Author: Michael A Rotondi
Diff between epibasix versions 0.1 dated 2007-10-16 and 1.1 dated 2009-05-18
Title: Elementary Epidemiological Functions for a Graduate
Epidemiology\Biostatistics Course
Description: This package contains elementary tools for analysis of
common epidemiological problems, ranging from sample size
estimation, through 2x2 contingency table analysis and basic
measures of agreement (kappa, sensitivity/specificity).
Appropriate print and summary statements are also written to
facilitate interpretation wherever possible. This package is a
work in progress, so any comments or suggestions would be
appreciated. Source code is commented throughout to facilitate
modification. The target audience includes graduate students
in various epi/biostatistics courses.
DESCRIPTION | 32 ++++++++++++++++++++++----------
R/epi2x2.R | 4 ++--
R/epiKappa.R | 12 ++++++------
R/epiTTest.R | 4 +---
R/sensSpec.R | 10 ++++------
R/univar.R | 2 +-
6 files changed, 36 insertions(+), 28 deletions(-)
Author: Michael Lawrence
Diff between RGtk2 versions 2.12.10 dated 2009-03-26 and 2.12.11 dated 2009-05-18
Title: R bindings for Gtk 2.8.0 and above
Description: Facilities in the R language for programming graphical
interfaces using Gtk, the Gimp Tool Kit.
DESCRIPTION | 10 ++--
R/gobject.R | 16 +++---
R/gtkManuals.R | 13 ++---
man/GObject.Rd | 6 +-
man/RGtkObject.Rd | 3 -
man/gtkSelectionDataSet.Rd | 3 -
src/libgladeManuals.c | 106 +++++++++++++++++++++++++--------------------
7 files changed, 89 insertions(+), 68 deletions(-)
Author: Thomas Lumley
Title: analysis of complex survey samples
Description: Summary statistics, generalised linear models, Cox models,
loglinear models, and general maximum pseudolikelihood
estimation for multistage stratified, cluster-sampled,
unequally weighted survey samples. Variances by Taylor series
linearisation or replicate weights. Post-stratification,
calibration, and raking. Two-phase designs. Graphics.
Predictive margins by direct standardization.
Diff between survey versions 3.14 dated 2009-04-15 and 3.15 dated 2009-05-18
DESCRIPTION | 10 +- NAMESPACE | 23 +++++- R/ftable.svystat.R | 5 + R/ht.R | 88 +++--------------------- R/margins.R | 169 +++++++++++++++++++++++++++++++++++++++++++++-- R/survey.R | 14 ++- R/surveyrep.R | 4 + R/svykm.R | 13 ++- R/twophase.R | 9 +- R/twophase2.R |only inst/CITATION | 4 - inst/NEWS | 23 ++++++ inst/doc/domain.pdf |binary inst/doc/epi.pdf |binary inst/doc/phase1.pdf |binary inst/doc/sparse.pdf |only inst/doc/survey.pdf |binary man/marginpred.Rd |only man/twophase.Rd | 61 ++++++++++------ tests/domain.R | 65 ++++++++++++++++++ tests/domain.Rout.save | 124 +++++++++++++++++++++++++++++++++- tests/twophase.R | 39 ++++++++-- tests/twophase.Rout.save | 133 +++++++++++++++++++++++++++--------- 23 files changed, 614 insertions(+), 170 deletions(-)
More information about odfWeave.survey at CRAN
Permanent link
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.92-4 dated 2009-05-15 and 0.92-5 dated 2009-05-18
DESCRIPTION | 8 ++++---- R/estimable2fis.R | 5 +++-- R/fac.design.R | 2 +- inst/NEWS | 13 +++++++++++++ man/CatalogueAccessors.Rd | 17 ++++++++--------- man/FrF2.Rd | 11 +++++++++++ 6 files changed, 40 insertions(+), 16 deletions(-)
Author: Frank E Harrell Jr
Diff between Design versions 2.1-2 dated 2008-11-04 and 2.2-0 dated 2009-05-18
Title: Design Package
Description: Regression modeling, testing, estimation, validation,
graphics, prediction, and typesetting by storing enhanced model
design attributes in the fit. Design is a collection of about
180 functions that assist and streamline modeling, especially
for biostatistical and epidemiologic applications. It also
contains new functions for binary and ordinal logistic
regression models and the Buckley-James multiple regression
model for right-censored responses, and implements penalized
maximum likelihood estimation for logistic and ordinary linear
models. Design works with almost any regression model, but it
was especially written to work with logistic regression, Cox
regression, accelerated failure time models, ordinary linear
models, the Buckley-James model, and generalized least squares
for serially or spatially correlated observations.
