Author: Nicolas Turenne
Diff between svcR versions 1.4.1 dated 2008-07-14 and 1.4.2 dated 2009-05-06
Title: svcR package
Description: svcR implements a support vector machine technique for
clustering It includes choice between three kinds of kernel.
Original cluster labeling and export of clusters. Format of
data require 3 files: matrix, attributes, variables.
svcR-1.4.1/svcR/Makedeps |only
svcR-1.4.1/svcR/man/svcR.Rd |only
svcR-1.4.1/svcR/rcmd |only
svcR-1.4.2/svcR/COPYING |only
svcR-1.4.2/svcR/COPYRIGHTS |only
svcR-1.4.2/svcR/DESCRIPTION | 26
svcR-1.4.2/svcR/NAMESPACE | 41
svcR-1.4.2/svcR/R/classes.R |only
svcR-1.4.2/svcR/R/display.R |only
svcR-1.4.2/svcR/R/eval.R |only
svcR-1.4.2/svcR/R/kern.R |only
svcR-1.4.2/svcR/R/labelling.R |only
svcR-1.4.2/svcR/R/model.R |only
svcR-1.4.2/svcR/R/svcR.R | 2905 +++-----------------------
svcR-1.4.2/svcR/man/ClusterEval-class.Rd |only
svcR-1.4.2/svcR/man/ClusterEval.Rd |only
svcR-1.4.2/svcR/man/Display.Rd |only
svcR-1.4.2/svcR/man/Labelling-class.Rd |only
svcR-1.4.2/svcR/man/Labelling.Rd |only
svcR-1.4.2/svcR/man/ModelSV-class.Rd |only
svcR-1.4.2/svcR/man/ModelSV.Rd |only
svcR-1.4.2/svcR/man/findModelCluster-class.Rd |only
svcR-1.4.2/svcR/man/findModelCluster.Rd |only
svcR-1.4.2/svcR/man/kernelMatrix-class.Rd |only
svcR-1.4.2/svcR/man/kernelMatrix.Rd |only
svcR-1.4.2/svcR/src/svcR.c | 117 -
svcR-1.4.2/svcR/src/svcR.h | 1
27 files changed, 574 insertions(+), 2516 deletions(-)
Author: Christian Hennig
Diff between prabclus versions 2.1-2 dated 2008-09-21 and 2.1-3 dated 2009-05-06
Title: Functions for clustering of presence-absence and abundance data
Description: Distance-based parametric bootstrap tests for clustering,
mainly intended for presence-absence data and abundance data
(clustering of species distribution ranges). Jaccard,
Kulczynski, quantitative Kulczynski and geco distance measures,
clustering of presence-absence and abundance data, and nearest
neighbor based noise detection (R port of Byers and Raftery's
(1998) "NNclean"). Main functions are prabtest, abundtest (for
testing), prabclust (for clustering), prabinit (for preparing
the data) and NNclean (for noise detection). The help-pages for
prabtest, abundtest and prabclust contain simple standard
executions. Note that the use of the package mclust (called by
function prabclust) is protected by a special license, see
http://www.stat.washington.edu/mclust/license.txt, particularly
point 6.
DESCRIPTION | 40 +++++++++++++++++++++-------------------
DESCRIPTIONbackup |only
R/NNclean.R | 20 +++++++++++++++-----
man/abundtest.Rd | 2 +-
man/autoconst.Rd | 2 +-
man/conregmat.Rd | 5 -----
man/homogen.test.Rd | 2 --
man/incmatrix.Rd | 2 --
man/jaccard.Rd | 2 --
man/kulczynski.Rd | 2 --
man/prabtest.Rd | 2 +-
man/siskiyou.Rd | 3 ++-
tests/examples.R | 16 ++++++++--------
13 files changed, 49 insertions(+), 49 deletions(-)
Author: Christian Hennig
Diff between fpc versions 1.2-3 dated 2007-06-14 and 1.2-4 dated 2009-05-06
Title: Fixed point clusters, clusterwise regression and discriminant
plots
Description: Fuzzy and crisp fixed point cluster analysis based on
Mahalanobis distance and linear regression fixed point
clusters. Semi-explorative, semi-model-based clustering
methods, operating on n*p data, do not need prespecification of
number of clusters, produce overlapping clusters. Symmetric and
asymmetric discriminant projections separate groups optimally,
used to visualize the separation of groupings, visual cluster
validation. Clusterwise linear regression by normal mixture
modeling. Cluster validation statistics for distance based
clustering including corrected Rand index. Clusterwise cluster
stability assessment. DBSCAN clustering. Interface functions
for many clustering methods implemented in R. Note that the use
of the package mclust (called by function prabclust) is
protected by a special license, see
http://www.stat.washington.edu/mclust/license.txt, particularly
point 6.
