Author: David Meyer
Diff between StatDataML versions 1.0-17 dated 2009-03-31 and 1.0-18 dated 2009-04-26
Title: implementation of the StatDataML proposal
Description: read and write StatDataML files
DESCRIPTION | 8 ++++----
inst/CITATION | 5 ++---
2 files changed, 6 insertions(+), 7 deletions(-)
Author: Rainer Opgen-Rhein, Verena Zuber, and Korbinian Strimmer.
Title: Shrinkage t Statistic and Correlation-Adjusted t Score
Description: This package implements the "shrinkage t" statistic
introduced in Opgen-Rhein and Strimmer (2007) and a shrinkage
estimate of the "correlation-adjusted t-score" (cat score)
described in Zuber and Strimmer (2009). It also offers a
convenient interface to a number of other regularized
t-statistics commonly employed in high-dimensional case-control
studies.
Diff between st versions 1.1.1 dated 2009-02-05 and 1.1.2 dated 2009-04-26
DESCRIPTION | 23 +++++++++++++---------- NEWS | 7 +++++++ R/cst.R |only R/lait.R |only man/cst.stat.Rd |only man/lait.stat.Rd |only man/shrinkcat.stat.Rd | 34 ++++++++++++++++++---------------- man/st.package.Rd | 7 ++++++- 8 files changed, 44 insertions(+), 27 deletions(-)
Author: Alex Couture-Beil
Diff between rjson versions 0.1.4 dated 2009-01-02 and 0.1.5 dated 2009-04-26
Title: JSON for R
Description: Converts R object into JSON objects and vice-versa
DESCRIPTION | 22 ++++++++++++----------
R/json.R | 10 +++++-----
inst |only
man/newJSONParser.Rd | 8 ++++----
4 files changed, 21 insertions(+), 19 deletions(-)
Author: Rense Nieuwenhuis, Ben Pelzer, Manfred te Grotenhuis
Title: Tools for recognizing influential data in mixed models
Description: influence.ME provides a collection of tool for calculating
measures of influential data for mixed effects models. The
basic rationale behind identifying influential data is that
when iteratively single units are omitted from the data, models
based on these data should not produce substantially different
estimates. To standardize the assessment of how influential a
(single group of) observation(s) is, several measures of
influence are common practice. First, DFBETAS is a standardized
measure of the absolute difference between the estimate with a
particular case included and the estimate without that
particular case. Second, Cook's distance provides an overall
measurement of the change in all parameter estimates, or a
selection thereof.
Diff between influence.ME versions 0.5 dated 2009-04-15 and 0.6 dated 2009-04-26
DESCRIPTION | 9 +++-- R/ME.cook.R | 11 ++++-- R/ME.dfbetas.R | 29 ++++++++++++++--- R/ME.pchange.R |only R/dp.ME.cook.R | 9 ++++- R/dp.ME.dfbetas.R | 4 +- R/dp.ME.pchange.R |only R/estex.R | 72 ++++++++++++++++++++++---------------------- R/exclude.influence.R | 24 ++++++++++---- man/ME.cook.Rd | 3 + man/ME.dfbetas.Rd | 7 +++- man/ME.pchange.Rd |only man/dp.ME.cook.Rd | 11 +++--- man/dp.ME.dfbetas.Rd | 5 ++- man/dp.ME.pchange.Rd |only man/influence.ME-package.Rd | 8 ++-- 16 files changed, 119 insertions(+), 73 deletions(-)
Author: Patrick Brown
Title: Generalised Linear Mixed Models and Spatial Models with BUGS
Description: Write bugs model files for hierarchical and spatial
models, arranges unbalanced data in ragged arrays, and creates
starting values.
Diff between glmmBUGS versions 1.5 dated 2009-01-13 and 1.6 dated 2009-04-26
DESCRIPTION | 32 ++++++++++++++++++------------ Paper |only R/getDesignMatrix.R | 8 +++++++ R/getStartingValues.R | 49 ++++++++++++++++++++++++++++++----------------- R/glmmBUGS.R | 19 +++++++++++++----- R/restoreParams.R | 9 ++++++++ data/ontario.RData |binary data/ontarioResult.RData |binary data/popDataAdjMat.RData |binary man/addSpatial.Rd | 2 - man/glmmBUGS.Rd | 22 +++++++++++---------- man/ontario.Rd | 2 - 12 files changed, 96 insertions(+), 47 deletions(-)
Author: Søren Højsgaard
Diff between gRbase versions 1.0.1 dated 2009-02-26 and 1.1.0 dated 2009-04-26
Title: A package for graphical modelling in R
Description: The gRbase package provides certain general constructs
which are used by other graphical modelling packages. This
includes 1) the concept of gmData (graphical meta data), 2)
several graph algorithms 3) facilities for table operations, 4)
functions for testing for conditional independence. gRbase also
illustrates how hierarchical log-linear models (hllm) may be
implemented.
