Author: Edzer J. Pebesma
Diff between sp versions 0.9-34 dated 2009-03-31 and 0.9-36 dated 2009-04-29
Title: classes and methods for spatial data
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location
information resides, for 2D or 3D data. Utility functions are
provided, e.g. for plotting data as maps, spatial selection, as
well as methods for retrieving coordinates, for subsetting,
print, summary, etc.
ChangeLog | 23
DESCRIPTION | 8
NAMESPACE | 4
R/SpatialGridDataFrame-methods.R | 7
R/SpatialLinesDataFrame-methods.R | 4
R/SpatialPolygonsDataFrame-methods.R | 4
R/spdists.R | 4
inst/ChangeLog | 23
inst/doc/sp.pdf | 1014 ++++++++++++++++------------------
man/SpatialGridDataFrame-class.Rd | 1
man/SpatialLinesDataFrame-class.Rd | 1
man/SpatialPixelsDataFrame-class.Rd | 1
man/SpatialPolygonsDataFrame-class.Rd | 1
13 files changed, 575 insertions(+), 520 deletions(-)
Author: Yaqian Guo
Diff between rda versions 1.0.1 dated 2009-03-01 and 1.0.2 dated 2009-04-29
Title: Shrunken Centroids Regularized Discriminant Analysis
Description: Shrunken Centroids Regularized Discriminant Analysis for
the classification purpose in high dimensional data.
DESCRIPTION | 20 +++++++++++---------
man/rda.plotcv.Rd | 1 -
2 files changed, 11 insertions(+), 10 deletions(-)
Author: Andrew Gelman
Diff between mi versions 0.06-5 dated 2009-04-23 and 0.07-1 dated 2009-04-29
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
mi-0.06-5/mi/R/mi.dichotomous.R |only
mi-0.06-5/mi/man/mi.dichotomous.Rd |only
mi-0.06-5/mi/man/prior.control.Rd |only
mi-0.07-1/mi/CHANGELOG | 11 +++++++-
mi-0.07-1/mi/DESCRIPTION | 8 +++---
mi-0.07-1/mi/NAMESPACE | 8 +++---
mi-0.07-1/mi/R/AllClass.R | 2 -
mi-0.07-1/mi/R/imputation.models.R | 8 +++---
mi-0.07-1/mi/R/mi.R | 46 ++++++++++++++++++-------------------
mi-0.07-1/mi/R/mi.binary.R |only
mi-0.07-1/mi/R/mi.hist.R | 6 ++--
mi-0.07-1/mi/R/mi.info.R | 41 ++++++++++++++++----------------
mi-0.07-1/mi/R/mi.preprocess.R | 18 +++++++-------
mi-0.07-1/mi/R/plot.R | 25 +++++++++++---------
mi-0.07-1/mi/R/print.R | 4 +--
mi-0.07-1/mi/R/resid.R | 4 +--
mi-0.07-1/mi/R/typecast.R | 4 +--
mi-0.07-1/mi/man/CHAIN.Rd | 2 -
mi-0.07-1/mi/man/mi.Rd | 24 +++++++++----------
mi-0.07-1/mi/man/mi.binary.Rd |only
mi-0.07-1/mi/man/mi.categorical.Rd | 15 ++++++------
mi-0.07-1/mi/man/mi.completed.Rd | 2 -
mi-0.07-1/mi/man/mi.fixed.Rd | 4 +--
mi-0.07-1/mi/man/mi.hist.Rd | 14 +++++------
mi-0.07-1/mi/man/mi.info.Rd | 2 -
mi-0.07-1/mi/man/mi.info.update.Rd | 4 +--
mi-0.07-1/mi/man/mi.method.Rd | 3 +-
mi-0.07-1/mi/man/mi.polr.Rd | 1
mi-0.07-1/mi/man/mi.pooled.Rd | 2 -
mi-0.07-1/mi/man/mi.preprocess.Rd | 6 ++--
mi-0.07-1/mi/man/noise.control.Rd |only
mi-0.07-1/mi/man/plot.mi.Rd | 20 ++++++++++------
mi-0.07-1/mi/man/type.models.Rd | 4 +--
mi-0.07-1/mi/man/typecast.Rd | 4 +--
34 files changed, 156 insertions(+), 136 deletions(-)
Author: Chris Fraley and Adrian Raftery
Title: Model-Based Clustering / Normal Mixture Modeling