DESCRIPTION | 43 ++---
R/clusterboot.R | 438 ++++++++++++++++++++++++++++++++++-----------------
R/discrproj.R | 129 +++++++++++----
R/fixreg.R | 4
R/rFace.R | 199 +++++++++++++----------
man/cluster.stats.Rd | 39 +++-
man/clusterboot.Rd | 36 ++--
man/discrproj.Rd | 11 +
man/kmeansCBI.Rd | 66 +++----
man/plotcluster.Rd | 37 +++-
10 files changed, 662 insertions(+), 340 deletions(-)
Author: P. Neytchev, P. Filzmoser, R. Patnaik, A. Eisl and R. Boubela
Title: Trimmed Maximum Likelihood Estimation
Description: TLE implements a general framework for robust fitting of
finite mixture models. Parameter estimation is performed using
the EM algorithm.
Diff between tlemix versions 0.0.4 dated 2009-03-04 and 0.0.5 dated 2009-05-06
tlemix-0.0.4/tlemix/R/classes.R |only tlemix-0.0.5/tlemix/DESCRIPTION | 16 tlemix-0.0.5/tlemix/R/FLXglm.Estimate.R | 2 tlemix-0.0.5/tlemix/R/FLXmclust.Estimate.R | 2 tlemix-0.0.5/tlemix/inst/doc/references.bib | 48 tlemix-0.0.5/tlemix/inst/doc/tlemix-intro.Rnw | 98 - tlemix-0.0.5/tlemix/inst/doc/tlemix-intro.pdf | 2089 ++++++++++++++------------ tlemix-0.0.5/tlemix/man/FLXmclust.Estimate.Rd | 2 tlemix-0.0.5/tlemix/man/McLachlan150.Rd | 2 tlemix-0.0.5/tlemix/man/dPois.Rd | 2 tlemix-0.0.5/tlemix/man/flexmix.Estimate.Rd | 2 tlemix-0.0.5/tlemix/man/gaussData.Rd | 2 12 files changed, 1265 insertions(+), 1000 deletions(-)
Author: Theresa Scharl, Ingo Voglhuber, Friedrich Leisch
Title: Graphical Cluster Explorer
Description: Visualize cluster results and investigate additional
properties of clusters using interactive neighbourhood graphs.
By clicking on the node representing the cluster, information
about the cluster is provided using additional graphics or
summary statistics. For microarray data, tables with links to
genetic databases like gene ontolgy can be created for each
cluster.
Diff between gcExplorer versions 0.9-0 dated 2009-01-13 and 0.9-1 dated 2009-05-06
DESCRIPTION | 19 ++++++++++-------- NAMESPACE | 19 +++++++++++++++--- R/Group2Cluster.R |only R/clusterPlot.R | 26 ++++++++++++++++++++---- R/comp_test.R |only R/edgeTest.R |only R/gcExplorer.R | 15 +++++++------- R/gcModify.R |only R/gcProfile.R | 51 +++++++++++++++++++++++++++---------------------- R/go.details.R | 6 +++-- R/legend.size.R | 8 ++++--- R/write.htmltable.R | 2 - data/comp19.rda |only data/oxygen.rda |only data/ps19.rda |only data/sigma.rda |only inst |only man/Group2Cluster.Rd |only man/clnorm.Rd | 10 ++++----- man/clusterPlot.Rd | 9 +++++--- man/comp_test.Rd |only man/edgeTest.Rd |only man/fitsod.Rd | 4 +-- man/gcExplorer.Rd | 25 ++++++++++++++---------- man/gcModify.Rd |only man/gcOffline.Rd | 6 ++--- man/gcProfile.Rd | 2 - man/gcTable.Rd | 6 ++--- man/go.details.Rd | 13 ++++++------ man/jkdist.Rd | 2 - man/node.tight.Rd | 6 ++--- man/oxygen.Rd |only man/pattern.Rd | 2 - man/ps19.Rd |only man/sigma.Rd |only man/write.htmltable.Rd | 4 +-- 36 files changed, 144 insertions(+), 91 deletions(-)
Author: Carsten F. Dormann and Bernd Gruber, with additional code from
Jochen Fruend, also based on C-code developed by Nils Bluethgen
and by Miguel Rodriguez-Girones.
