Author: Holger Schwender, Arno Fritsch
Title: Analysis of High-Dimensional Categorical Data such as SNP Data
Description: Tools for the analysis of high-dimensional data
developed/implemented at the group "Statistical Complexity
Reduction In Molecular Epidemiology" (SCRIME). Main focus is on
SNP data. But most of the functions can also be applied to
other types of categorical data.
Diff between scrime versions 1.1.2 dated 2009-01-27 and 1.1.4 dated 2009-05-11
DESCRIPTION | 34 ++++++++++++++++++--------------- R/buildSNPannotation.R | 1 R/getResponse.R |only R/simulateSNPcatResponse.R | 43 +++++++----------------------------------- inst/CHANGES | 11 ++++++++++ man/rowChisq2Class.Rd | 5 ++++ man/simulateSNPcatResponse.Rd | 22 ++++++++++++++++----- 7 files changed, 61 insertions(+), 55 deletions(-)
Author: Roger D. Peng
Diff between gpclib versions 1.4-3 dated 2009-02-16 and 1.4-4 dated 2009-05-11
Title: General Polygon Clipping Library for R
Description: General polygon clipping routines for R based on Alan
Murta's C library
DESCRIPTION | 30 +++++++++++++++++-------------
R/zzz.R | 6 ++----
tests/reg-tests.Rout.save | 13 +++++++------
3 files changed, 26 insertions(+), 23 deletions(-)
Author: David Hajage
Title: Export R objects to asciidoc or txt2tags
Description: Coerce R object to asciidoc or txt2tags syntax. Package
comes with two drivers for Sweave.
Diff between ascii versions 0.1.2 dated 2009-05-04 and 0.1.3 dated 2009-05-11
DESCRIPTION | 8 ++++---- NAMESPACE | 3 ++- R/RweaveAsciidoc.r | 1 + R/SweaveAscii.r |only R/SweaveSyntaxAscii.r |only Rplots.pdf | 4 ++-- TODO | 1 + index-ggplot2.pdf | 4 ++-- man/RweaveAsciidoc.Rd | 12 +++++++++--- man/RweaveT2t.Rd | 12 +++++++++--- man/SweaveAscii.Rd |only man/ascii.Rd | 2 +- man/print.ascii.Rd | 4 ++-- 13 files changed, 33 insertions(+), 18 deletions(-)
Author: Jeffrey A. Ryan
Title: R API to Interactive Brokers Trader Workstation
Description: Provides native Raccess to Interactive Brokers Trader
Workstation API.
Diff between IBrokers versions 0.1-3 dated 2008-11-18 and 0.2-0 dated 2009-05-11
DESCRIPTION | 11 NAMESPACE | 19 R/eWrapper.MktData.CSV.R |only R/eWrapper.MktDepth.CSV.R |only R/eWrapper.R |only R/eventHandlers.R | 63 +- R/processMsg.R |only R/reqAccountUpdates.R | 19 R/reqContractDetails.R | 53 + R/reqCurrentTime.R | 27 R/reqHistoricalData.R | 49 + R/reqIds.R | 31 - R/reqMktData.R | 156 ----- R/reqMktDepth.R | 79 -- R/reqRealTimeBars.R | 89 +-- R/setServerLogLevel.R |only R/twsConnect.R | 32 - R/twsContract.R | 38 + R/twsDisconnect.R | 4 R/twsIDs.R | 7 R/twsOption.R | 6 R/zzz.R | 2 inst/doc/IBrokers.pdf | 1293 ++++++++++++++++++++-------------------------- inst/doc/RealTime.Rnw |only inst/doc/RealTime.pdf |only man/IBrokers-package.Rd | 26 man/eWrapper.Rd |only man/internal.Rd | 1 man/processMsg.Rd |only man/reqContractDetails.Rd | 33 + man/reqHistoricalData.Rd | 12 man/reqMktData.Rd | 40 - man/reqMktDepth.Rd | 10 man/reqRealTimeBars.Rd | 12 man/setServerLogLevel.Rd |only man/twsCALLBACK.Rd |only man/twsConnect.Rd | 21 man/twsContract.Rd | 17 man/twsCurrency.Rd | 2 man/twsEquity.Rd | 2 man/twsFuture.Rd | 2 man/twsOption.Rd | 11 42 files changed, 1032 insertions(+), 1135 deletions(-)
Author: John Boik
Diff between mixlow versions 0.01.1 dated 2009-02-23 and 0.01-2 dated 2009-05-11
Title: mixlow method for assessing drug synergism
Description: mixlow software for assessing drug synergism/antagonism
DESCRIPTION | 14 ++++++++------
man/plotLoeweData.Rd | 2 +-
2 files changed, 9 insertions(+), 7 deletions(-)
Author: Patrick E. Meyer, Frederic Lafitte, Gianluca Bontempi
Title: Mutual Information Network Inference
Description: This package implements various algorithms for inferring
mutual information networks from data. All the algorithms
compute the mutual information matrix in order to infer a
network. Several mutual information estimators are implemented.
