Author: David Meyer and Kurt Hornik (with contributions by Christian
Buchta)
Title: Sets, Generalized Sets, and Customizable Sets.
Description: Data structures and basic operations for ordinary sets,
generalizations such as fuzzy sets, multisets, and fuzzy
multisets, and customizable sets.
Diff between sets versions 0.6 dated 2009-02-10 and 0.7 dated 2009-05-24
DESCRIPTION | 15 NAMESPACE | 11 NEWS | 17 R/complement.R | 110 - R/converters.R | 16 R/cset.R | 7 R/cut.R | 71 R/extractors.R | 85 - R/fuzzyfuns.R | 33 R/gset.R | 108 - R/memberships.R | 4 R/plot.R | 4 R/predicates.R | 40 R/set.R | 2 R/similarity.R | 53 R/sumdiff.R | 10 R/utilities.R | 5 data |only inst/NEWS | 17 inst/doc/sets.pdf |binary man/cset.Rd | 15 man/fuzzydocs.Rd |only man/fuzzyfuns.Rd | 16 man/fuzzyinference.Rd | 3 man/gset.Rd | 46 man/plot.Rd | 7 man/set.Rd | 7 man/similarity.Rd |only paper/JSS-clusterplot.eps | 271 ++- paper/JSS-clusterplot.pdf | 312 ++- paper/JSS-clusterplot2.eps |only paper/JSS-clusterplot2.pdf |only paper/JSS-plot1fig.eps | 2 paper/JSS-plot1fig.pdf | 24 paper/JSS-plot2fig.eps | 2 paper/JSS-plot2fig.pdf | 24 paper/JSS-plot3fig.eps | 2 paper/JSS-plot3fig.pdf | 24 paper/JSS-plot4fig.eps | 2 paper/JSS-plot4fig.pdf | 24 paper/JSS.Rnw | 359 ++-- paper/JSS.aux | 63 paper/JSS.bbl | 40 paper/JSS.blg | 58 paper/JSS.log | 130 - paper/JSS.out | 1 paper/JSS.pdf | 3812 +++++++++++++++++++++++++-------------------- paper/JSS.tex | 464 +++-- paper/Rplots.pdf | 654 +++++-- paper/sets.bib | 36 50 files changed, 4326 insertions(+), 2680 deletions(-)
Author: David Meyer and Christian Buchta
Title: Distance and Similarity Measures
Description: Provides an extensible framework for the effcient
calculation of auto- and cross-proximities, along with
implementations of the most popular ones.
Diff between proxy versions 0.4-2 dated 2009-03-31 and 0.4-3 dated 2009-05-24
DESCRIPTION | 8 ++++---- NEWS | 6 ++++++ R/dist.R | 2 +- inst/NEWS | 6 ++++++ man/dist.Rd | 2 +- src/apply.c | 12 ++++++------ 6 files changed, 24 insertions(+), 12 deletions(-)
Author: Florian Wickelmaier
Diff between eba versions 1.5-2 dated 2008-10-30 and 1.5-3 dated 2009-05-24
Title: Elimination-By-Aspects (EBA) Models
Description: Fitting and testing multi-attribute probabilistic choice
models, especially the Bradley-Terry-Luce (BTL) model (Bradley
& Terry, 1952; Luce, 1959), elimination-by-aspects (EBA) models
(Tversky, 1972), and preference tree (Pretree) models (Tversky
& Sattath, 1979).
ChangeLog | 12 ++++++++
DESCRIPTION | 19 ++++++++------
R/EBA_fast.R | 78 +---------------------------------------------------------
R/eba.order.R | 7 +++--
R/strans.R |only
man/boot.Rd | 2 -
man/strans.Rd | 36 +++++++++++++++++++++++---
7 files changed, 63 insertions(+), 91 deletions(-)
Author: John Maindonald and W. John Braun
Title: Data Analysis And Graphics
Description: various data sets used in examples and exercises in the
book Maindonald, J.H. and Braun, W.J. (2003, 2007) "Data
Analysis and Graphics Using R".