gRbase-1.0.1/gRbase/R/Graphsh-querygSH2.R |only
gRbase-1.0.1/gRbase/TODO |only
gRbase-1.0.1/gRbase/man/graph-operations1.Rd |only
gRbase-1.0.1/gRbase/man/graph-operations2.Rd |only
gRbase-1.0.1/gRbase/man/querygraph.Rd |only
gRbase-1.0.1/gRbase/man/triangulate.Rd |only
gRbase-1.1.0/gRbase/ChangeLog | 8
gRbase-1.1.0/gRbase/DESCRIPTION | 34 +-
gRbase-1.1.0/gRbase/INDEX | 1
gRbase-1.1.0/gRbase/NAMESPACE |only
gRbase-1.1.0/gRbase/R/GraphAlgo-mcs.R | 8
gRbase-1.1.0/gRbase/R/GraphAlgo-querygraph.R |only
gRbase-1.1.0/gRbase/R/GraphSH2.R | 6
gRbase-1.1.0/gRbase/R/dualRep.R | 2
gRbase-1.1.0/gRbase/R/formulae.R | 6
gRbase-1.1.0/gRbase/R/gmData.R | 4
gRbase-1.1.0/gRbase/R/processFormula.R | 2
gRbase-1.1.0/gRbase/R/setopsC.R | 107 +++++---
gRbase-1.1.0/gRbase/R/setopsR.R | 10
gRbase-1.1.0/gRbase/R/table-operations.R | 289 +++++++++++++++--------
gRbase-1.1.0/gRbase/R/utilities.R | 6
gRbase-1.1.0/gRbase/R/zzz.R | 4
gRbase-1.1.0/gRbase/inst/doc/gRbase.pdf |binary
gRbase-1.1.0/gRbase/man/GraphAlgo-operations1.Rd |only
gRbase-1.1.0/gRbase/man/GraphAlgo-operations2.Rd |only
gRbase-1.1.0/gRbase/man/GraphAlgo-querygraph.Rd |only
gRbase-1.1.0/gRbase/man/GraphAlgo-triangulate.Rd |only
gRbase-1.1.0/gRbase/man/gRbase-internal.Rd | 41 ---
gRbase-1.1.0/gRbase/man/gRbase-utilities.Rd | 24 -
gRbase-1.1.0/gRbase/man/removeRedundant.Rd |only
gRbase-1.1.0/gRbase/man/table-operations.Rd | 21 +
31 files changed, 333 insertions(+), 240 deletions(-)
Author: Søren Højsgaard
Diff between gRain versions 0.7.0 dated 2009-02-12 and 0.8.0 dated 2009-04-26
Title: Graphical Independence Networks
Description: A package for probability propagation in graphical
independence networks, also known as probabilistic expert
systems (which includes Bayesian networks as a special case).
gRain-0.7.0/gRain/R/compile-grain.R |only
gRain-0.7.0/gRain/R/cumcounts.R |only
gRain-0.7.0/gRain/R/grain-main.R |only
gRain-0.7.0/gRain/R/nodeNamesETC.R |only
gRain-0.7.0/gRain/R/querygm.R |only
gRain-0.7.0/gRain/inst/doc/R-current.lnk |only
gRain-0.7.0/gRain/man/propagate.compgrain.Rd |only
gRain-0.7.0/gRain/man/querygm.Rd |only
gRain-0.8.0/gRain/ChangeLog | 6
gRain-0.8.0/gRain/DESCRIPTION | 30 -
gRain-0.8.0/gRain/INDEX | 17
gRain-0.8.0/gRain/NAMESPACE | 81 ----
gRain-0.8.0/gRain/R/Finding.R | 14
gRain-0.8.0/gRain/R/Generics.R | 16
gRain-0.8.0/gRain/R/GraphAlgo-misc.R |only
gRain-0.8.0/gRain/R/SimulateArray.R | 20 -
gRain-0.8.0/gRain/R/asxxx.R | 30 -
gRain-0.8.0/gRain/R/compile-grain2.R |only
gRain-0.8.0/gRain/R/compileCPT.R |only
gRain-0.8.0/gRain/R/cptable-specialized.R |only
gRain-0.8.0/gRain/R/cptable.R | 337 ++---------------
gRain-0.8.0/gRain/R/display.R | 2
gRain-0.8.0/gRain/R/extractCPT.R |only
gRain-0.8.0/gRain/R/grain-main2.R |only
gRain-0.8.0/gRain/R/loadSaveHuginNet.R | 506 ++++++++++++++++++---------
gRain-0.8.0/gRain/R/methods.R | 17
gRain-0.8.0/gRain/R/potentialList.R | 98 ++---
gRain-0.8.0/gRain/R/propagate.R | 22 -
gRain-0.8.0/gRain/R/querygrain.R |only
gRain-0.8.0/gRain/R/simarray.R | 4
gRain-0.8.0/gRain/R/summary.R | 5