Diff between minet versions 1.4.0 dated 2009-05-10 and 1.6.0 dated 2009-05-11
minet-1.4.0/minet/inst/doc/minet.bib |only minet-1.6.0/minet/CHANGES | 13 minet-1.6.0/minet/DESCRIPTION | 7 minet-1.6.0/minet/R/build.mim.R | 5 minet-1.6.0/minet/R/disc.R | 6 minet-1.6.0/minet/demo/demo.R | 2 minet-1.6.0/minet/inst/doc/minet.Rnw | 187 +- minet-1.6.0/minet/inst/doc/minet.pdf | 2311 ++++++++++++++++------------------- minet-1.6.0/minet/man/build.mim.Rd | 14 minet-1.6.0/minet/man/disc.Rd | 7 minet-1.6.0/minet/man/minet.Rd | 4 minet-1.6.0/minet/man/mr.net.Rd | 27 minet-1.6.0/minet/man/syn.data.Rd | 5 minet-1.6.0/minet/man/vis.res.Rd | 7 minet-1.6.0/minet/src/disc.cpp | 4 15 files changed, 1286 insertions(+), 1313 deletions(-)
Author: Torsten Hothorn, Kurt Hornik, Mark A. van de Wiel and Achim
Zeileis
Title: Conditional Inference Procedures in a Permutation Test Framework
Description: Conditional inference procedures for the general
independence problem including two-sample, K-sample
(non-parametric ANOVA), correlation, censored, ordered and
multivariate problems.
Diff between coin versions 1.0-3 dated 2009-04-01 and 1.0-4 dated 2009-05-11
CHANGES | 5 ++++ DESCRIPTION | 8 +++--- R/ClassicalTests.R | 47 ++++++++++++++++++++++++--------------- R/MTP.R | 1 inst/doc/LegoCondInf.pdf |binary inst/doc/MAXtest.Rnw | 2 - inst/doc/MAXtest.pdf |binary inst/doc/coin.pdf |binary inst/doc/coin_implementation.pdf |binary inst/doc/references.bib | 6 ++-- tests/bugfixes.R | 6 ++++ tests/bugfixes.Rout.save | 28 +++++++++++++++++++++-- 12 files changed, 75 insertions(+), 28 deletions(-)
Author: Tomoaki Nakatani
Diff between ccgarch versions 0.1.3 dated 2009-05-04 and 0.1.4-1 dated 2009-05-11
Title: Conditional Correlation GARCH models
Description: Functions for estimating and simulating the family of the
CC-GARCH models.
DESCRIPTION | 8 ++++----
NAMESPACE | 1 +
R/dcc_estimation.R | 16 ++++++++--------
R/loglik_dcc.R |only
inst/CITATION | 19 ++++++++++++-------
man/loglik_dcc.Rd |only
6 files changed, 25 insertions(+), 19 deletions(-)
Author: David Ardia
Diff between bayesGARCH versions 1-00.02 dated 2008-12-04 and 1-00.04 dated 2009-05-11
Title: Bayesian Estimation of the GARCH(1,1) Model with Student-t
Innovations
Description: This package provides the bayesGARCH function which
performs the Bayesian estimation of the GARCH(1,1) model with
Student's t innovations.