Title: Visualising bipartite networks and calculating some ecological
indices.
Description: Bipartite provides functions to viualise webs and
calculate a series of indices commonly used to describe pattern
in ecological webs. It focusses on webs consisting of only two
trophic levels, e.g. pollination webs or predator-prey-webs.
Visualisation is important to get an idea of what we are
actually looking at, while the indices summarise different
aspects of the webs topology.
Diff between bipartite versions 0.90 dated 2009-03-24 and 0.91 dated 2009-05-06
bipartite-0.90/bipartite/R/compart.r |only bipartite-0.90/bipartite/R/nestedness.corso.r |only bipartite-0.90/bipartite/man/discrepancy.rd |only bipartite-0.90/bipartite/man/nestedness.corso.Rd |only bipartite-0.91/bipartite/DESCRIPTION | 10 +++---- bipartite-0.91/bipartite/Jochentest.txt |only bipartite-0.91/bipartite/R/compart.R |only bipartite-0.91/bipartite/R/networklevel.R | 31 ++++++++++++++-------- bipartite-0.91/bipartite/R/plotweb.R | 10 ++----- bipartite-0.91/bipartite/R/robustness.r |only bipartite-0.91/bipartite/R/second.extinct.R | 25 ++++++++++------- bipartite-0.91/bipartite/R/wine.r |only bipartite-0.91/bipartite/Wishlist.txt | 8 ----- bipartite-0.91/bipartite/data/ollerton2003.rda |only bipartite-0.91/bipartite/man/bipartite-package.Rd | 15 +++++++--- bipartite-0.91/bipartite/man/discrepancy.Rd |only bipartite-0.91/bipartite/man/nestedness.Rd | 2 - bipartite-0.91/bipartite/man/networklevel.Rd | 12 ++++---- bipartite-0.91/bipartite/man/ollerton2003.Rd |only bipartite-0.91/bipartite/man/robustness.rd |only bipartite-0.91/bipartite/man/vazquez.example.rd | 22 +++++++-------- bipartite-0.91/bipartite/man/wine.rd |only bipartite-0.91/bipartite/vazquez_et_al_ms.pdf |only 23 files changed, 75 insertions(+), 60 deletions(-)
Author: Jose L. Izquierdo
Diff between Metabonomic versions 3.1.3 dated 2009-04-16 and 3.1.3.2 dated 2009-05-06
Title: GUI for Metabonomic Analysis
Description: Graphical User Interface for the Metabonomic Analysis
(Baseline, Normalization, Peak Detection, PCA, PLS, Nearest
Neigbourgt, Neural Network) developed to make easy this data
analysis.
