.Rd | 54
limSolve-1.4/limSolve/man/Solve.banded.Rd | 91
limSolve-1.4/limSolve/man/Solve.block.Rd |only
limSolve-1.4/limSolve/man/Solve.tridiag.Rd | 71
limSolve-1.4/limSolve/man/ldei.Rd | 109
limSolve-1.4/limSolve/man/ldp.Rd | 79
limSolve-1.4/limSolve/man/limSolve.rd | 54
limSolve-1.4/limSolve/man/linp.Rd | 126
limSolve-1.4/limSolve/man/lsei.Rd | 177
limSolve-1.4/limSolve/man/nnls.Rd | 86
limSolve-1.4/limSolve/man/resolution.Rd | 64
limSolve-1.4/limSolve/man/varranges.Rd | 76
limSolve-1.4/limSolve/man/varsample.Rd | 46
limSolve-1.4/limSolve/man/xranges.Rd | 105
limSolve-1.4/limSolve/man/xsample.Rd | 254
limSolve-1.4/limSolve/src/Makevars |only
limSolve-1.4/limSolve/src/colrow.f |only
limSolve-1.4/limSolve/src/inverse.f | 1050
limSolve-1.4/limSolve/src/solve.f |only
45 files changed, 44609 insertions(+), 44423 deletions(-)
Author: Robin K.S. Hankin
Title: A generalization of the Dirichlet distribution
Description: A suite of routines for the hyperdirichlet distribution
Diff between hyperdirichlet versions 1.1-7 dated 2009-01-20 and 1.1-8 dated 2009-04-15
hyperdirichlet-1.1-7/hyperdirichlet/inst/doc/jss.bst |only hyperdirichlet-1.1-7/hyperdirichlet/inst/doc/jss.cls |only hyperdirichlet-1.1-8/hyperdirichlet/DESCRIPTION | 8 hyperdirichlet-1.1-8/hyperdirichlet/inst/doc/correspondence.Rnw |only hyperdirichlet-1.1-8/hyperdirichlet/inst/doc/correspondence.pdf |only hyperdirichlet-1.1-8/hyperdirichlet/inst/doc/hyperdirichlet.bib | 62 hyperdirichlet-1.1-8/hyperdirichlet/inst/doc/hyperdirichlet.pdf | 3540 +++++----- hyperdirichlet-1.1-8/hyperdirichlet/inst/doc/precalc.Rdata |only hyperdirichlet-1.1-8/hyperdirichlet/man/hyperdirichlet-package.Rd | 4 9 files changed, 1853 insertions(+), 1761 deletions(-)
More information about hyperdirichlet at CRAN
Permanent link
Author: Rob J Hyndman
Diff between forecasting versions 1.23 dated 2009-02-22 and 1.24 dated 2009-04-15
Bundle: forecasting
Contains: forecast fma Mcomp expsmooth
DESCRIPTION | 28 +++++++++++++++-------------
forecast/R/DM.R | 4 ++--
forecast/R/forecast2.R | 4 ++--
forecast/R/newarima2.R | 22 +++++++++++++++++++++-
forecast/man/forecast.HoltWinters.Rd | 2 +-
5 files changed, 41 insertions(+), 19 deletions(-)
Author: Tomas Aragon
Diff between epitools versions 0.5-2 dated 2008-11-02 and 0.5-3 dated 2009-04-15
Title: Epidemiology Tools
Description: EpiTools: R Package for Epidemiologic Data and Graphics
DESCRIPTION | 24 ++++-----
NAMESPACE |only
man/ageadjust.direct.Rd | 2
man/ageadjust.indirect.Rd | 2
man/as.hour.Rd | 2
man/as.month.Rd | 2
man/as.week.Rd | 2
man/binom.conf.int.Rd | 2
man/colorbrewer.Rd | 2
man/colors.plot.Rd | 2
man/epicurve.Rd | 2
man/epidate.Rd | 2
man/epitab.Rd | 2
man/epitable.Rd | 2
man/expand.table.Rd | 2
man/expected.Rd | 2
man/julian2date.Rd | 2
man/kapmeier.Rd | 12 ----
man/oddsratio.Rd | 2
man/or.midp.Rd | 2
man/ormidp.test.Rd | 2
man/oswego.Rd | 121 +++++++++++++++++++++++-----------------------
man/pois.conf.int.Rd | 2
man/rate2by2.test.Rd | 2
man/rateratio.Rd | 2
man/ratetable.Rd | 2
man/riskratio.Rd | 2
man/tab2by2.test.Rd | 2
man/table.margins.Rd | 2
man/wcgs.Rd | 84 ++++++++++++++++---------------
30 files changed, 145 insertions(+), 146 deletions(-)
Author: John Fox
Diff between effects versions 2.0-4 dated 2009-04-01 and 2.0-5 dated 2009-04-15
Title: Effect Displays for Linear, Generalized Linear,
Multinomial-Logit, and Proportional-Odds Logit Models
Description: Graphical and tabular effect displays, e.g., of
interactions, for linear generalized linear, multinomial-logit,
and proportional-odds logit models.