gRain-0.8.0/gRain/R/utilities.R | 154 --------
gRain-0.8.0/gRain/inst/doc/gRain-intro.Rnw | 2
gRain-0.8.0/gRain/inst/doc/gRain-intro.pdf |binary
gRain-0.8.0/gRain/man/andtable.Rd |only
gRain-0.8.0/gRain/man/compile.Rd |only
gRain-0.8.0/gRain/man/compile.grain.Rd | 9
gRain-0.8.0/gRain/man/compileCPT.Rd |only
gRain-0.8.0/gRain/man/cptable.Rd | 9
gRain-0.8.0/gRain/man/extractCPT.Rd |only
gRain-0.8.0/gRain/man/gRain-package.Rd | 8
gRain-0.8.0/gRain/man/grain.Rd | 24 -
gRain-0.8.0/gRain/man/internal-gRain.Rd | 1
gRain-0.8.0/gRain/man/loadSaveHuginNet.Rd | 21 -
gRain-0.8.0/gRain/man/propagate.grain.Rd |only
gRain-0.8.0/gRain/man/querygrain.Rd |only
gRain-0.8.0/gRain/man/simulate.Rd | 3
47 files changed, 562 insertions(+), 874 deletions(-)
Author: Patrick Brown
Title: Calculate SMR's from population and case data
Description: works with regular data set file and shape file.
Diff between diseasemapping versions 0.2 dated 2009-04-17 and 0.3 dated 2009-04-26
diseasemapping-0.2/diseasemapping/R/area.r |only diseasemapping-0.2/diseasemapping/man/area.Rd |only diseasemapping-0.3/diseasemapping/DESCRIPTION | 12 - diseasemapping-0.3/diseasemapping/R/computeArea.r |only diseasemapping-0.3/diseasemapping/R/formatCases.R | 1 diseasemapping-0.3/diseasemapping/R/formatPopulation.data.frame.R | 6 diseasemapping-0.3/diseasemapping/R/formatPopulation.list.R | 27 +-- diseasemapping-0.3/diseasemapping/R/getRates.R | 9 - diseasemapping-0.3/diseasemapping/R/getSMR.SpatialPolygonsDataFrame.R | 3 diseasemapping-0.3/diseasemapping/R/getSMR.data.frame.R | 38 ++--- diseasemapping-0.3/diseasemapping/R/getSMR.list.r | 73 ++++++---- diseasemapping-0.3/diseasemapping/R/mergeBugsData.R | 1 diseasemapping-0.3/diseasemapping/data/popdata.RData |binary diseasemapping-0.3/diseasemapping/man/computeArea.Rd |only diseasemapping-0.3/diseasemapping/man/diseasemapping-package.Rd | 18 ++ diseasemapping-0.3/diseasemapping/man/formatPopulation.Rd | 4 diseasemapping-0.3/diseasemapping/man/getSMR.Rd | 3 17 files changed, 122 insertions(+), 73 deletions(-)
More information about diseasemapping at CRAN
Permanent link
Author: John Fox
Title: R Commander Plug-in for the survival Package
Description: This package provides an R Commander plug-in for the
survival package, with dialogs for Cox models, parametric
survival regression models, estimation of survival curves, and
testing for differences in survival curves, along with
data-management facilities and a variety of tests, diagnostics
and graphs.
Diff between RcmdrPlugin.survival versions 0.7-2 dated 2009-04-03 and 0.7-3 dated 2009-04-26
DESCRIPTION | 11 +++++------ R/Survfit.R | 8 +++++--- inst/CHANGES | 4 ++++ man/RcmdrPlugin.survival-package.Rd | 4 ++-- 4 files changed, 16 insertions(+), 11 deletions(-)
More information about RcmdrPlugin.survival at CRAN
Permanent link
Author: Volodymyr Melnykov
Diff between MixSim versions 0.1-02 dated 2009-04-23 and 0.1-03 dated 2009-04-26
Title: Simulating Data to Study Performance of Clustering Algorithms.