Design-2.1-2/Design/R/summary.survfit.s |only
Design-2.1-2/Design/R/survfit.s |only
Design-2.1-2/Design/inst/CHANGELOG |only
Design-2.1-2/Design/man/Overview.Rd |only
Design-2.1-2/Design/man/summary.survfit.Rd |only
Design-2.1-2/Design/man/survfit.Rd |only
Design-2.1-2/Design/src/old_src |only
Design-2.2-0/Design/DESCRIPTION | 40 -
Design-2.2-0/Design/INDEX | 127 ++-
Design-2.2-0/Design/R/Design.Misc.s | 75 +-
Design-2.2-0/Design/R/Design.s | 538 ++++++++--------
Design-2.2-0/Design/R/Design.trans.s | 78 +-
Design-2.2-0/Design/R/Surv.s | 4
Design-2.2-0/Design/R/anova.Design.s | 812 ++++++++++++-------------
Design-2.2-0/Design/R/bj.s | 2
Design-2.2-0/Design/R/calibrate.default.s | 4
Design-2.2-0/Design/R/calibrate.s | 41 -
Design-2.2-0/Design/R/cph.s | 671 ++++++++++----------
Design-2.2-0/Design/R/groupkm.s | 6
Design-2.2-0/Design/R/lrm.s | 5
Design-2.2-0/Design/R/nomogram.Design.s | 241 +++++--
Design-2.2-0/Design/R/ols.s | 5
Design-2.2-0/Design/R/plot.Design.s | 573 ++++++++---------
Design-2.2-0/Design/R/predab.resample.s | 43 -
Design-2.2-0/Design/R/psm.s | 2
Design-2.2-0/Design/R/residuals.cph.s | 6
Design-2.2-0/Design/R/survest.cph.s | 2
Design-2.2-0/Design/R/survfit.cph.null.s | 320 ++++-----
Design-2.2-0/Design/R/survfit.cph.s | 202 +++---
Design-2.2-0/Design/R/survfit.formula.s |only
Design-2.2-0/Design/R/survplot.survfit.s | 483 +++++++++-----
Design-2.2-0/Design/R/val.prob.s | 3
Design-2.2-0/Design/R/validate.cph.s | 189 ++---
Design-2.2-0/Design/R/validate.psm.s | 3
Design-2.2-0/Design/inst/copyright |only
Design-2.2-0/Design/man/Design-internal.Rd | 1
Design-2.2-0/Design/man/Design.trans.Rd | 6
Design-2.2-0/Design/man/bj.Rd | 340 +++++-----
Design-2.2-0/Design/man/calibrate.Rd | 14
Design-2.2-0/Design/man/cph.Rd | 522 ++++++++--------
Design-2.2-0/Design/man/lrm.fit.Rd | 4
Design-2.2-0/Design/man/nomogram.Rd | 733 +++++++++++-----------
Design-2.2-0/Design/man/plot.Design.Rd | 21
Design-2.2-0/Design/man/plot.xmean.ordinaly.Rd | 119 +--
Design-2.2-0/Design/man/psm.Rd | 294 ++++-----
Design-2.2-0/Design/man/survfit.cph.Rd | 9
Design-2.2-0/Design/man/survfit.formula.Rd |only
Design-2.2-0/Design/man/survplot.Rd | 34 -
Design-2.2-0/Design/man/val.prob.Rd | 4
Design-2.2-0/Design/man/zzzDesignOverview.Rd |only
Design-2.2-0/Design/src/agexact.c |only
Design-2.2-0/Design/src/agfit3.c |only
Design-2.2-0/Design/src/agfit5.c |only
Design-2.2-0/Design/src/agmart.c |only
Design-2.2-0/Design/src/agmart2.c |only
Design-2.2-0/Design/src/agscore.c |only
Design-2.2-0/Design/src/agsurv1.c |only
Design-2.2-0/Design/src/agsurv2.c |only
Design-2.2-0/Design/src/agsurv3.c |only
Design-2.2-0/Design/src/chinv2.c |only
Design-2.2-0/Design/src/chinv3.c |only
Design-2.2-0/Design/src/cholesky2.c |only
Design-2.2-0/Design/src/cholesky3.c |only
Design-2.2-0/Design/src/chsolve2.c |only
Design-2.2-0/Design/src/chsolve3.c |only
Design-2.2-0/Design/src/cox_Rcallback.c |only
Design-2.2-0/Design/src/coxdetail.c |only
Design-2.2-0/Design/src/coxfit2.c |only
Design-2.2-0/Design/src/coxfit5.c |only
Design-2.2-0/Design/src/coxmart.c |only
Design-2.2-0/Design/src/coxph_wtest.c |only
Design-2.2-0/Design/src/coxscho.c |only
Design-2.2-0/Design/src/coxscore.c |only