Metabonomic-3.1.3.2/Metabonomic/DESCRIPTION | 10 +-
Metabonomic-3.1.3.2/Metabonomic/R/Baseline.Correction.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Import.data.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Manual.cut.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Aligm.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.B.STAT.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Baseline.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Binning.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Checkbox1.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.KNN.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.LDA.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.LDA.multi.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.LDA.multi2.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Load.Data.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Metabolites.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.NN1.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.NN2.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Norm.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Order.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Outliers.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.PCA.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.PLS1.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.PLS3D.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.RadioBox1.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.RadioBox2.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Save.Data.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Selection.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Show.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.delete.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.modalDialog.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.modalDialog2.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.modalDialog3.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.modalDialog4.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.model.1.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.peak.detection.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.redo.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.spectrum.2.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.spectrum.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.undo.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Metabonomic.R | 62 +++++++++-------
Metabonomic-3.1.3.2/Metabonomic/R/Phase.correction.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Require.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/TABLE.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Try.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/manual.model.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/showData2.R | 2
Metabonomic-3.1.3.2/Metabonomic/inst/42.GIF |only
Metabonomic-3.1.3.2/Metabonomic/inst/43.GIF |only
Metabonomic-3.1.3.2/Metabonomic/inst/44.GIF |only
Metabonomic-3.1.3.2/Metabonomic/inst/493.GIF |only
Metabonomic-3.1.3.2/Metabonomic/inst/51.gif |only
Metabonomic-3.1.3.2/Metabonomic/inst/52.GIF |only
Metabonomic-3.1.3.2/Metabonomic/inst/62.GIF |only
Metabonomic-3.1.3.2/Metabonomic/inst/726.GIF |only
Metabonomic-3.1.3.2/Metabonomic/inst/Thumbs.db |binary
Metabonomic-3.1.3/Metabonomic/inst/42.bmp |only
Metabonomic-3.1.3/Metabonomic/inst/43.bmp |only
Metabonomic-3.1.3/Metabonomic/inst/44.bmp |only
Metabonomic-3.1.3/Metabonomic/inst/493.bmp |only
Metabonomic-3.1.3/Metabonomic/inst/51.bmp |only
Metabonomic-3.1.3/Metabonomic/inst/52.bmp |only
Metabonomic-3.1.3/Metabonomic/inst/62.bmp |only
Metabonomic-3.1.3/Metabonomic/inst/726.bmp |only
63 files changed, 85 insertions(+), 75 deletions(-)
Author: R port by Douglas Bates
Diff between EngrExpt versions 0.1-5 dated 2009-04-15 and 0.1-6 dated 2009-05-06
Title: Data sets from "Introductory Statistics for Engineering
Experimentation"
Description: Datasets from Nelson, Coffin and Copeland "Introductory
Statistics for Engineering Experimentation" (Elsevier, 2003)
with sample code.
DESCRIPTION | 12 +++++++-----
data/bright.rda |binary
data/deink2.rda |binary
data/moisture.rda |binary
data/mw.rda |binary
data/separate.rda |binary
data/temprate.rda |binary
data/tpaste.rda |binary
man/bright.Rd | 11 ++++++-----
man/moisture.Rd | 14 +++++++++-----
man/sarea.Rd | 1 -
man/tpaste.Rd | 19 +++++++++++++++----
man/yield.Rd | 5 +++--
13 files changed, 40 insertions(+), 22 deletions(-)
Author: Gordon Smyth with contributions from Yifang Hu and Peter Dunn
Title: Statistical Modeling
Description: Various statistical modeling functions including growth
curve comparisons, limiting dilution analysis, mixed linear
models, heteroscedastic regression, Tweedie family generalized
linear models, the inverse-Gaussian distribution and Gauss
quadrature.
Diff between statmod versions 1.3.8 dated 2008-11-19 and 1.4.0 dated 2009-05-06
DESCRIPTION | 30 +++-- R/glmscoretest.R |only R/limdil.R | 231 +++++++++++++++++++++++++++++++++++------- inst/doc/changelog.txt | 21 +++ man/glmscoretest.Rd |only man/growthcurve.Rd | 6 + man/invgauss.Rd | 2 man/limdil.Rd | 26 +++- man/plot.limdil.Rd |only man/remlscor.Rd | 4 man/remlscorgamma.Rd | 4 tests/statmod-Tests.R | 95 ----------------- tests/statmod-Tests.Rout.save | 224 ---------------------------------------- 13 files changed, 265 insertions(+), 378 deletions(-)
Author: Russell V. Lenth
Title: Response-surface analysis
Description: Provides functions to generate response-surface designs,
fit first- and second-order response-surface models, make
contour plots, obtain the path of steepest ascent, and do
canonical analysis.