Description: MixSim
DESCRIPTION | 9 ++++-----
fixed.txt | 4 ++--
log.txt | 5 ++++-
src/Makevars | 2 +-
4 files changed, 11 insertions(+), 9 deletions(-)
Author: Francois Husson, Julie Josse, Sebastien Le, Jeremy Mazet
Title: Factor Analysis and Data Mining with R
Description: an R package for exploratory data analysis
Diff between FactoMineR versions 1.10 dated 2008-09-16 and 1.12 dated 2009-04-26
FactoMineR-1.10/FactoMineR/R/afdm.R |only FactoMineR-1.12/FactoMineR/DESCRIPTION | 26 FactoMineR-1.12/FactoMineR/NAMESPACE | 2 FactoMineR-1.12/FactoMineR/R/AFDM.R |only FactoMineR-1.12/FactoMineR/R/CA.R | 10 FactoMineR-1.12/FactoMineR/R/DMFA.R | 2 FactoMineR-1.12/FactoMineR/R/GPA.R | 1941 ++++++++++------------- FactoMineR-1.12/FactoMineR/R/HCPC.R |only FactoMineR-1.12/FactoMineR/R/MCA.R | 307 ++- FactoMineR-1.12/FactoMineR/R/MFA.R | 12 FactoMineR-1.12/FactoMineR/R/PCA.R | 19 FactoMineR-1.12/FactoMineR/R/catdes.r | 30 FactoMineR-1.12/FactoMineR/R/coeffRV.R | 2 FactoMineR-1.12/FactoMineR/R/condes.r | 188 +- FactoMineR-1.12/FactoMineR/R/dimdesc.r | 47 FactoMineR-1.12/FactoMineR/R/plot.AFDM.R | 2 FactoMineR-1.12/FactoMineR/R/plot.CA.R | 7 FactoMineR-1.12/FactoMineR/R/plot.GPA.R | 7 FactoMineR-1.12/FactoMineR/R/plot.HCPC.R |only FactoMineR-1.12/FactoMineR/R/plot.MCA.R | 54 FactoMineR-1.12/FactoMineR/R/plot.MFA.R | 20 FactoMineR-1.12/FactoMineR/R/plot.PCA.R | 33 FactoMineR-1.12/FactoMineR/R/plot.catdes.R |only FactoMineR-1.12/FactoMineR/R/plotellipses.r |only FactoMineR-1.12/FactoMineR/R/print.CA.R | 8 FactoMineR-1.12/FactoMineR/R/print.MCA.R | 20 FactoMineR-1.12/FactoMineR/R/print.MFA.R | 6 FactoMineR-1.12/FactoMineR/R/print.PCA.R | 20 FactoMineR-1.12/FactoMineR/R/write.infile.R | 26 FactoMineR-1.12/FactoMineR/data/JO.rda |only FactoMineR-1.12/FactoMineR/data/decathlon.rda |binary FactoMineR-1.12/FactoMineR/data/poulet.rda |only FactoMineR-1.12/FactoMineR/man/AFDM.Rd | 11 FactoMineR-1.12/FactoMineR/man/CA.Rd | 10 FactoMineR-1.12/FactoMineR/man/HCPC.Rd |only FactoMineR-1.12/FactoMineR/man/JO.Rd |only FactoMineR-1.12/FactoMineR/man/MCA.Rd | 14 FactoMineR-1.12/FactoMineR/man/MFA.Rd | 4 FactoMineR-1.12/FactoMineR/man/catdes.Rd | 3 FactoMineR-1.12/FactoMineR/man/condes.Rd | 2 FactoMineR-1.12/FactoMineR/man/plot.DMFA.Rd | 2 FactoMineR-1.12/FactoMineR/man/plot.HCPC.Rd |only FactoMineR-1.12/FactoMineR/man/plot.MCA.Rd | 13 FactoMineR-1.12/FactoMineR/man/plot.MFA.Rd | 3 FactoMineR-1.12/FactoMineR/man/plot.PCA.Rd | 4 FactoMineR-1.12/FactoMineR/man/plot.catdes.Rd |only FactoMineR-1.12/FactoMineR/man/plotellipses.Rd |only FactoMineR-1.12/FactoMineR/man/poison.Rd | 3 FactoMineR-1.12/FactoMineR/man/poison.text.Rd | 3 FactoMineR-1.12/FactoMineR/man/poulet.Rd |only FactoMineR-1.12/FactoMineR/man/svd.triplet.Rd | 4 FactoMineR-1.12/FactoMineR/man/tab.disjonctif.Rd | 2 FactoMineR-1.12/FactoMineR/man/tea.Rd | 4 FactoMineR-1.12/FactoMineR/man/write.infile.Rd | 3 54 files changed, 1412 insertions(+), 1462 deletions(-)