Description: Model-based clustering and normal mixture modeling
including Bayesian regularization
Diff between mclust versions 3.1-10.3 dated 2009-03-08 and 3.2 dated 2009-04-29
CHANGELOG | 2 ++ DESCRIPTION | 26 ++++++++++++++------------ R/mclust.R | 3 ++- src/Makevars | 3 ++- 4 files changed, 20 insertions(+), 14 deletions(-)
Author: Heather Turner and David Firth
Title: Generalized Nonlinear Models
Description: Functions to specify and fit generalized nonlinear models,
including models with multiplicative interaction terms such as
the UNIDIFF model from sociology and the AMMI model from crop
science, and many others. Over-parameterized representations
of models are used throughout; functions are provided for
inference on estimable parameter combinations, as well as
standard methods for diagnostics etc.
Diff between gnm versions 0.9-8 dated 2009-02-25 and 0.9-9 dated 2009-04-29
DESCRIPTION | 16 R/gnm.R | 6 R/gnmFit.R | 62 R/gnmTerms.R | 9 R/gnmTools.R | 2 R/nonlinTerms.R | 7 inst/NEWS | 9 inst/doc/gnmOverview.Rnw | 31 inst/doc/gnmOverview.pdf | 6135 +++++++++++++++++++++++------------------------ man/House2001.Rd | 8 man/Mult.Rd | 2 man/MultHomog.Rd | 7 man/backPain.Rd | 186 - man/friend.Rd | 75 man/gnm.Rd | 12 man/instances.Rd | 2 man/nonlin.function.Rd | 7 src/gnm.c | 58 18 files changed, 3399 insertions(+), 3235 deletions(-)
Author: Andrew Gelman
Diff between arm versions 1.2-8 dated 2009-04-01 and 1.2-9 dated 2009-04-29
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Description: R functions for processing lm, glm, mer and polr outputs.
CHANGELOG | 8 ++++++++
DESCRIPTION | 8 ++++----
R/display.R | 6 +++---
R/matching.R | 2 +-
4 files changed, 16 insertions(+), 8 deletions(-)
Author: Douglas Bates
Diff between Matrix versions 0.999375-25 dated 2009-04-19 and 0.999375-26 dated 2009-04-29
Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
ChangeLog | 13 +
DESCRIPTION | 8
R/sparseMatrix.R | 2
R/zzz.R | 9
inst/doc/Comparisons.pdf |binary
inst/doc/DSC2009_abstract.pdf |only
inst/doc/DSC2009_abstract.tex |only
inst/doc/Design-issues.pdf |binary
inst/doc/Intro2Matrix.pdf | 427 ++++++++++++++++++++----------------------
inst/doc/Introduction.pdf |binary
inst/doc/sparseModels.pdf |binary
src/Mutils.c | 102 ++++++++++
src/Mutils.h | 65 ------
src/Syms.h | 6
src/init.c | 16 +
tests/Simple.R | 16 +
16 files changed, 377 insertions(+), 287 deletions(-)
Author: Frank E Harrell Jr
Diff between Hmisc versions 3.5-2 dated 2009-01-26 and 3.6-0 dated 2009-04-29
Title: Harrell Miscellaneous
Description: The Hmisc library contains many functions useful for data
analysis, high-level graphics, utility operations, functions
for computing sample size and power, importing datasets,
imputing missing values, advanced table making, variable
clustering, character string manipulation, conversion of S
objects to LaTeX code, and recoding variables. Please submit
bug reports to 'http://biostat.mc.vanderbilt.edu/trac/Hmisc'.