DESCRIPTION | 12 ++++++------
R/plot-summary-print-methods.R | 24 ++++++++++++------------
inst/CHANGES | 6 ++++++
man/BEPS.Rd | 11 +++++++++++
man/Titanic.Rd | 12 +++++++++++-
man/WVS.Rd | 12 ++++++++++++
man/effect.Rd | 7 +++++++
7 files changed, 65 insertions(+), 19 deletions(-)
Author: Peter Ruckdeschel, Matthias Kohl, Anja Hueller, Eleonara Feist
Title: Extensions of package distr for teaching Stochastics/Statistics
in secondary school
Description: Extensions of package distr and some additional
functionality
Diff between distrTeach versions 2.0.4 dated 2009-01-13 and 2.1 dated 2009-04-15
DESCRIPTION | 38 +++++++++++++++++++++----------------- inst/NEWS | 9 +++++++++ man/0distrTeach-package.Rd | 4 ++-- 3 files changed, 32 insertions(+), 19 deletions(-)
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Estimation and Testing classes based on package distr
Description: Evaluation (S4-)classes based on package distr for
evaluating procedures (estimators/tests) at data/simulation in
a unified way.
Diff between distrTEst versions 2.0.4 dated 2008-12-08 and 2.1 dated 2009-04-15
DESCRIPTION | 41 +++++++++++++++++++++++------------------ inst/NEWS | 9 +++++++++ man/0distrTEst-package.Rd | 5 ++--- 3 files changed, 34 insertions(+), 21 deletions(-)
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Simulation classes based on package distr
Description: Simulation (S4-)classes based on package distr
Diff between distrSim versions 2.0.4 dated 2009-01-13 and 2.1 dated 2009-04-15
DESCRIPTION | 36 ++++++++++++++++++++---------------- inst/NEWS | 16 ++++++++++++++++ man/0distrSim-package.Rd | 7 ++++--- 3 files changed, 40 insertions(+), 19 deletions(-)
Author: Matthias Kohl, Peter Ruckdeschel
Title: Object orientated implementation of probability models
Description: Object orientated implementation of probability models
based on packages 'distr' and 'distrEx'
Diff between distrMod versions 2.0.7 dated 2009-02-20 and 2.1 dated 2009-04-15
DESCRIPTION | 33 ++++---- NAMESPACE | 3 R/0distrModUtils.R | 110 +++++++++++++++++++++------- R/AllGeneric.R | 4 + R/AllPlot.R | 175 +++++++++++++++++++++++++++++++++------------ R/AllShow.R | 6 - R/Estimator.R | 40 +++++++++- R/L2GroupFamilies.R | 95 ++++++++++++++++++++---- R/MCEstimator.R | 20 +++-- R/MDEstimator.R | 11 ++ R/MLEstimator.R | 23 +++-- R/ParamFamily.R | 25 ++++-- R/SimpleL2ParamFamilies.R | 84 ++++++++++++++++++--- R/internalMleCalc.R | 23 +++-- R/mleCalc-methods.R | 2 R/modifyModel.R | 15 ++- inst/NEWS | 58 ++++++++++++++ man/0distrMod-package.Rd | 7 + man/L2ParamFamily-class.Rd | 69 +++++++++++++++++ man/internals.Rd | 23 +++-- man/modifyModel-methods.Rd | 3 man/trafo-methods.Rd | 9 ++ man/trafoEst.Rd |only 23 files changed, 657 insertions(+), 181 deletions(-)
Author: James Carpenter
Diff between copas versions 0.6-1 dated 2008-11-03 and 0.6-2 dated 2009-04-15
Title: Statistical methods to model and adjust for bias in
meta-analysis
Description: Copas selection model.