Diff between DAAG versions 0.99-1 dated 2009-05-14 and 0.99-2 dated 2009-05-24
DAAG-0.99-1/DAAG/man/cv.binary.Rd |only DAAG-0.99-2/DAAG/CVbinary.R |only DAAG-0.99-2/DAAG/DESCRIPTION | 8 +- DAAG-0.99-2/DAAG/INDEX | 5 + DAAG-0.99-2/DAAG/R/CVbinary.R | 85 ++++++++++++++--------------- DAAG-0.99-2/DAAG/R/cv.binary.R | 85 ++++++++++++++--------------- DAAG-0.99-2/DAAG/data/cps1.RData |only DAAG-0.99-2/DAAG/data/cps2.RData |only DAAG-0.99-2/DAAG/data/cps3.RData |only DAAG-0.99-2/DAAG/inst/misc/viewtemps.RData |binary DAAG-0.99-2/DAAG/man/CVbinary.Rd | 28 ++++++--- DAAG-0.99-2/DAAG/man/cps1.Rd |only DAAG-0.99-2/DAAG/man/cps2.Rd |only DAAG-0.99-2/DAAG/man/cps3.Rd |only DAAG-0.99-2/DAAG/man/frogs.Rd | 22 ------- 15 files changed, 110 insertions(+), 123 deletions(-)
Author: Hugh Chipman
Diff between BayesTree versions 0.2-0 dated 2006-10-17 and 0.3-1 dated 2009-05-24
Title: Bayesian Methods for Tree Based Models
Description: Implementation of BART:Bayesian Additive Regression Trees,
Chipman, George, McCulloch (2009)
DESCRIPTION | 21 ++++++++-----
NAMESPACE | 2 -
R/bart.R | 79 ++++++++++++++++++++++++++++++++++++++++++++------
R/makeind.R |only
R/pd2bart.R | 6 +++
R/pdbart.R | 6 +++
R/plot.bart.R | 39 +++++++++++++++++-------
man/bart.Rd | 79 +++++++++++++++++++++++++++++++++-----------------
man/makeind.Rd |only
man/pdbart.Rd | 2 +
src/mbart.cpp | 89 +++++++++++++++++++++++++++++++++++++++++++--------------
11 files changed, 246 insertions(+), 77 deletions(-)
Author: Julian Taylor
Diff between wgaim versions 0.2 dated 2008-11-27 and 0.2-2 dated 2009-05-24
Title: Whole Genome Average Interval Mapping for QTL detection using
mixed models
Description: This package integrates sophisticated mixed modelling
methods with a whole genome approach to detecting significant
QTL's in linkage maps.
DESCRIPTION | 32 ++++++++++++++++++++------------
R/wgaim.R | 25 ++++++++++++++++++++++---
2 files changed, 42 insertions(+), 15 deletions(-)
Author: Terry M Therneau and Beth Atkinson
Diff between rpart versions 3.1-43 dated 2009-03-10 and 3.1-44 dated 2009-05-24
Title: Recursive Partitioning
Description: Recursive partitioning and regression trees
ChangeLog | 2 +
DESCRIPTION | 15 ++++----
R/rpart.exp.s | 2 -
R/rpart.poisson.s | 61 ++++++++++++++++-----------------
inst/po/de |only
inst/po/en@quot/LC_MESSAGES/R-rpart.mo |binary
inst/po/en@quot/LC_MESSAGES/rpart.mo |binary
inst/po/fr/LC_MESSAGES/R-rpart.mo |binary
inst/po/ru/LC_MESSAGES/R-rpart.mo |binary
po/R-de.po |only
po/R-en@quot.po | 14 +++----
po/R-fr.po | 6 +--
po/R-rpart.pot | 8 ++--
po/R-ru.po | 19 ++++++----
po/de.po |only
po/en@quot.po | 6 +--
16 files changed, 71 insertions(+), 62 deletions(-)
Author: Luke J. Keele
Title: Perform Rosenbaum bounds sensitivity tests for matched data.