Design-2.2-0/Design/src/dmatrix.c |only
Design-2.2-0/Design/src/doloop.c |only
Design-2.2-0/Design/src/lrmfit.f | 23
Design-2.2-0/Design/src/mlmats.f | 66 +-
Design-2.2-0/Design/src/pyears1.c |only
Design-2.2-0/Design/src/pyears2.c |only
Design-2.2-0/Design/src/pyears3.c |only
Design-2.2-0/Design/src/pystep.c |only
Design-2.2-0/Design/src/robcovf.f | 4
Design-2.2-0/Design/src/survConcordance.c |only
Design-2.2-0/Design/src/survS.h |only
Design-2.2-0/Design/src/survdiff2.c |only
Design-2.2-0/Design/src/survfit4.c |only
Design-2.2-0/Design/src/survpenal.c |only
Design-2.2-0/Design/src/survproto.h |only
Design-2.2-0/Design/src/survreg6.c |only
Design-2.2-0/Design/src/survreg7.c |only
Design-2.2-0/Design/src/survregc1.c |only
Design-2.2-0/Design/src/survregc2.c |only
92 files changed, 3560 insertions(+), 3109 deletions(-)
Author: Michael A. Lawrence
Title: Easy analysis and visualization of factorial experiments.
Description: This package facilitates easy analysis of factorial
experiments, including purely within-Ss designs (a.k.a.
"repeated measures"), purely between-Ss designs, and mixed
within-and-between-Ss designs. The functions in this package
provide easy access to descriptive statistics, ANOVA,
permutation tests, and visualization of results.
Diff between ez versions 1.1 dated 2009-04-27 and 1.2 dated 2009-05-18
DESCRIPTION | 11 +-- NAMESPACE | 2 R/ez-internal.R | 182 +++++++++++++++++++++++++++++++++++++++++++++++------- R/ezPlot.R | 19 ++--- R/ezStats.R | 78 ----------------------- R/relev.R |only man/ez-package.Rd | 11 +-- man/ezANOVA.Rd | 9 +- man/ezPlot.Rd | 12 +-- man/ezStats.Rd | 5 - man/relev.Rd |only 11 files changed, 192 insertions(+), 137 deletions(-)
Author: Duncan Temple Lang
Title: HTTP request interface
Description: The package allows one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Diff between RCurl versions 0.94-1 dated 2009-02-07 and 0.95-1 dated 2009-05-18
Changes.html | 29 ++ CodeGeneration/enum.c.t00.tu |only CodeGeneration/generate.R | 2 DESCRIPTION | 42 ++-- FAQ.html | 80 +++++++- NAMESPACE | 3 R/dynamic.R |only R/form.S | 51 +++-- R/getURLContent.R | 61 +++++- R/header.R | 10 - inst/doc/philosophy.html | 421 +++++++++++++++++++++---------------------- inst/doc/philosophy.pdf |only inst/doc/philosophy.xml | 29 +- inst/enums/Renums.c | 51 ++++- man/base64.Rd | 20 +- man/basicTextGatherer.Rd | 3 man/dynCurlReader.Rd |only man/getURL.Rd | 8 man/postForm.Rd | 24 +- src/Rcurl.h | 4 src/curl.c | 4 tests/dynSetReader.R |only tickets.tcp |only 23 files changed, 531 insertions(+), 311 deletions(-)
Author: Piotr Romanski
Title: Selecting attributes
Description: This package provides functions for selecting attributes
from a given dataset. Attribute subset selection is the process
of identifying and removing as much of the irrevelant and
redundant information as possible.
Diff between FSelector versions 0.15 dated 2009-05-06 and 0.17 dated 2009-05-18
DESCRIPTION | 8 ++++---- R/discretize.R | 3 --- R/misc.R | 2 +- R/search.hill.climbing.R | 1 - R/selector.random.forest.R | 3 +-- R/selector.relief.R | 20 ++++++++++++++++---- man/FSelector-package.Rd | 2 +- 7 files changed, 23 insertions(+), 16 deletions(-)