DESCRIPTION | 14 +++++++++-----
R/plot.copas.R | 7 ++++---
2 files changed, 13 insertions(+), 8 deletions(-)
Author: Rasmus E. Benestad
Diff between clim.pact versions 2.2-31 dated 2009-03-26 and 2.2-33 dated 2009-04-15
Title: Climate analysis and empirical-statistical downscaling (ESD)
package for monthly and daily data.
Description: The package contains R functions for retrieving data,
making climate analysis and downscaling of monthly mean and
daily mean global climate scenarios. (Windows-users may need to
obtain the 'ncdf' package from URL
'http://www.stats.ox.ac.uk/pub/RWin/' to get clim.pact to
work). The package is also described in the book
'Empirical-Statistical Downscaling
(http://www.worldscibooks.com/environsci/6908.html)
DESCRIPTION | 8 ++++----
R/corField.R | 14 ++++++++------
R/ds.R | 27 +++++++++++----------------
R/eof.R | 46 ++++++++++++++++++++++++++++------------------
R/getnordklim.R | 19 +++++++++++++++----
R/objDS.R | 24 +++++++++++++-----------
R/retrieve.nc.R | 17 +++++++++--------
man/retrieve.nc.Rd | 3 ++-
8 files changed, 90 insertions(+), 68 deletions(-)
Author: Martin Maechler partly based on code from Robert Gentleman
Title: Construct Graphs of S4 Class Hierarchies
Description: Construct directed graphs of S4 class hierarchies and
visualize them. In general, these graphs typically are DAGs
(directed acyclic graphs), often simple trees in practice.
Diff between classGraph versions 0.7-1 dated 2008-05-06 and 0.7-2 dated 2009-04-15
ChangeLog | 4 ++++ DESCRIPTION | 12 +++++++----- R/Class-hier-fn.R | 7 ++++--- man/numOutEdges.Rd | 2 +- 4 files changed, 16 insertions(+), 9 deletions(-)
Author: Jens Oehlschlägel
Title: A class for vectors of 1-bit booleans
Description: bitmapped vectors of booleans (no NAs), coercion from and
to logicals, integers and integer subscripts; fast boolean
operators and fast summary statistics. With bit vectors you can
store true binary booleans {FALSE,TRUE} at the expense of 1 bit
only, on a 32 bit architecture this means factor 32 less RAM
and factor 32 more speed on boolean operations. With this speed
gain it even pays-off to convert to bit in order to avoid a
single boolean operation on logicals or a single set operation
on (longer) integer subscripts, the pay-off is dramatic when
such components are used more than once. Reading from and
writing to bit is approximately as fast as accessing standard
logicals - mostly due to R's time for memory allocation. The
package allows to work with pre-allocated memory for return
values by calling .Call() directly: when evaluating the speed
of C-access with pre-allocated vector memory, coping from bit
to logical requires only 70% of the time for copying from
logical to logical; and copying from logical to bit comes at a
performance penalty of 150%.
Diff between bit versions 1.0-1 dated 2009-02-15 and 1.0-2 dated 2009-04-15
ANNOUNCEMENT.txt | 64 - DESCRIPTION | 40 R/bit.R | 2116 +++++++++++++++++++++++++------------------------- R/zzz.R | 28 README_devel.txt | 20 exec/make_rd.pl | 66 - man/Extract.rd | 82 - man/Logical.rd | 118 +- man/Summary.rd | 160 +-- man/as.bit.rd | 88 +- man/as.logical.bit.rd | 86 +- man/bit-package.rd | 458 +++++----- man/bit_init.rd | 60 - man/length.bit.rd | 70 - man/regtest.bit.rd | 66 - prebuild.sh | 30 src/bit.c | 2 17 files changed, 1779 insertions(+), 1775 deletions(-)
Author: Michael J. Kane and John W. Emerson
Title: Manage massive matrices in R using C++, with support for shared
memory and memory-mapped files.
Description: Use C++ to create, store, access, and manipulate massive
matrices. Matrices may optionally be allocated to shared
memory and/or may use memory-mapped files.