Description: Takes matched data and calculates Rosenbaum bounds for the
treatment effect. Calculates bounds for binary data,
Hodges-Lehmann point estimates, Wilcoxon signed-rank test, and
for data with multiple matched controls. Is designed to work
with the Matching package and operate on Match() objects.
Diff between rbounds versions 0.2 dated 2009-01-28 and 0.3 dated 2009-05-24
DESCRIPTION | 18 ++++++++++-------- R/binarysens.R | 5 ++--- R/hlsens.R | 4 ++-- R/onAttach.R |only R/psens.R | 8 ++++---- man/binarysens.Rd | 4 ++-- man/hlsens.Rd | 4 ++-- man/mcontrol.Rd | 4 ++-- man/psens.Rd | 4 ++-- 9 files changed, 26 insertions(+), 25 deletions(-)
Author: Jim Lemon,Ben Bolker,Sander Oom, Eduardo Klein,Barry
Rowlingson, Hadley Wickham,Anupam Tyagi, Olivier
Eterradossi,Gabor Grothendieck, Michael Toews,John Kane,Mike
Cheetham, Rolf Turner,Carl Witthoft,Julian Stander, Thomas
Petzoldt,Remko Duursma,Elisa Biancotto, Ofir Levy
Title: Various plotting functions
Description: Lots of plots, various labeling, axis and color scaling
functions.
Diff between plotrix versions 2.5-5 dated 2009-05-04 and 2.6 dated 2009-05-24
DESCRIPTION | 8 ++++---- R/brkdn.plot.R | 6 ++++-- R/bumpchart.R | 10 +++++++--- R/color2D.matplot.R | 2 +- R/dispersion.R | 7 ++++++- R/gap.barplot.R | 10 +++++----- R/hierobarp.R | 7 ++++--- R/radial.plot.R | 5 +++-- man/bumpchart.Rd | 10 +++++++++- man/dispersion.Rd | 11 ++++++++--- man/qt.plot.Rd | 8 ++++---- man/radial.plot.Rd | 4 ++++ man/spreadout.Rd | 3 +++ man/thigmophobe.labels.Rd | 11 ++++++----- 14 files changed, 68 insertions(+), 34 deletions(-)
Author: Felix Andrews
Diff between playwith versions 0.9-43 dated 2008-11-16 and 0.9-44 dated 2009-05-24
Title: A GUI for interactive plots using GTK+
Description: A GTK+ graphical user interface for editing and
interacting with R plots.
DESCRIPTION | 33 ++--
NAMESPACE | 4
R/apiIdentify.R | 8
R/gridwork.R | 32 +++
R/parameterControlTool.R | 31 +++
R/playwith.R | 116 +++++---------
R/settings.R | 4
R/uiClickActions.R | 2
R/uiGlobalActions.R | 5
R/uiGrobActions.R | 49 +----
R/uiIdentifyActions.R | 2
R/uiManager.R | 12 +
demo/clusterApp.R | 124 ++++++++-------
demo/lineEqTool.R | 3
demo/pointsTool.R | 2
inst/NEWS | 18 ++
inst/etc/ui.toolbars.xml | 1
man/identifyGrob.Rd |only
man/panel.usertext.Rd | 10 -
man/parameterControlTool.Rd | 5
man/playwith.API.Rd | 362 ++++++++++++++++++++++----------------------
man/playwith.Rd | 90 +++++++---
src |only
23 files changed, 512 insertions(+), 401 deletions(-)
Author: Steven Kembel
Diff between picante versions 0.6-1 dated 2009-03-19 and 0.7-0 dated 2009-05-24
Title: R tools for integrating phylogenies and ecology
Description: Phylocom integration, community analyses, null-models,
traits and evolution in R
picante-0.6-1/picante/man/mnnd.Rd |only
