Thu, 23 Apr 2009

New package binarySimCLF with initial version 1.0
Package: binarySimCLF
Title: Simulates Correlated Binary Data
Version: 1.0
Date: 2009-04-20
Author: Kunthel By and Bahjat F. Qaqish
Maintainer: Kunthel By
Description: The algorithm is based Qaqish (2003)
LazyLoad: yes
License: GPL (>= 2)
Packaged: Thu Apr 23 13:33:30 2009; euclid
Repository: CRAN
Date/Publication: 2009-04-23 18:41:21

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Package MixSim updated to version 0.1-02 with previous version 0.1-01 dated 2009-04-22

Author: Volodymyr Melnykov , Wei-Chen Chen , Ranjan Maitra
Title: Simulating Data to Study Performance of Clustering Algorithms.
Description: MixSim

Diff between MixSim versions 0.1-01 dated 2009-04-22 and 0.1-02 dated 2009-04-23

 MixSim-0.1-01/MixSim/libQF.c      |only
 MixSim-0.1-02/MixSim/DESCRIPTION  |    8 ++++----
 MixSim-0.1-02/MixSim/R/zzz.R      |only
 MixSim-0.1-02/MixSim/fixed.txt    |    4 ++--
 MixSim-0.1-02/MixSim/log.txt      |    3 +++
 MixSim-0.1-02/MixSim/src/Makevars |    2 +-
 6 files changed, 10 insertions(+), 7 deletions(-)

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Package vowels updated to version 1.0-2 with previous version 1.0-1 dated 2009-03-20

Author: Tyler Kendall and Erik R. Thomas
Title: Vowel Manipulation, Normalization, and Plotting
Description: vowels is an R package for the manipulation, normalization, and plotting of phonetic and sociophonetic vowel formant data. vowels is the backend for the NORM website.

Diff between vowels versions 1.0-1 dated 2009-03-20 and 1.0-2 dated 2009-04-23

 DESCRIPTION           |    8 ++++----
 R/vowels.R            |   37 ++++++++++++++++++++++++++-----------
 man/vowelplot.Rd      |   26 +++++++++++++++++---------
 man/vowels-package.Rd |    4 ++--
 4 files changed, 49 insertions(+), 26 deletions(-)

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Package peperr updated to version 1.1-3 with previous version 1.1-2 dated 2009-01-22

Author: Christine Porzelius, Harald Binder
Title: Parallelised Estimation of Prediction Error
Description: Package peperr is designed for prediction error estimation through resampling techniques, possibly accelerated by parallel execution on a compute cluster. Newly developed model fitting routines can be easily incorporated.

Diff between peperr versions 1.1-2 dated 2009-01-22 and 1.1-3 dated 2009-04-23

 DESCRIPTION                   |   18 ++++++++++++------
 NAMESPACE                     |    2 +-
 R/complexity.mincv.CoxBoost.R |    3 +--
 R/ipec.R                      |only
 R/peperr.R                    |   22 +++++++++++-----------
 R/pmpec.R                     |    2 +-
 changeLog                     |    3 +++
 man/ipec.Rd                   |only
 man/peperr.Rd                 |    4 ++--
 man/perr.Rd                   |    5 +++--
 man/pmpec.Rd                  |    5 +++--
 11 files changed, 37 insertions(+), 27 deletions(-)

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Package mi updated to version 0.06-5 with previous version 0.06-4.01 dated 2009-04-21

Author: Andrew Gelman , Jennifer Hill , Masanao Yajima , Yu-Sung Su , Maria Grazia Pittau
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking

Diff between mi versions 0.06-4.01 dated 2009-04-21 and 0.06-5 dated 2009-04-23

 CHANGELOG       |    5 +++
 DESCRIPTION     |    8 ++--
 R/AllInternal.R |   74 +++++++++++++++++++++++++++++++---------------
 R/mi.R          |   90 +++++++++++++++++++++++++++++---------------------------
 R/mi.info.R     |   53 ++++++++++++++++++--------------
 R/mi.polr.R     |    8 ++++
 man/mi.polr.Rd  |    2 -
 7 files changed, 145 insertions(+), 95 deletions(-)

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Package gplots updated to version 2.7.0 with previous version 2.6.0 dated 2008-04-09

Author: Gregory R. Warnes. Includes R source code and/or documentation contributed by (in alphabetical order): Ben Bolker, Lodewijk Bonebakker, Robert Gentleman, Wolfgang Huber Andy Liaw, Thomas Lumley, Martin Maechler, Arni Magnusson, Steffen Moeller, Marc Schwartz, Bill Venables
Title: Various R programming tools for plotting data
Description: Various R programming tools for plotting data

