Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto, Steve
Ellner, Bruce Kendall
Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes
Diff between pomp versions 0.23-6 dated 2009-05-10 and 0.24-1 dated 2009-05-15
DESCRIPTION | 10 +++++----- R/simulate-pomp.R | 3 +++ data/euler.sir.rda |binary data/ou2.rda |binary data/rw2.rda |binary inst/ChangeLog | 19 +++++++++++++++++++ inst/doc/Rplots.pdf | 22 +++++++++++----------- inst/doc/compiled_code_in_pomp.Rnw | 2 +- inst/doc/compiled_code_in_pomp.pdf |binary inst/doc/intro_to_pomp.Rnw | 2 +- inst/doc/intro_to_pomp.pdf |binary inst/examples/logistic.R | 2 +- inst/include/pomp.h | 2 ++ man/nlf.Rd | 2 +- man/pfilter.Rd | 2 +- man/simulate-pomp.Rd | 2 ++ src/euler.c | 6 +++--- src/pomp.h | 2 ++ tests/logistic.R | 2 +- tests/logistic.Rout.save | 6 +++--- tests/ou2-nlf.R | 2 +- tests/ou2-nlf.Rout.save | 17 +++++++++-------- tests/ou2-simulate.R | 2 +- tests/ou2-simulate.Rout.save | 10 ++++++---- 24 files changed, 73 insertions(+), 42 deletions(-)
Author: Edzer J. Pebesma
Diff between gstat versions 0.9-59 dated 2009-02-04 and 0.9-60 dated 2009-05-15
Title: geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator
(co)simulation; variogram and variogram map plotting utility
functions.
DESCRIPTION | 15
R/gstat.cv.R | 6
R/krige.R | 2
R/print.variogramModel.R | 2
demo/snow.R | 4
inst/doc/gstat.pdf |34666 +++++++++++++++++++++++-----------------------
man/fit.variogram.reml.Rd | 2
man/get.contr.Rd | 2
man/krige.Rd | 13
man/krige.cv.Rd | 11
man/variogram.Rd | 2
11 files changed, 17889 insertions(+), 16836 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.92-2 dated 2009-05-07 and 0.92-4 dated 2009-05-15
DESCRIPTION | 8 R/FrF2.R | 44 - R/fac.design.R | 12 R/pb.R | 2 inst/NEWS | 9 tests/FrF2test.Rout.save | 1576 +++++++++++++++++++++++------------------------ 6 files changed, 819 insertions(+), 832 deletions(-)
Author: Ulrike Groemping, with contributions from Matthias Lehrkamp
Title: Relative importance of regressors in linear models
Description: relaimpo provides several metrics for assessing relative
importance in linear models. These can be printed, plotted and
bootstrapped. The recommended metric is lmg, which provides a
decomposition of the model explained variance into non-negative
contributions. There is a version of this package available
that additionally provides a new and also recommended metric
called pmvd. If you are a non-US user, you can download this
extended version from Ulrike Groempings web site.
Diff between relaimpo versions 2.1 dated 2008-08-12 and 2.1-1 dated 2009-05-15
relaimpo-2.1-1/relaimpo/DESCRIPTION | 36 ++++++++++------- relaimpo-2.1-1/relaimpo/inst/NEWS |only relaimpo-2.1-1/relaimpo/man/booteval.relimp.Rd | 4 - relaimpo-2.1-1/relaimpo/man/calc.relimp.Rd | 2 relaimpo-2.1-1/relaimpo/man/classesmethods.relaimpo.Rd | 4 - relaimpo-2.1-1/relaimpo/man/mianalyze.relimp.Rd | 30 +++++++------- relaimpo-2.1-1/relaimpo/man/relaimpo-package.Rd | 2 relaimpo-2.1-1/relaimpo/man/relimplm-class.Rd | 2 relaimpo-2.1-1/relaimpo/man/relimplmboot-class.Rd | 2 relaimpo-2.1-1/relaimpo/man/relimplmbootMI-class.Rd | 2 relaimpo-2.1-1/relaimpo/man/relimplmbooteval-class.Rd | 2 relaimpo-2.1/relaimpo/inst/doc |only 12 files changed, 48 insertions(+), 38 deletions(-)
Author: Jonathan P. Weeks
Diff between plink versions 1.0.0 dated 2009-04-19 and 1.1-0 dated 2009-05-15
Title: IRT Separate Calibration Linking Methods
Description: This package uses item response theory methods to compute
linking constants and conduct chain linking of unidimensional
or multidimensional tests for multiple groups under a
nonequivalent groups common item design. The unidimensional
methods include the Mean/Mean, Mean/Sigma, Haebara, and
Stocking-Lord methods for dichotomous (1PL, 2PL and 3PL) and/or
polytomous (graded response, partial credit/generalized partial
credit, nominal, and multiple-choice model) items. The
multidimensional methods include the Reckase-Martineau method
and extensions of the Haebara and Stocking-Lord method using a
single dilation parameter, multiple dilation parameters, or the
Oshima, Davey, & Lee approach for multidimensional extensions
of all the unidimensional dichotomous and polytomous item
response models. The package also includes functions for
importing item and/or ability parameters from common IRT
software and ploting item characteristic/category curves or
surfaces and vector plots.