picante-0.6-1/picante/man/ses.mnnd.Rd |only
picante-0.7-0/picante/DESCRIPTION | 10 -
picante-0.7-0/picante/R/phylobeta.R |only
picante-0.7-0/picante/R/phylodiversity.R | 237 ++++++++++++++++-----------
picante-0.7-0/picante/R/pic3.R |only
picante-0.7-0/picante/R/species.dist.R | 6
picante-0.7-0/picante/R/traitgram.R |only
picante-0.7-0/picante/man/comdist.Rd |only
picante-0.7-0/picante/man/comdistnt.Rd |only
picante-0.7-0/picante/man/comm.phylo.cor.Rd | 2
picante-0.7-0/picante/man/comm.phylo.qr.Rd |only
picante-0.7-0/picante/man/mntd.Rd |only
picante-0.7-0/picante/man/mpd.Rd | 9 -
picante-0.7-0/picante/man/pd.Rd | 6
picante-0.7-0/picante/man/pic3.Rd |only
picante-0.7-0/picante/man/picante-package.Rd | 6
picante-0.7-0/picante/man/ses.mntd.Rd |only
picante-0.7-0/picante/man/ses.mpd.Rd | 6
picante-0.7-0/picante/man/traitgram.Rd |only
20 files changed, 175 insertions(+), 107 deletions(-)
Author: Author: Christophe Genolini (and some helpfull readers...)
Title: Toy Pack Classic
Description: This package comes to illustrate the book "Petit Manuel de
Programmation Orientee Objet sous R"
Diff between packClassic versions 0.5 dated 2008-09-19 and 0.5.1 dated 2009-05-24
packClassic-0.5.1/packClassic/DESCRIPTION | 29 +++++----- packClassic-0.5.1/packClassic/NAMESPACE | 2 packClassic-0.5.1/packClassic/R/progClassic.R | 19 +++--- packClassic-0.5.1/packClassic/data/dataAges.rda |binary packClassic-0.5.1/packClassic/man/dataAges.Rd | 16 ++++- packClassic-0.5.1/packClassic/man/packClassic-package.Rd | 40 +++++++------- packClassic-0.5.1/packClassic/man/publicAC.Rd | 20 ++++--- packClassic-0.5.1/packClassic/testsDev/testsProgClassic.R | 25 ++++---- packClassic-0.5/packClassic/DESCRIPTION_EX |only packClassic-0.5/packClassic/Read-and-delete-me |only packClassic-0.5/packClassic/divers |only packClassic-0.5/packClassic/main.R |only packClassic-0.5/packClassic/tests |only 13 files changed, 85 insertions(+), 66 deletions(-)
Author: Jose Pinheiro
Diff between nlme versions 3.1-91 dated 2009-05-04 and 3.1-92 dated 2009-05-24
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear
mixed-effects models.
nlme-3.1-91/nlme/po/R-de.po |only
nlme-3.1-92/nlme/DESCRIPTION | 8
nlme-3.1-92/nlme/INDEX | 186 ++++++++---------
nlme-3.1-92/nlme/inst/po/de |only
nlme-3.1-92/nlme/inst/po/en@quot/LC_MESSAGES/R-nlme.mo |binary
nlme-3.1-92/nlme/inst/po/en@quot/LC_MESSAGES/nlme.mo |binary
nlme-3.1-92/nlme/po/R-en@quot.po | 6
nlme-3.1-92/nlme/po/de.po |only
nlme-3.1-92/nlme/po/en@quot.po | 6
9 files changed, 103 insertions(+), 103 deletions(-)
Author: Alan Genz, Frank Bretz, Tetsuhisa Miwa, Xuefei Mi, Friedrich
Leisch, Fabian Scheipl, Torsten Hothorn
Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities,
quantiles, random deviates and densities.