Hmisc-3.5-2/Hmisc/INDEX |only
Hmisc-3.5-2/Hmisc/src/ratfor/cidxcn.s |only
Hmisc-3.5-2/Hmisc/src/ratfor/cidxcp.s |only
Hmisc-3.5-2/Hmisc/src/ratfor/hoeffd.s |only
Hmisc-3.5-2/Hmisc/src/ratfor/jacklins.s |only
Hmisc-3.5-2/Hmisc/src/ratfor/rcorr.s |only
Hmisc-3.5-2/Hmisc/src/ratfor/wclosest.s |only
Hmisc-3.6-0/Hmisc/DESCRIPTION | 35 +++---
Hmisc-3.6-0/Hmisc/R/Misc.s | 10 -
Hmisc-3.6-0/Hmisc/R/areg.s | 6 -
Hmisc-3.6-0/Hmisc/R/aregImpute.s | 14 ++
Hmisc-3.6-0/Hmisc/R/biVar.s | 43 +++++++
Hmisc-3.6-0/Hmisc/R/bootkm.s | 5
Hmisc-3.6-0/Hmisc/R/errbar.s | 81 +++++++++++---
Hmisc-3.6-0/Hmisc/R/impute.s | 2
Hmisc-3.6-0/Hmisc/R/latex.s | 152 ++++++++++++++++-----------
Hmisc-3.6-0/Hmisc/R/rm.boot.s | 2
Hmisc-3.6-0/Hmisc/R/sas.get.s | 77 +++++++------
Hmisc-3.6-0/Hmisc/R/summary.formula.s | 5
Hmisc-3.6-0/Hmisc/R/survfit.km.s |only
Hmisc-3.6-0/Hmisc/man/Hmisc-internal.Rd | 1
Hmisc-3.6-0/Hmisc/man/Overview.Rd | 4
Hmisc-3.6-0/Hmisc/man/aregImpute.Rd | 11 +
Hmisc-3.6-0/Hmisc/man/errbar.Rd | 163 +++++++++++++++++------------
Hmisc-3.6-0/Hmisc/man/event.history.Rd | 2
Hmisc-3.6-0/Hmisc/man/format.df.Rd | 62 ++++++-----
Hmisc-3.6-0/Hmisc/man/latex.Rd | 6 -
Hmisc-3.6-0/Hmisc/man/plotCorrPrecision.Rd | 7 -
Hmisc-3.6-0/Hmisc/man/rcorr.cens.Rd | 56 ++++++++-
Hmisc-3.6-0/Hmisc/man/string.break.line.Rd | 12 --
Hmisc-3.6-0/Hmisc/man/unix/sas.get.Rd | 10 -
Hmisc-3.6-0/Hmisc/man/windows/sas.get.Rd | 11 -
32 files changed, 504 insertions(+), 273 deletions(-)
Author: Ingo Feinerer, with contributions from Christian Buchta, Kurt
Hornik, David Meyer, and Fridolin Wild
Title: Text Mining Package
Description: A framework for text mining applications within R.