Diff between rsm versions 1.11 dated 2009-03-08 and 1.12 dated 2009-05-06
DESCRIPTION | 31 ++++++++++++++++--------------- inst/CITATION | 10 ++++++---- inst/NEWS | 4 ++++ inst/doc/rsm.pdf |binary 4 files changed, 26 insertions(+), 19 deletions(-)
Author: Devin S. Johnson
Title: Fit continuous-time correlated random walk models for animal
movement data
Description: The (C)orrelated (RA)ndom (W)alk (L)ibrary of R functions
was designed for fitting continuous-time correlated random walk
(CTCRW) models with time indexed covariates. The model is fit
using the Kalman-Filter on a state space version of the
continuous-time staochistic movement process.
Diff between crawl versions 1.0-3 dated 2009-02-03 and 1.0-4 dated 2009-05-06
DESCRIPTION | 34 +++++++++++++++++++--------------- R/crwMLE.R | 13 +++++++++++-- R/crwN2ll.R | 6 +++--- R/crwPredict.R | 6 ++++-- R/intToPOSIX.r |only R/mergeTrackStop.R | 4 ++-- man/crawl-package.Rd | 6 +++--- man/crwMLE.Rd | 19 +++++++++++-------- man/intToPOSIX.Rd |only man/northernFurSeal.Rd | 3 +-- 10 files changed, 54 insertions(+), 37 deletions(-)
Author: Matthieu Lesnoff
Diff between aod versions 1.1-30 dated 2009-05-05 and 1.1-31 dated 2009-05-06
Title: Analysis of Overdispersed Data
Description: This package provides a set of functions to analyse
overdispersed counts or proportions. Most of the methods are
already available elsewhere but are scattered in different
packages. The proposed functions should be considered as
complements to more sophisticated methods such as generalized
estimating equations (GEE) or generalized linear mixed effect
models (GLMM).
DESCRIPTION | 8 ++++----
inst/CITATION | 3 +--
man/aod-pkg.Rd | 4 ++--
3 files changed, 7 insertions(+), 8 deletions(-)
Author: Renan Cortes
Diff between RcmdrPlugin.qcc versions 1.0-3 dated 2009-05-05 and 1.0-4 dated 2009-05-06
More information about RcmdrPlugin.qcc at CRAN
Title: Rcmdr qcc Plug-In
Description: This package provides an Rcmdr "plug-in" based on the qcc
package, and it provides an integration between the user and
the tools of SPC.
DESCRIPTION | 6 +++---
R/RcmdrPlugin.qcc.r | 4 ++--
man/RcmdrPlugin.qcc-package.Rd | 2 +-
3 files changed, 6 insertions(+), 6 deletions(-)
Permanent link
Author: Campo Elias Pardo
Diff between FactoClass versions 0.7.6 dated 2008-11-19 and 0.7.7 dated 2009-05-06
Title: Combination of Factorial Methods and Cluster Analysis
Description: Multivariate exploration of a data table with factorial
analysis and cluster methods.
DESCRIPTION | 28 +++++++++++++++++-----------
man/Vietnam.Rd | 27 +++++++++++++++------------
man/dudi.tex.Rd | 41 +++++++++++++++++++++++------------------
man/plotFactoClass.Rd | 3 ++-
4 files changed, 57 insertions(+), 42 deletions(-)
Author: Matthias Graser
Title: EM-Algorithm for Jump Diffusion processes
Description: Calculates parameters for Jump Diffusion processes via
EM-Algorithm. The jumps-times are considered to be bernoulli
distributed with normally distributed jump-sizes.
Diff between EMJumpDiffusion versions 1.3.4 dated 2009-04-16 and 1.4 dated 2009-05-06
DESCRIPTION | 10 +++++----- R/rbern.R |only man/EMJumpDiffusion-package.Rd | 6 +++--- man/rbern.Rd |only man/simulate.Rd | 2 -- 5 files changed, 8 insertions(+), 10 deletions(-)
More information about EMJumpDiffusion at CRAN
Permanent link