Diff between mvtnorm versions 0.9-5 dated 2009-03-17 and 0.9-7 dated 2009-05-24
CHANGES | 10 +++++++++- DESCRIPTION | 8 ++++---- R/mvt.R | 6 +++--- inst/CHANGES | 10 +++++++++- inst/doc/MVT_Rnews.pdf |binary src/mvt.f | 6 +++++- 6 files changed, 30 insertions(+), 10 deletions(-)
Author: Paul PONCET
Diff between modeest versions 1.06 dated 2007-03-30 and 1.09 dated 2009-05-24
Title: Mode Estimation
Description: This package provides estimators of the mode of univariate
unimodal data or univariate unimodal distributions. It also
enables to compute the Chernoff distribution.
modeest-1.06/modeest/R/chernoff.R |only
modeest-1.06/modeest/R/dip.R |only
modeest-1.06/modeest/man/Chernoff.Rd |only
modeest-1.06/modeest/man/dip.Rd |only
modeest-1.06/modeest/src/airy.c |only
modeest-1.06/modeest/src/airy.h |only
modeest-1.06/modeest/src/dip.c |only
modeest-1.06/modeest/src/gamma.c |only
modeest-1.06/modeest/src/gamma.h |only
modeest-1.06/modeest/src/integral.c |only
modeest-1.06/modeest/src/integral.h |only
modeest-1.06/modeest/src/integral1.c |only
modeest-1.06/modeest/src/integral2.c |only
modeest-1.06/modeest/src/loggamma.c |only
modeest-1.06/modeest/src/main.c |only
modeest-1.06/modeest/src/main.h |only
modeest-1.06/modeest/src/recipgam.c |only
modeest-1.06/modeest/src/zeroinder.c |only
modeest-1.09/modeest/CHANGES |only
modeest-1.09/modeest/DESCRIPTION | 29 ++++---
modeest-1.09/modeest/INDEX | 17 ++--
modeest-1.09/modeest/NAMESPACE | 2
modeest-1.09/modeest/R/as.numeric.mlv.R |only
modeest-1.09/modeest/R/asselin.R |only
modeest-1.09/modeest/R/distribMode.R | 35 ++++++--
modeest-1.09/modeest/R/mlv.R | 64 ++++++++--------
modeest-1.09/modeest/R/parzen.R | 10 +-
modeest-1.09/modeest/R/tsybakov.R | 11 +-
modeest-1.09/modeest/R/venter.R | 2
modeest-1.09/modeest/doc |only
modeest-1.09/modeest/man/Lientz.Rd | 48 ++++++------
modeest-1.09/modeest/man/asselin.Rd |only
modeest-1.09/modeest/man/discrete.Rd | 8 +-
modeest-1.09/modeest/man/distribMode.Rd | 74 +++++++++---------
modeest-1.09/modeest/man/grenander.Rd | 23 +++--
modeest-1.09/modeest/man/hrm.Rd | 10 +-
modeest-1.09/modeest/man/hsm.Rd | 20 ++---
modeest-1.09/modeest/man/mlv.Rd | 106 +++++++++++++++++----------
modeest-1.09/modeest/man/modeest-package.Rd | 42 +++++-----
modeest-1.09/modeest/man/naive.Rd | 10 +-
modeest-1.09/modeest/man/parzen.Rd | 26 +++---
modeest-1.09/modeest/man/skewness.Rd | 24 +++---
modeest-1.09/modeest/man/tsybakov.Rd | 28 +++----
modeest-1.09/modeest/man/venter.Rd | 30 ++++---
modeest-1.09/modeest/src/half_range_mode.cpp | 4 -
45 files changed, 356 insertions(+), 267 deletions(-)
Author: Daniela M Witten and Robert Tibshirani
Title: Lassoed principal components for testing significance of
features
Description: Implements the LPC method of Witten&Tibshirani(2008) for
identification of significant genes in a microarray experiment.