Diff between tm versions 0.3-3 dated 2008-12-21 and 0.3-4 dated 2009-04-29
tm-0.3-3/tm/R/termdocmatrix.R |only tm-0.3-3/tm/man/CSVSource-class.Rd |only tm-0.3-3/tm/man/CSVSource.Rd |only tm-0.3-3/tm/man/ReutersSource-class.Rd |only tm-0.3-3/tm/man/TermDocMatrix-class.Rd |only tm-0.3-3/tm/man/colnames.Rd |only tm-0.3-3/tm/man/dim.Rd |only tm-0.3-3/tm/man/dimnames.Rd |only tm-0.3-3/tm/man/inspect-methods.Rd |only tm-0.3-3/tm/man/ncol.Rd |only tm-0.3-3/tm/man/nrow.Rd |only tm-0.3-3/tm/man/rownames.Rd |only tm-0.3-3/tm/man/weightLogical.Rd |only tm-0.3-4/tm/DESCRIPTION | 18 + tm-0.3-4/tm/NAMESPACE | 98 ++++++---- tm-0.3-4/tm/R/AAA.R | 28 --- tm-0.3-4/tm/R/aobjects.R | 155 ++--------------- tm-0.3-4/tm/R/cluster.R | 24 ++ tm-0.3-4/tm/R/complete.R | 2 tm-0.3-4/tm/R/dictionary.R | 16 - tm-0.3-4/tm/R/distmeasure.R | 27 +- tm-0.3-4/tm/R/matrix.R |only tm-0.3-4/tm/R/meta.R | 8 tm-0.3-4/tm/R/plot.R | 20 +- tm-0.3-4/tm/R/preprocess.R | 8 tm-0.3-4/tm/R/reader.R | 282 +++++++++++++------------------ tm-0.3-4/tm/R/source.R | 212 +++++++++-------------- tm-0.3-4/tm/R/sparse.R |only tm-0.3-4/tm/R/textdoccol.R | 144 ++++++++------- tm-0.3-4/tm/R/textrepo.R | 6 tm-0.3-4/tm/R/transform.R | 8 tm-0.3-4/tm/R/utils.R |only tm-0.3-4/tm/R/weight.R | 48 ++++- tm-0.3-4/tm/inst/NEWS | 52 +++++ tm-0.3-4/tm/inst/doc/extensions.Rnw |only tm-0.3-4/tm/inst/doc/extensions.pdf |only tm-0.3-4/tm/inst/doc/references.bib |only tm-0.3-4/tm/inst/doc/tm.Rnw | 102 +++++------ tm-0.3-4/tm/inst/doc/tm.pdf |binary tm-0.3-4/tm/inst/texts/custom.xml |only tm-0.3-4/tm/man/DataframeSource-class.Rd | 16 - tm-0.3-4/tm/man/DataframeSource.Rd | 1 tm-0.3-4/tm/man/Dictionary.Rd | 15 - tm-0.3-4/tm/man/DirSource-class.Rd | 16 - tm-0.3-4/tm/man/DirSource.Rd | 10 - tm-0.3-4/tm/man/GmaneSource.Rd | 2 tm-0.3-4/tm/man/ReutersSource.Rd | 2 tm-0.3-4/tm/man/Source-class.Rd | 30 ++- tm-0.3-4/tm/man/TermDocMatrix.Rd | 40 ++-- tm-0.3-4/tm/man/TextDocCol.Rd | 2 tm-0.3-4/tm/man/TextDocument-class.Rd | 4 tm-0.3-4/tm/man/TextRepository.Rd | 2 tm-0.3-4/tm/man/URISource-class.Rd | 16 - tm-0.3-4/tm/man/URISource.Rd | 2 tm-0.3-4/tm/man/VectorSource-class.Rd | 16 - tm-0.3-4/tm/man/XMLSource-class.Rd |only tm-0.3-4/tm/man/XMLSource.Rd |only tm-0.3-4/tm/man/dissimilarity-methods.Rd | 45 ++-- tm-0.3-4/tm/man/eoi-methods.Rd | 6 tm-0.3-4/tm/man/findAssocs.Rd | 32 +-- tm-0.3-4/tm/man/findFreqTerms.Rd | 37 ++-- tm-0.3-4/tm/man/getElem-methods.Rd | 4 tm-0.3-4/tm/man/inspect.Rd |only tm-0.3-4/tm/man/names.Rd |only tm-0.3-4/tm/man/number.Rd |only tm-0.3-4/tm/man/pGetElem-methods.Rd |only tm-0.3-4/tm/man/plot.Rd | 13 - tm-0.3-4/tm/man/readDOC.Rd | 11 - tm-0.3-4/tm/man/readGmane.Rd | 28 --- tm-0.3-4/tm/man/readNewsgroup.Rd | 13 - tm-0.3-4/tm/man/readPDF.Rd | 15 - tm-0.3-4/tm/man/readRCV1.Rd | 27 -- tm-0.3-4/tm/man/readReut21578XML.Rd | 27 -- tm-0.3-4/tm/man/readTabular.Rd |only tm-0.3-4/tm/man/readXML.Rd |only tm-0.3-4/tm/man/removeSparseTerms.Rd | 34 +-- tm-0.3-4/tm/man/show-methods.Rd | 3 tm-0.3-4/tm/man/subset-methods.Rd | 8 tm-0.3-4/tm/man/summary-methods.Rd | 2 tm-0.3-4/tm/man/termFreq.Rd | 6 tm-0.3-4/tm/man/tmReduce.Rd |only tm-0.3-4/tm/man/weightTf.Rd | 5 82 files changed, 827 insertions(+), 921 deletions(-)