Diff between bigmemory versions 2.3 dated 2008-07-28 and 3.5 dated 2009-04-15
bigmemory-2.3/bigmemory/R/kmeans.R |only bigmemory-2.3/bigmemory/configure.win |only bigmemory-2.3/bigmemory/ipc.R |only bigmemory-2.3/bigmemory/man/add.cols.Rd |only bigmemory-2.3/bigmemory/man/is.shared.Rd |only bigmemory-2.3/bigmemory/man/kmeans.big.matrix.Rd |only bigmemory-2.3/bigmemory/man/shared.big.matrix.Rd |only bigmemory-2.3/bigmemory/man/shared.deepcopy.Rd |only bigmemory-2.3/bigmemory/namespace.unix |only bigmemory-2.3/bigmemory/namespace.win |only bigmemory-2.3/bigmemory/src/BMMutex.cpp |only bigmemory-2.3/bigmemory/src/BMMutex.h |only bigmemory-2.3/bigmemory/src/DestroyShmIfLast.cpp |only bigmemory-2.3/bigmemory/src/DestroyShmIfLast.h |only bigmemory-2.3/bigmemory/src/Makevars |only bigmemory-2.3/bigmemory/src/bm_defines.h |only bigmemory-2.3/bigmemory/src/ostypedef.h |only bigmemory-2.3/bigmemory/sysctl.conf |only bigmemory-2.3/bigmemory/unixdef.h |only bigmemory-2.3/bigmemory/windef.h |only bigmemory-3.5/bigmemory/DESCRIPTION | 29 bigmemory-3.5/bigmemory/NAMESPACE | 6 bigmemory-3.5/bigmemory/R/bigmatrix.R | 354 ++-- bigmemory-3.5/bigmemory/R/bigmatrixLib.R | 86 - bigmemory-3.5/bigmemory/R/bigmatrixShm.R | 282 ++- bigmemory-3.5/bigmemory/R/is.filebacked.R |only bigmemory-3.5/bigmemory/R/mmap.R | 6 bigmemory-3.5/bigmemory/R/utils.R |only bigmemory-3.5/bigmemory/R/zzz.R | 6 bigmemory-3.5/bigmemory/cleanup | 25 bigmemory-3.5/bigmemory/configure | 10 bigmemory-3.5/bigmemory/configure.R |only bigmemory-3.5/bigmemory/configure.Rout |only bigmemory-3.5/bigmemory/include |only bigmemory-3.5/bigmemory/man/attach.big.matrix.Rd | 21 bigmemory-3.5/bigmemory/man/big.matrix-class.Rd | 19 bigmemory-3.5/bigmemory/man/big.matrix.Rd | 121 + bigmemory-3.5/bigmemory/man/biglm.big.matrix.Rd | 2 bigmemory-3.5/bigmemory/man/bigmemory-package.Rd | 38 bigmemory-3.5/bigmemory/man/binit.Rd |only bigmemory-3.5/bigmemory/man/deepcopy.Rd | 17 bigmemory-3.5/bigmemory/man/hash.mat.Rd | 2 bigmemory-3.5/bigmemory/man/mwhich.Rd | 10 bigmemory-3.5/bigmemory/man/rw.mutex-class.Rd | 8 bigmemory-3.5/bigmemory/man/rw.mutex.Rd | 24 bigmemory-3.5/bigmemory/man/write.big.matrix.Rd | 18 bigmemory-3.5/bigmemory/src/BigMatrix.cpp | 926 +++++++++--- bigmemory-3.5/bigmemory/src/BigMatrix.h | 178 +- bigmemory-3.5/bigmemory/src/BigMatrixAccessor.hpp |only bigmemory-3.5/bigmemory/src/BigMemoryDefines.h |only bigmemory-3.5/bigmemory/src/BigMemoryMutex.cpp |only bigmemory-3.5/bigmemory/src/BigMemoryMutex.h |only bigmemory-3.5/bigmemory/src/CUserMutex.cpp | 40 bigmemory-3.5/bigmemory/src/CbigmemoRy.cpp | 1579 +++++++++++++++++----- bigmemory-3.5/bigmemory/src/CbigmemoRyLib.cpp | 54 bigmemory-3.5/bigmemory/src/MSCexceptions.h |only bigmemory-3.5/bigmemory/src/Makevars.darwin |only bigmemory-3.5/bigmemory/src/Makevars.linux |only bigmemory-3.5/bigmemory/src/Makevars.win |only bigmemory-3.5/bigmemory/src/SharedCounter.cpp |only bigmemory-3.5/bigmemory/src/SharedCounter.h |only bigmemory-3.5/bigmemory/src/bigmemoryutils.cpp |only bigmemory-3.5/bigmemory/src/isna.hpp |only bigmemory-3.5/bigmemory/src/tab2space.pl |only bigmemory-3.5/bigmemory/src/util.cpp | 58 bigmemory-3.5/bigmemory/src/util.h | 48 bigmemory-3.5/bigmemory/src/writedescr.txt |only 67 files changed, 2875 insertions(+), 1092 deletions(-)
Author: Manuel J. A. Eugster
Diff between archetypes versions 0.1 dated 2008-12-11 and 0.1-1 dated 2009-04-15
Title: Archetypal Analysis
Description: The main function archetypes implements a framework for
archetypal analysis supporting arbitary problem solving
mechanisms for the different conceputal parts of the algorithm.