bayesGARCH-1-00.02/bayesGARCH/XEmacs-21.4.20.lnk |only
bayesGARCH-1-00.04/bayesGARCH/COPYRIGHTS |only
bayesGARCH-1-00.04/bayesGARCH/DESCRIPTION | 28 +++--
bayesGARCH-1-00.04/bayesGARCH/NEWS |only
bayesGARCH-1-00.04/bayesGARCH/R/onload.R | 2
bayesGARCH-1-00.04/bayesGARCH/README | 21 +---
bayesGARCH-1-00.04/bayesGARCH/THANKS |only
bayesGARCH-1-00.04/bayesGARCH/inst/CITATION | 109 ++++++++---------------
bayesGARCH-1-00.04/bayesGARCH/man/bayesGARCH.Rd | 59 +++++++-----
bayesGARCH-1-00.04/bayesGARCH/man/dem2gbp.Rd | 17 ++-
10 files changed, 110 insertions(+), 126 deletions(-)
Author: Murray Aitkin, Brian Francis, John Hinde, Ross Darnell
Diff between SMIR versions 0.01 dated 2009-05-04 and 0.02 dated 2009-05-11
Title: Companion to Statistical Modelling in R
Description: This package accompanies Aitkin et al, Statistical
Modelling in R, OUP, 2009. The package contains some functions
and datasets used in the text.
SMIR-0.01/SMIR/CITATION |only
SMIR-0.02/SMIR/DESCRIPTION | 10 ++--
SMIR-0.02/SMIR/data/stan.rda |binary
SMIR-0.02/SMIR/man/NPL.bands.Rd | 3 -
SMIR-0.02/SMIR/man/R2.Rd | 29 +----------
SMIR-0.02/SMIR/man/R2CV.Rd | 2
SMIR-0.02/SMIR/man/Rsq.Rd | 2
SMIR-0.02/SMIR/man/betablok.Rd | 12 ++--
SMIR-0.02/SMIR/man/bronchitis.Rd | 6 +-
SMIR-0.02/SMIR/man/byssinosis.Rd | 8 +--
SMIR-0.02/SMIR/man/cars.Rd | 6 +-
SMIR-0.02/SMIR/man/chd.Rd | 7 +-
SMIR-0.02/SMIR/man/claims.Rd | 9 +--
SMIR-0.02/SMIR/man/coxph.disparity.Rd | 2
SMIR-0.02/SMIR/man/disparity.Rd | 28 -----------
SMIR-0.02/SMIR/man/disparity.glm.Rd | 38 +--------------
SMIR-0.02/SMIR/man/disparity.lm.Rd | 38 ++-------------
SMIR-0.02/SMIR/man/faults.Rd | 5 --
SMIR-0.02/SMIR/man/feigl.Rd | 4 -
SMIR-0.02/SMIR/man/gehan.Rd | 6 +-
SMIR-0.02/SMIR/man/ghq.Rd | 5 --
SMIR-0.02/SMIR/man/hostility.Rd | 9 +--
SMIR-0.02/SMIR/man/insult.Rd | 4 -
SMIR-0.02/SMIR/man/lsat.Rd | 9 +--
SMIR-0.02/SMIR/man/miners.Rd | 18 ++++---
SMIR-0.02/SMIR/man/poison.Rd | 7 +-
SMIR-0.02/SMIR/man/prentice.Rd | 4 -
SMIR-0.02/SMIR/man/solv.Rd | 8 +--
SMIR-0.02/SMIR/man/stackloss.Rd | 6 +-
SMIR-0.02/SMIR/man/stan.Rd | 83 ++++++++++++++++++----------------
SMIR-0.02/SMIR/man/statlab.Rd | 7 +-
SMIR-0.02/SMIR/man/summary.treg.Rd | 37 ++-------------
SMIR-0.02/SMIR/man/toxaemia.Rd | 4 -
SMIR-0.02/SMIR/man/toxoplas.Rd | 8 +--
SMIR-0.02/SMIR/man/trees.Rd | 6 +-
SMIR-0.02/SMIR/man/treg.Rd | 4 -
SMIR-0.02/SMIR/man/trypanos.Rd | 7 --
SMIR-0.02/SMIR/man/vaso.Rd | 2
SMIR-0.02/SMIR/man/vietnam.Rd | 9 ++-
SMIR-0.02/SMIR/man/woolson.Rd | 8 ---
40 files changed, 163 insertions(+), 297 deletions(-)
Author: David Ardia, Lennart F. Hoogerheide and Herman K. van Dijk
Title: Adaptive Mixture of Student-t distributions
Description: This package provides functions to perform the fitting of
an adaptive mixture of Student-t distributions to a target
density through its kernel function. The mixture approximation
can then be used as the importance density in importance
sampling or as the candidate density in the Metropolis-Hastings
algorithm to obtain quantities of interest for the target
density itself.