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams and Chris Keefer
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.10 dated 2009-03-27 and 4.11 dated 2009-04-29
DESCRIPTION | 14 NAMESPACE | 64 R/classDist.R |only R/createGrid.R | 8 R/createModel.R | 97 R/knnreg.R |only R/misc.R | 71 R/predictionFunction.R | 18 R/predictors.R | 87 R/probFunction.R | 14 R/rfe.R |only R/selection.R | 9 inst/CHANGES | 19 inst/doc/caretMisc.Rnw | 62 inst/doc/caretMisc.pdf | 5700 +++++++++++++++++++++++++++++++++----------- inst/doc/caretMisc.tex |only inst/doc/caretSelection.Rnw |only inst/doc/caretSelection.pdf |only inst/doc/caretSelection.tex |only inst/doc/caretTrain.Rnw | 99 inst/doc/caretTrain.pdf |binary inst/doc/caretTrain.tex |only inst/doc/caretVarImp.Rnw | 15 inst/doc/caretVarImp.pdf | 1091 ++++---- inst/doc/caretVarImp.tex |only inst/doc/rfeExamples.R |only man/classDist.Rd |only man/knnreg.Rd |only man/lattice.rfe.Rd |only man/predict.knnreg.Rd |only man/predictors.Rd | 3 man/rfe.Rd |only man/rfeControl.Rd |only man/rfeFunctions.Rd |only man/train.Rd | 37 man/varImp.Rd | 6 src/caret.c | 119 37 files changed, 5542 insertions(+), 1991 deletions(-)
Author: Kurt Hornik
Title: Snowball Stemmers
Description: Snowball stemmers.
Diff between Snowball versions 0.0-3 dated 2007-09-11 and 0.0-4 dated 2009-04-29
Snowball-0.0-3/Snowball/Work |only Snowball-0.0-4/Snowball/DESCRIPTION | 10 ++++++---- Snowball-0.0-4/Snowball/R/zzz.R | 6 +++--- 3 files changed, 9 insertions(+), 7 deletions(-)
Author: Kurt Hornik, with contributions from Christian Buchta, Torsten
Hothorn, Alexandros Karatzoglou, David Meyer, and Achim Zeileis
Title: R/Weka interface
Description: An R interface to Weka (Version 3.6.0). Weka is a
collection of machine learning algorithms for data mining tasks
written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Both the R interface and Weka itself are
contained in the RWeka package. For more information on Weka
see http://www.cs.waikato.ac.nz/~ml/weka/.
Diff between RWeka versions 0.3-16 dated 2009-02-19 and 0.3-17 dated 2009-04-29
CHANGELOG | 4 ++++ COPYRIGHTS | 15 +++++---------- DESCRIPTION | 31 ++++++++++++++++--------------- NAMESPACE | 16 ++++++++++------ R/onLoad.R | 2 -- inst/CITATION | 2 +- inst/po/en@quot/LC_MESSAGES/R-RWeka.mo |binary po/R-RWeka.pot | 5 ++++- po/R-en@quot.po | 7 +++++-- tests/data_exchange.R | 2 +- tests/data_exchange.Rout.save | 8 +++----- 11 files changed, 49 insertions(+), 43 deletions(-)