NOTE: This package is used as real-world test application for
the Roxygen documentation system. At the moment, Roxygen does
not produce "good" help pages for the everyday use of a
package; we refer to the vignette for a consistent package
illustration.
DESCRIPTION | 49 +++++++++++++++++++++------------------
NAMESPACE | 3 ++
R/archetypes-class.R | 31 ++++++++++++++++++++++--
R/archetypes-kit.R | 11 ++++++--
R/archetypes-movie.R | 60 ++++++++++++++++++++++++++++++++++++++++++++++--
R/archetypes-step.R | 4 +--
R/pcplot.R | 4 +--
R/skeletonplot.R | 1
inst/CITATION | 2 -
inst/doc/archetypes.bib | 4 +--
inst/doc/archetypes.pdf |binary
man/archetypes.Rd | 2 -
man/as.archetypes.Rd | 11 +++++---
man/bestModel.Rd | 2 -
man/betas.Rd |only
man/movieplot.Rd | 7 ++++-
man/movieplot2.Rd |only
man/pcplot-methods.Rd | 2 -
man/skeletonplot.Rd | 2 -
19 files changed, 148 insertions(+), 47 deletions(-)
Author: Alexis Gabadinho
Diff between TraMineR versions 1.1 dated 2009-01-16 and 1.2 dated 2009-04-15
Title: Sequences and trajectories mining for social scientists
Description: This package is a toolbox for sequence manipulation,
description, rendering and more generally sequence data mining
in the field of social sciences. Though it is primarily
intended for analyzing state or event sequences that describe
life courses such as family formation histories or professional
careers its features apply indeed also to many other kinds of
categorical sequence data. It accepts as input many different
sequence representations and provides tools for translating
sequences from one format to another. It offers several
statistical functions for describing and rendering sequences,
for computing distances between sequences with different
metrics among which optimal matching, the longest common prefix
and the longest common subsequence, and simple functions for
extracting the most frequent subsequences and identifying the
most discriminating ones among them. A user's guide can be
found on TraMineR's web page.
TraMineR-1.1/TraMineR/R/dissreg.R |only
TraMineR-1.1/TraMineR/R/seqcplot.R |only
TraMineR-1.1/TraMineR/R/seqctype.R |only
TraMineR-1.1/TraMineR/man/dissreg.Rd |only
TraMineR-1.2/TraMineR/DESCRIPTION | 30 -
TraMineR-1.2/TraMineR/NAMESPACE | 5
TraMineR-1.2/TraMineR/NEWS | 125 ++--
TraMineR-1.2/TraMineR/R/BIOSPELL_to_STS.R | 12
TraMineR-1.2/TraMineR/R/LCPdist.R | 32 -
TraMineR-1.2/TraMineR/R/LCSdist.R | 5
TraMineR-1.2/TraMineR/R/Levenshtein.R | 7
TraMineR-1.2/TraMineR/R/STS_to_TSE.R | 81 +-
TraMineR-1.2/TraMineR/R/TraMineR-dplot.R |only
TraMineR-1.2/TraMineR/R/TraMineR-fplot.R |only
TraMineR-1.2/TraMineR/R/TraMineR-iplot.R |only
TraMineR-1.2/TraMineR/R/TraMineR-legend.R | 19
TraMineR-1.2/TraMineR/R/TraMineR-mscore.R |only
TraMineR-1.2/TraMineR/R/TraMineR-mtplot.R |only
TraMineR-1.2/TraMineR/R/TraMineR-rplot.R |only
TraMineR-1.2/TraMineR/R/TraMineR-trunc.R | 35 -
TraMineR-1.2/TraMineR/R/checktriangleineq.R |only
TraMineR-1.2/TraMineR/R/dissassoc.R | 221 +++----
TraMineR-1.2/TraMineR/R/disscenter.R | 87 +-