DESCRIPTION | 10
NAMESPACE | 6
R/plink.R | 73 ++++---
R/read.bilog.R | 481 +++++++++++++++++++++++++++++++++++++++++++-----
inst/CITATION | 4
inst/NEWS | 10
man/as.irt.pars.Rd | 45 ++--
man/as.poly.mod.Rd | 6
man/as.weight.Rd | 35 +--
man/combine.pars.Rd | 24 +-
man/drm-methods.Rd | 11 -
man/gpcm-methods.Rd | 20 +
man/grm-methods.Rd | 6
man/irt.pars-class.Rd | 12 -
man/irt.prob-class.Rd | 11 -
man/link-class.Rd | 2
man/link.con.Rd | 4
man/list.poly-class.Rd | 10
man/mcm-methods.Rd | 33 ++-
man/md.mixed.Rd | 4
man/mixed-methods.Rd | 13 -
man/nrm-methods.Rd | 10
man/plink-methods.Rd | 55 ++---
man/plink-package.Rd | 4
man/plot.irt.prob.Rd | 16 -
man/poly.mod-class.Rd | 5
man/read.bilog.Rd | 142 ++++++++++++--
man/sep.pars-class.Rd | 7
man/sep.pars-methods.Rd | 31 +--
man/summary.irt.pars.Rd | 14 -
30 files changed, 843 insertions(+), 261 deletions(-)
Author: Simon Wood
Diff between mgcv versions 1.5-4 dated 2009-05-04 and 1.5-5 dated 2009-05-15
Title: GAMs with GCV/AIC/REML smoothness estimation and GAMMs by PQL
Description: Routines for GAMs and other generalized ridge regression
with multiple smoothing parameter selection by GCV, REML or
UBRE/AIC. Also GAMMs by REML or PQL. Includes a gam() function.
DESCRIPTION | 6 +++---
NAMESPACE | 1 +
R/gamm.r | 11 +++++++----
changeLog | 10 ++++++++++
4 files changed, 21 insertions(+), 7 deletions(-)
Author: Deepayan Sarkar
Diff between lattice versions 0.17-22 dated 2009-04-04 and 0.17-25 dated 2009-05-15
Title: Lattice Graphics
Description: Implementation of Trellis Graphics. See ?Lattice for a
brief introduction
DESCRIPTION | 8 +++----
NEWS | 7 ++++++
R/levelplot.R | 25 +++++++-----------------
inst |only
man/level.colors.Rd | 34 +++++++++++++++++++++++++-------
man/levelplot.Rd | 18 ++++++++++++-----
man/panel.levelplot.Rd | 51 +++++++++++++++++++++++--------------------------
po/R-de.po |only
po/R-en@quot.po |only
po/R-fr.po | 17 +++++++++++++++-
po/R-lattice.pot | 17 +++++++++++++++-
11 files changed, 115 insertions(+), 62 deletions(-)
Author: Vincent Goulet, Sébastien Auclair, Christophe Dutang, Xavier
Milhaud, Tommy Ouellet, Louis-Philippe Pouliot, Mathieu Pigeon
Title: Actuarial functions
Description: Additional actuarial science functionality, mostly in the
fields of loss distributions, risk theory (including ruin
theory), simulation of compound hierarchical models and
credibility theory, for the moment.