Diff between gplots versions 2.6.0 dated 2008-04-09 and 2.7.0 dated 2009-04-23

 ChangeLog          |  919 +++++++++++++++++++++++++++--------------------------
 DESCRIPTION        |   19 -
 NAMESPACE          |    6 
 NEWS               |   34 +
 R/balloonplot.R    |  120 ++++--
 R/bandplot.R       |   36 +-
 R/plot.lm.R        |   17 
 R/venn.R           |only
 TODO               |only
 inst/ChangeLog     |  919 +++++++++++++++++++++++++++--------------------------
 inst/NEWS          |   34 +
 inst/TODO          |only
 man/balloonplot.Rd |   15 
 man/bandplot.Rd    |    6 
 man/barplot2.Rd    |    4 
 man/ooplot.Rd      |    2 
 man/plot.lm2.Rd    |   47 +-
 man/space.Rd       |    2 
 man/venn.Rd        |only
 19 files changed, 1197 insertions(+), 983 deletions(-)

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Package effects updated to version 2.0-6 with previous version 2.0-5 dated 2009-04-15

Author: John Fox and Jangman Hong. We are grateful to Robert Andersen, David Firth, and Michael Friendly, for various suggestions.
Title: Effect Displays for Linear, Generalized Linear, Multinomial-Logit, and Proportional-Odds Logit Models
Description: Graphical and tabular effect displays, e.g., of interactions, for linear generalized linear, multinomial-logit, and proportional-odds logit models.

Diff between effects versions 2.0-5 dated 2009-04-15 and 2.0-6 dated 2009-04-23

 DESCRIPTION                    |   11 +++++------
 R/effects.R                    |    5 +++--
 R/plot-summary-print-methods.R |   17 ++++++++++-------
 inst/CHANGES                   |    8 ++++++++
 man/effects-package.Rd         |only
 5 files changed, 26 insertions(+), 15 deletions(-)

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Package car updated to version 1.2-14 with previous version 1.2-13 dated 2009-04-03

Author: John Fox . I am grateful to Douglas Bates, David Firth, Michael Friendly, Gregor Gorjanc, Spencer Graves, Richard Heiberger, Georges Monette, Henric Nilsson, Derek Ogle, Brian Ripley, Sanford Weisberg, and Achim Zeileis for various suggestions and contributions.
Title: Companion to Applied Regression
Description: This package accompanies J. Fox, An R and S-PLUS Companion to Applied Regression, Sage, 2002. The package contains mostly functions for applied regression, linear models, and generalized linear models, with an emphasis on regression diagnostics, particularly graphical diagnostic methods. There are also some utility functions. With some exceptions, I have tried not to duplicate capabilities in the basic distribution of R, nor in widely used packages. Where relevant, the functions in car are consistent with na.action = na.omit or na.exclude.

Diff between car versions 1.2-13 dated 2009-04-03 and 1.2-14 dated 2009-04-23

 DESCRIPTION        |    8 ++++----
 data/Chile.rda     |binary
 inst/CHANGES       |    5 +++++
 man/car-package.Rd |    4 ++--
 4 files changed, 11 insertions(+), 6 deletions(-)

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New package CHNOSZ with initial version 0.8
Package: CHNOSZ
Title: Chemical Thermodynamics and Activity Diagrams
Version: 0.8
Date: 2009-04-22
Author: Jeffrey M. Dick
Maintainer: Jeffrey M. Dick
Depends: utils
Description: Calculation of the standard molal thermodynamic properties and chemical affinities of reactions between and among minerals, inorganic, organic, and/or biomolecular aqueous and crystalline species. Incorporation of an extensive database of thermodynamic properties of species and algorithms for computing the standard thermodynamic properties of neutral and ionized proteins from amino acid group contributions. Generation of chemical speciation and predominance diagrams for stable and metastable equilibrium in open systems as a function of temperature, pressure, and chemical activities or fugacities of basis species.
License: GPL-2
ZipData: no
Packaged: 2009-04-23 02:51:33 UTC; jedick
Repository: CRAN
Date/Publication: 2009-04-23 07:11:01

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New package Multiclasstesting with initial version 1.0.0
Package: Multiclasstesting
Type: Package
Title: Performance of N-ary classification testing
Version: 1.0.0
Date: 2009-04-21
Author: Nardini, C. and Liu, Y-H.
Maintainer: Christine Nardini
Description: Evaluate the performance of classifying
License: GPL-2
LazyLoad: yes
Packaged: 2009-04-23 07:06:14 UTC; hornik
Repository: CRAN
Date/Publication: 2009-04-23 07:09:50

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