TraMineR-1.2/TraMineR/R/dissmfac.R |only
TraMineR-1.2/TraMineR/R/disstree.r | 619 +++++++++------------
TraMineR-1.2/TraMineR/R/disstree2dot.R |only
TraMineR-1.2/TraMineR/R/dissvar.R | 20
TraMineR-1.2/TraMineR/R/dist2matrix.R |only
TraMineR-1.2/TraMineR/R/entropy.R | 2
TraMineR-1.2/TraMineR/R/implicativestat.R |only
TraMineR-1.2/TraMineR/R/normdist.R |only
TraMineR-1.2/TraMineR/R/plot.stslist.R |only
TraMineR-1.2/TraMineR/R/seqST.R | 10
TraMineR-1.2/TraMineR/R/seqconc.R | 28
TraMineR-1.2/TraMineR/R/seqdecomp.R | 6
TraMineR-1.2/TraMineR/R/seqdef.R | 29
TraMineR-1.2/TraMineR/R/seqdiff.R | 155 ++---
TraMineR-1.2/TraMineR/R/seqdist.R | 115 ++-
TraMineR-1.2/TraMineR/R/seqdistold.R | 5
TraMineR-1.2/TraMineR/R/seqdplot.R | 110 ---
TraMineR-1.2/TraMineR/R/seqdss.R | 37 -
TraMineR-1.2/TraMineR/R/seqdur.R | 35 -
TraMineR-1.2/TraMineR/R/seqecmpgroup.R | 6
TraMineR-1.2/TraMineR/R/seqeconstraint.R | 6
TraMineR-1.2/TraMineR/R/seqecreate.R | 6
TraMineR-1.2/TraMineR/R/seqedist.R |only
TraMineR-1.2/TraMineR/R/seqefsub.R | 2
TraMineR-1.2/TraMineR/R/seqetm.R | 3
TraMineR-1.2/TraMineR/R/seqfcheck.R | 18
TraMineR-1.2/TraMineR/R/seqformat.R | 51 +
TraMineR-1.2/TraMineR/R/seqfplot.R | 142 ----
TraMineR-1.2/TraMineR/R/seqgen.R | 10
TraMineR-1.2/TraMineR/R/seqient.R | 51 -
TraMineR-1.2/TraMineR/R/seqientc.R |only
TraMineR-1.2/TraMineR/R/seqientdiff.R |only
TraMineR-1.2/TraMineR/R/seqiplot.R | 134 ----
TraMineR-1.2/TraMineR/R/seqistatd.R | 12
TraMineR-1.2/TraMineR/R/seqlegend.R | 4
TraMineR-1.2/TraMineR/R/seqlength.R | 19
TraMineR-1.2/TraMineR/R/seqlogp.R |only
TraMineR-1.2/TraMineR/R/seqmpos.R | 22
TraMineR-1.2/TraMineR/R/seqmtplot.R | 94 ---
TraMineR-1.2/TraMineR/R/seqprep.R | 12
TraMineR-1.2/TraMineR/R/seqrep.R |only
TraMineR-1.2/TraMineR/R/seqrplot.R |only
TraMineR-1.2/TraMineR/R/seqsubsn.R | 9
TraMineR-1.2/TraMineR/R/seqtab.R | 20
TraMineR-1.2/TraMineR/R/seqxtract.R | 11
TraMineR-1.2/TraMineR/R/stslist-methods.R | 6
TraMineR-1.2/TraMineR/R/subseqelist.R | 6
TraMineR-1.2/TraMineR/R/summary-stslist.R | 1
TraMineR-1.2/TraMineR/TODO.txt |only
TraMineR-1.2/TraMineR/demo/Event_sequences.R | 49 -
TraMineR-1.2/TraMineR/inst/CITATION |only
TraMineR-1.2/TraMineR/man/actcal.Rd | 49 +
TraMineR-1.2/TraMineR/man/biofam.Rd | 60 +-
TraMineR-1.2/TraMineR/man/dissassoc.Rd | 46 -
TraMineR-1.2/TraMineR/man/disscenter.Rd | 49 +
TraMineR-1.2/TraMineR/man/dissmfac.Rd |only
TraMineR-1.2/TraMineR/man/disstree.Rd | 61 +-
TraMineR-1.2/TraMineR/man/disstree2dot.Rd | 26
TraMineR-1.2/TraMineR/man/disstreeleaf.Rd | 2
TraMineR-1.2/TraMineR/man/dissvar.Rd | 41 -
TraMineR-1.2/TraMineR/man/mvad.Rd | 57 +
TraMineR-1.2/TraMineR/man/plot.stslist.Rd |only
TraMineR-1.2/TraMineR/man/plot.subseqelist.Rd | 10
TraMineR-1.2/TraMineR/man/plot.subseqelistchisq.Rd | 26
TraMineR-1.2/TraMineR/man/seqconc.Rd | 3
TraMineR-1.2/TraMineR/man/seqdef.Rd | 52 -
TraMineR-1.2/TraMineR/man/seqdiff.Rd | 10
TraMineR-1.2/TraMineR/man/seqdist.Rd | 32 -
TraMineR-1.2/TraMineR/man/seqdplot.Rd | 52 -
TraMineR-1.2/TraMineR/man/seqdss.Rd | 5
TraMineR-1.2/TraMineR/man/seqdur.Rd | 4