Diff between actuar versions 1.0-1 dated 2009-01-29 and 1.0-2 dated 2009-05-15
actuar-1.0-1/actuar/inst/doc/Rplots.pdf |only actuar-1.0-2/actuar/DESCRIPTION | 17 actuar-1.0-2/actuar/R/bstraub.R | 8 actuar-1.0-2/actuar/inst/NEWS | 20 actuar-1.0-2/actuar/inst/doc/Makefile | 7 actuar-1.0-2/actuar/inst/doc/actuar.pdf |binary actuar-1.0-2/actuar/inst/doc/coverage.pdf |binary actuar-1.0-2/actuar/inst/doc/credibility.pdf |binary actuar-1.0-2/actuar/inst/doc/lossdist.pdf | 2804 - actuar-1.0-2/actuar/inst/doc/risk.pdf |42410 +++++++++++++-------------- actuar-1.0-2/actuar/inst/doc/simulation.pdf |binary actuar-1.0-2/actuar/src/beta.c | 14 actuar-1.0-2/actuar/src/burr.c | 24 actuar-1.0-2/actuar/src/chisq.c | 14 actuar-1.0-2/actuar/src/dpq.h | 7 actuar-1.0-2/actuar/src/exp.c | 12 actuar-1.0-2/actuar/src/gamma.c | 12 actuar-1.0-2/actuar/src/genbeta.c | 14 actuar-1.0-2/actuar/src/genpareto.c | 26 actuar-1.0-2/actuar/src/invburr.c | 24 actuar-1.0-2/actuar/src/invexp.c | 14 actuar-1.0-2/actuar/src/invgamma.c | 20 actuar-1.0-2/actuar/src/invgauss.c | 2 actuar-1.0-2/actuar/src/invparalogis.c | 24 actuar-1.0-2/actuar/src/invpareto.c | 26 actuar-1.0-2/actuar/src/invtrgamma.c | 20 actuar-1.0-2/actuar/src/invweibull.c | 18 actuar-1.0-2/actuar/src/lgamma.c | 29 actuar-1.0-2/actuar/src/llogis.c | 27 actuar-1.0-2/actuar/src/lnorm.c | 2 actuar-1.0-2/actuar/src/paralogis.c | 24 actuar-1.0-2/actuar/src/pareto.c | 13 actuar-1.0-2/actuar/src/pareto1.c | 9 actuar-1.0-2/actuar/src/phtype.c | 2 actuar-1.0-2/actuar/src/trbeta.c | 28 actuar-1.0-2/actuar/src/trgamma.c | 26 actuar-1.0-2/actuar/src/weibull.c | 14 37 files changed, 22935 insertions(+), 22776 deletions(-)
Author: Dan Bode
Diff between Rsge versions 0.6.2 dated 2009-05-14 and 0.6.3 dated 2009-05-15
Title: Interface to the SGE Queuing System
Description: This package provides functions for using R with the SGE
cluster/grid queuing system.
DESCRIPTION | 4 +--
R/sge.options.R | 69 +++++++++++++++++++++++++++++------------------------
R/zzz.R | 1
README | 27 ++++++++++++++------
inst/README | 27 ++++++++++++++------
man/sge.options.Rd | 4 +++
6 files changed, 83 insertions(+), 49 deletions(-)
Author: Markus Loecher, Sense Networks
Title: Overlays on Google map tiles in R
Description: This package serves two purposes: (i) Provide a
comfortable R interface to query the Google server for static
maps, and (ii) Use the map as a background image to overlay
plots within R. This requires proper coordinate scaling.
Diff between RgoogleMaps versions 1.1 dated 2009-05-13 and 1.1.1 dated 2009-05-15
RgoogleMaps-1.1.1/RgoogleMaps/DESCRIPTION | 6 - RgoogleMaps-1.1.1/RgoogleMaps/inst/doc/RgoogleMaps-intro.Rnw | 43 +++-------- RgoogleMaps-1.1.1/RgoogleMaps/inst/doc/RgoogleMaps-intro.pdf |binary RgoogleMaps-1.1.1/RgoogleMaps/inst/doc/RgoogleMaps-intro.tex | 43 +++-------- RgoogleMaps-1.1.1/RgoogleMaps/man/RgoogleMaps-package.Rd | 2 RgoogleMaps-1.1/RgoogleMaps/inst/doc/MyTile4.jpg |only 6 files changed, 32 insertions(+), 62 deletions(-)
Author: Spencer Graves, Sundar Dorai-Raj, and Romain Francois
Title: RSiteSearch
Description: Alternative interfaces to RSiteSearch
Diff between RSiteSearch versions 0.1-5 dated 2009-05-04 and 1.0-3 dated 2009-05-15
DESCRIPTION | 12 ++++++------ NAMESPACE | 5 +++++ NEWS |only R/HTML.RSiteSearch.R | 5 +++-- R/Ops.RSiteSearch.R |only R/PackageSum2.R |only R/PackageSummary.R |only R/RSiteSearch.function.R | 34 ++++++++++++++++++++-------------- R/hits.R |only R/intersectRSiteSearch.R |only R/sortRSiteSearch.R |only R/summary.RSiteSearch.R | 7 ++++--- R/unionRSiteSearch.R |only man/PackageSum2.Rd |only man/PackageSummary.Rd |only man/RSiteSearch.function.Rd | 26 +++++++++++++++++++------- man/hits.Rd |only man/sortRSiteSearch.Rd |only man/summary.RSiteSearch.Rd | 11 ++++------- man/unionRSiteSearch.Rd |only 20 files changed, 61 insertions(+), 39 deletions(-)
Author: Satwik Rajaram and Yoshi Oono
Title: Non-clustered heatmap alternatives
Description: NeatMap is a package to create heatmap like plots in 2 and
3 dimensions, without the need for cluster analysis. Like the
heatmap, the plots created by NeatMap display both a
dimensionally reduced representation of the data as well as the
data itself. They are intended to be used in conjunction with
dimensional reduction techniques such as PCA.