Diff between AdMit versions 1-01.01 dated 2009-01-25 and 1-01.02 dated 2009-05-11
DESCRIPTION | 36 ++- NEWS | 7 R/onload.R | 2 README | 43 ---- inst/CITATION | 12 - inst/doc/AdMit.pdf | 494 ++++++++++++++++++++++++++-------------------------- inst/doc/Rplots.pdf | 4 man/AdMit.Rd | 2 man/AdMitIS.Rd | 2 man/AdMitMH.Rd | 4 man/Mit.Rd | 6 11 files changed, 298 insertions(+), 314 deletions(-)
Author: Gregory R. Warnes. Includes R source code and/or documentation
contributed by (in alphabetical order): Ben Bolker, Lodewijk
Bonebakker, Robert Gentleman, Wolfgang Huber Andy Liaw, Thomas
Lumley, Martin Maechler, Arni Magnusson, Steffen Moeller, Marc
Schwartz, Bill Venables
Title: Various R programming tools for plotting data
Description: Various R programming tools for plotting data
Diff between gplots versions 2.7.0 dated 2009-04-23 and 2.7.1 dated 2009-05-11
ChangeLog | 1187 +++++++++++++++++++------------------- DESCRIPTION | 6 NEWS | 34 - R/balloonplot.R | 4 R/heatmap.2.R | 847 ++++++++++++++------------- R/plotCI.R | 8 inst/ChangeLog | 1187 +++++++++++++++++++------------------- inst/NEWS | 34 - man/balloonplot.Rd | 2 man/bandplot.Rd | 4 man/boxplot.n.Rd | 4 man/colorpanel.Rd | 2 man/heatmap.2.Rd | 212 ++++-- man/hist2d.Rd | 4 man/ooplot.Rd | 2 man/overplot.Rd | 2 man/plot.lm2.Rd | 2 man/plotCI.Rd | 32 - man/plotmeans.Rd | 4 man/residplot.Rd | 4 man/sinkplot.Rd | 2 man/smartlegend.Rd | 2 man/space.Rd | 4 man/textplot.Rd | 2 man/wapply.Rd | 4 tests/heatmap2Test.Rout.save | 113 +++ tests/heatmap_to_heatmap.2_test.R |only 27 files changed, 2006 insertions(+), 1702 deletions(-)
Author: Stephen A Sefick Jr.
Title: Stream Metabolism-A package for calculating single station
metabolism from diurnal Oxygen curves
Description: This package contains functions for calculating GPP, NDM,
and R from single station diurnal Oxygen curves
Diff between StreamMetabolism versions 0.03-2 dated 2009-04-15 and 0.03-3 dated 2009-05-11
StreamMetabolism-0.03-2/StreamMetabolism/R/integration.R |only StreamMetabolism-0.03-3/StreamMetabolism/DESCRIPTION | 8 +- StreamMetabolism-0.03-3/StreamMetabolism/R/EcosystemProduction.20.R | 2 StreamMetabolism-0.03-3/StreamMetabolism/R/EcosystemProduction.K.R | 2 StreamMetabolism-0.03-3/StreamMetabolism/R/contiguous.zoo.R | 2 StreamMetabolism-0.03-3/StreamMetabolism/R/read.production.R | 2 StreamMetabolism-0.03-3/StreamMetabolism/R/simp.R |only StreamMetabolism-0.03-3/StreamMetabolism/R/sunrise.set.R | 2 StreamMetabolism-0.03-3/StreamMetabolism/R/window.chron.R | 2 StreamMetabolism-0.03-3/StreamMetabolism/inst/CITATION | 35 ++++++---- StreamMetabolism-0.03-3/StreamMetabolism/man/EcosystemProduction.20.Rd | 11 +-- StreamMetabolism-0.03-3/StreamMetabolism/man/EcosystemProduction.K.Rd | 10 +- StreamMetabolism-0.03-3/StreamMetabolism/man/EcosystemProduction.Rd | 8 +- StreamMetabolism-0.03-3/StreamMetabolism/man/read.production.Rd | 2 StreamMetabolism-0.03-3/StreamMetabolism/man/window.chron.Rd | 8 +- 15 files changed, 52 insertions(+), 42 deletions(-)
More information about StreamMetabolism at CRAN
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