TraMineR-1.2/TraMineR/man/seqe.Rd | 12
TraMineR-1.2/TraMineR/man/seqeapplysub.Rd | 49 -
TraMineR-1.2/TraMineR/man/seqecmpgroup.Rd | 28
TraMineR-1.2/TraMineR/man/seqeconstraint.Rd | 19
TraMineR-1.2/TraMineR/man/seqecontain.Rd | 13
TraMineR-1.2/TraMineR/man/seqecreate.Rd | 36 -
TraMineR-1.2/TraMineR/man/seqefsub.Rd | 47 -
TraMineR-1.2/TraMineR/man/seqelength.Rd | 12
TraMineR-1.2/TraMineR/man/seqetm.Rd | 42 -
TraMineR-1.2/TraMineR/man/seqfcheck.Rd | 10
TraMineR-1.2/TraMineR/man/seqformat.Rd | 12
TraMineR-1.2/TraMineR/man/seqfplot.Rd | 50 -
TraMineR-1.2/TraMineR/man/seqient.Rd | 8
TraMineR-1.2/TraMineR/man/seqiplot.Rd | 71 --
TraMineR-1.2/TraMineR/man/seqistatd.Rd | 3
TraMineR-1.2/TraMineR/man/seqlegend.Rd | 3
TraMineR-1.2/TraMineR/man/seqmpos.Rd | 17
TraMineR-1.2/TraMineR/man/seqmtplot.Rd | 33 -
TraMineR-1.2/TraMineR/man/seqstatl.Rd | 44 -
TraMineR-1.2/TraMineR/man/seqtab.Rd | 5
TraMineR-1.2/TraMineR/man/seqtree2dot.Rd |only
TraMineR-1.2/TraMineR/src/dist2matrix.c |only
TraMineR-1.2/TraMineR/src/distancefunctions.cpp | 372 ++++++------
TraMineR-1.2/TraMineR/src/ffunctions.c | 238 ++++----
TraMineR-1.2/TraMineR/src/inertiafunctions.c | 149 ++++-
TraMineR-1.2/TraMineR/src/saltt.cpp |only
TraMineR-1.2/TraMineR/src/seqedist.cpp |only
121 files changed, 2124 insertions(+), 2258 deletions(-)
Author: Stephen A Sefick Jr.
Title: Stream Metabolism-A package for calculating single station
metabolism from diurnal Oxygen curves
Description: This package contains functions for calculating GPP, NDM,
and R from single station diurnal Oxygen curves
Diff between StreamMetabolism versions 0.03-1 dated 2009-01-09 and 0.03-2 dated 2009-04-15
DESCRIPTION | 16 ++++++++++------ R/EcosystemProduction.K.R |only man/EcosystemProduction.K.Rd |only 3 files changed, 10 insertions(+), 6 deletions(-)
More information about StreamMetabolism at CRAN
Permanent link
Author: Rense Nieuwenhuis
Title: Automated access to old World Fertility Survey data saved in
fixed-width format based on ISI-formatted codebooks.
Description: Old statistical data was often stored in formats that are
difficult to gain access to by modern statistical software. An
example of this are the data-files of the `World Fertility
Survey', which are stored in fixed-width format and accompanied
by codebooks in a format developed by the International
Statistical Institute. The read.isi package allows to gain
access to these statistical data automatically, or to convert
to codebook to SPSS-syntax.
Diff between Read.isi versions 0.5 dated 2008-08-07 and 0.5.1 dated 2009-04-15
DESCRIPTION | 22 ++++++++++++++++------ man/Read.isi-package.Rd | 4 ++-- 2 files changed, 18 insertions(+), 8 deletions(-)
Author: Erin Hodgess
Diff between RcmdrPlugin.epack versions 1.1-4 dated 2009-03-11 and 1.2.1 dated 2009-04-15
More information about RcmdrPlugin.epack at CRAN
Title: Rcmdr plugin for time series
Description: This package provides an Rcmdr "plug-in" based on the time
series functions. Contributors: G. Jay Kerns, John Fox, and
Richard Heiberger.