Diff between NeatMap versions 0.1 dated 2009-05-13 and 0.2 dated 2009-05-15
DESCRIPTION | 6 +++--- src/nMDS_R.h | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-)
Author: Jarrod Hadfield
Title: MCMC Generalised Linear Mixed Models
Description: MCMC Generalised Linear Mixed Models
Diff between MCMCglmm versions 1.09 dated 2009-04-17 and 1.10 dated 2009-05-15
DESCRIPTION | 8 ++++---- R/MCMCglmm.R | 22 +++++++++++----------- R/posterior.mode.R | 10 ++++++++-- inst/CITATION | 4 ++-- inst/doc/Figures/TEST.R | 42 +++++++++++++++++++++--------------------- inst/doc/Figures/Tutorial.Rnw | 3 +-- inst/doc/Tutorial.Rnw | 2 +- inst/doc/Tutorial.pdf |binary man/MCMCglmm.Rd | 4 +++- man/posterior.mode.Rd | 10 +++++----- src/MCMCglmm.cc | 19 ++++++++++++++----- 11 files changed, 70 insertions(+), 54 deletions(-)
Author: Walter Resch with information from 'Measurement System
Assessment Via Generalized Inference' by Michael Hamada and Sam
Weerandi
Title: Gauge R and R Confidence Intervals
Description: Generates confidence intervals for the variance components
for Gauge R and R data using ANOVA with the Satterthwaite
approximation as well as the method of Generalized Inference.
Diff between GRRGI versions 1.0 dated 2009-01-14 and 1.1 dated 2009-05-15
DESCRIPTION | 34 ++++--- R/MLGI.R | 225 +++++++++++++++++++++++++++------------------------ R/RRgraph.R | 2 R/anovasat.R | 148 +++++++++++++++++---------------- R/intsignif.R | 18 ++-- R/ratiograph.R | 4 Read-and-delete-me |only data/GI1.rda |binary data/GI2.rda |binary man/GI1.Rd | 14 +-- man/GI2.Rd | 14 +-- man/GRRGI-package.Rd | 32 +++++-- man/HWstudy1.Rd | 9 +- man/HWstudy2.Rd | 9 +- man/MLGI.Rd | 21 +++- man/RRgraph.Rd | 14 ++- man/anovasat.Rd | 19 +++- man/intsignif.Rd | 8 + man/ratiograph.Rd | 13 ++ man/sat1.Rd | 14 ++- man/sat2.Rd | 14 ++- 21 files changed, 354 insertions(+), 258 deletions(-)
Author: Hadley Wickham
Diff between DescribeDisplay versions 0.1.3 dated 2007-03-14 and 0.2.0 dated 2009-05-15
More information about DescribeDisplay at CRAN
Title: R interface to DescribeDisplay (GGobi plugin)
Description: Produce publication quality graphics from output of
GGobi's describe display plugin
DescribeDisplay-0.1.3/DescribeDisplay/NAMESPACE |only
DescribeDisplay-0.1.3/DescribeDisplay/cattest.r |only
DescribeDisplay-0.1.3/DescribeDisplay/examples |only
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DescribeDisplay-0.2.0/DescribeDisplay/R/axis-geom.r |only
DescribeDisplay-0.2.0/DescribeDisplay/R/axis-grob.r |only
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DescribeDisplay-0.2.0/DescribeDisplay/R/ggplot-barchart.r |only
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DescribeDisplay-0.2.0/DescribeDisplay/R/ggplot.r | 180 +++---
DescribeDisplay-0.2.0/DescribeDisplay/R/plots.r | 290 ++++------
DescribeDisplay-0.2.0/DescribeDisplay/R/utils.r | 80 +-
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91 files changed, 402 insertions(+), 388 deletions(-)
Permanent link