DESCRIPTION | 13 -
R/RcmdrPlugin.epack.R | 309 ++++++++++++++++++++++++++++++++++++--
inst/etc/menus.txt | 14 +
man/RcmdrPlugin.epack-internal.Rd | 12 +
4 files changed, 332 insertions(+), 16 deletions(-)
Permanent link
Author: Daniela Witten and Rob Tibshirani
Title: Penalized Multivariate Analysis
Description: Performs Penalized Multivariate Analysis: a penalized
matrix decomposition, sparse principal components analysis, and
sparse canonical correlation analysis, described in the
following paper: Witten, Tibshirani and Hastie (2009) A
penalized matrix decomposition, with applications to sparse
principal components and canonical correlation analysis.
Diff between PMA versions 1.0.1 dated 2009-02-16 and 1.0.2 dated 2009-04-15
DESCRIPTION | 15 +++++++++++---- man/CCA.Rd | 5 +---- 2 files changed, 12 insertions(+), 8 deletions(-)
Author: Jarrod Hadfield
Title: MCMC Generalised Linear Mixed Models
Description: MCMC Generalised Linear Mixed Models
Diff between MCMCglmm versions 1.07 dated 2009-04-04 and 1.08 dated 2009-04-15
MCMCglmm-1.07/MCMCglmm/src/dcmvnorm.h |only MCMCglmm-1.08/MCMCglmm/DESCRIPTION | 8 - MCMCglmm-1.08/MCMCglmm/R/MCMCglmm.R | 106 ++++++++++++++----------- MCMCglmm-1.08/MCMCglmm/R/inverseA.R | 1 MCMCglmm-1.08/MCMCglmm/inst/doc/Figures/TEST.R | 2 MCMCglmm-1.08/MCMCglmm/inst/doc/Tutorial.pdf |binary MCMCglmm-1.08/MCMCglmm/man/MCMCglmm.Rd | 5 - MCMCglmm-1.08/MCMCglmm/src/MCMCglmm.cc | 26 +----- MCMCglmm-1.08/MCMCglmm/src/cs_dcmvnorm.c | 3 MCMCglmm-1.08/MCMCglmm/src/cs_kroneckerA.c | 1 MCMCglmm-1.08/MCMCglmm/src/cs_kroneckerH.c | 1 MCMCglmm-1.08/MCMCglmm/src/cs_kroneckerI.c | 1 MCMCglmm-1.08/MCMCglmm/src/inverseA.cc | 3 13 files changed, 75 insertions(+), 82 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development;
structures and even function names may change in the future.
Diff between FrF2 versions 0.9-1 dated 2009-03-24 and 0.91-1 dated 2009-04-15
FrF2-0.9-1/FrF2/R/util.R |only FrF2-0.9-1/FrF2/R/words.R |only FrF2-0.91-1/FrF2/DESCRIPTION | 12 - FrF2-0.91-1/FrF2/NAMESPACE | 6 FrF2-0.91-1/FrF2/R/CatalogueAccessors.R |only FrF2-0.91-1/FrF2/R/FrF2.R | 154 +++++++++++--- FrF2-0.91-1/FrF2/R/estimable2fis.R |only FrF2-0.91-1/FrF2/R/fac.design.R |only FrF2-0.91-1/FrF2/R/pb.R | 43 +++- FrF2-0.91-1/FrF2/R/sysdata.rda |binary FrF2-0.91-1/FrF2/R/utilcat.R |only FrF2-0.91-1/FrF2/R/utilpb.R |only FrF2-0.91-1/FrF2/inst/NEWS | 33 +++ FrF2-0.91-1/FrF2/man/CatalogueAccessors.Rd | 41 ++- FrF2-0.91-1/FrF2/man/FrF2-package.Rd | 8 FrF2-0.91-1/FrF2/man/FrF2.Rd | 301 ++++++++++++++++++++++++++--- FrF2-0.91-1/FrF2/man/class-design.Rd |only FrF2-0.91-1/FrF2/man/pb.Rd | 50 ++++ FrF2-0.91-1/FrF2/man/utilitiesCat.Rd | 78 +++++++ 19 files changed, 621 insertions(+), 105 deletions(-)