Diff between lpc versions 1.0 dated 2008-06-11 and 1.0.1 dated 2009-05-24
DESCRIPTION | 12 ++++++--- R/CheckEstimateLPCFDRFormat.R | 5 +++ R/CheckEstimateTFDRFormat.R | 5 +++ R/CheckLPCFormat.R | 5 +++ R/CheckPredictiveAdvantageFormat.R | 5 +++ R/CreateTrainTestSet.R | 12 +++++++-- R/EstimateLPCFDR.R | 8 +++++- R/EstimateTFDR.R | 3 ++ R/GetSoftThresh.R | 3 ++ R/LPC.R | 1 R/PredictiveAdvantage.R | 1 R/PredictiveModel.R | 4 ++- R/multiclass.R |only man/EstimateLPCFDR.Rd | 7 +++-- man/EstimateTFDR.Rd | 14 +++++++--- man/LPC.Rd | 48 ++++++++++++++++++++++++++++++++++--- man/PlotFDRs.Rd | 3 +- man/PredictiveAdvantage.Rd | 15 ++++++----- man/PrintGeneList.Rd | 11 ++++---- 19 files changed, 127 insertions(+), 35 deletions(-)
Author: Douglas Bates
Diff between lme4 versions 0.999375-30 dated 2009-05-12 and 0.999375-31 dated 2009-05-24
Title: Linear mixed-effects models using S4 classes
Description: Fit linear and generalized linear mixed-effects models.
ChangeLog | 8 ++++++++
DESCRIPTION | 10 +++++-----
R/lmer.R | 1 +
3 files changed, 14 insertions(+), 5 deletions(-)
Author: Wolfgang Breymann, David Luethi
Title: A package on the generalized hyperbolic distribution and its
special cases
Description: This package provides detailed functionality for working
with the univariate and multivariate Generalized Hyperbolic
distribution and its special cases (Hyperbolic (hyp), Normal
Inverse Gaussian (NIG), Variance Gamma (VG), skewed Student-t
and Gaussian distribution). Especially, it contains fitting
procedures, an AIC-based model selection routine, and functions
for the computation of density, quantile, probability, random
variates, expected shortfall and some portfolio optimization
and plotting routines as well as the likelihood ratio test. In
addition, it contains the Generalized Inverse Gaussian
distribution.
Diff between ghyp versions 1.5.0 dated 2008-11-27 and 1.5.1 dated 2009-05-24
ChangeLog | 7 DESCRIPTION | 27 Fixme | 7 R/ghypConstructors.R | 24 R/ghypFitting.R | 8 R/ghypGIG.R | 9 R/ghypGenericMethods.R | 111 R/ghypInternals.R | 47 R/ghypMethods.R | 115 R/ghypWrappers.R | 12 inst/doc/Generalized_Hyperbolic_Distribution.Rnw | 431 inst/doc/Generalized_Hyperbolic_Distribution.pdf |58269 +++++++++++------------ inst/doc/ghypCommands.sty | 21 inst/doc/ludabib.bib | 974 man/ghyp-constructors.Rd | 124 man/ghyp-package.Rd | 6 man/ghyp.moment.Rd | 19 17 files changed, 30966 insertions(+), 29245 deletions(-)
Author: Mark Stevenson
Diff between epiR versions 0.9-15 dated 2009-03-31 and 0.9-16 dated 2009-05-24
Title: Functions for analysing epidemiological data
Description: A package for analysing epidemiological data. Contains
functions for directly and indirectly adjusting measures of
disease frequency, quantifying measures of association on the
basis of single or multiple strata of count data presented in a
contingency table, and computing confidence intervals around
incidence risk and incidence rate estimates. Miscellaneous
functions for use in meta-analysis, diagnostic test
interpretation, and sample size calculations.
DESCRIPTION | 8
R/epi.conf.R | 24
R/epi.prev.R | 30
R/epi.simplesize.R | 3
doc/epiR.pdf | 2383 +++++++++++++++++++++++++-------------------------
man/epi.2by2.Rd | 6
man/epi.conf.Rd | 6
man/epi.prev.Rd | 6
man/epi.simplesize.Rd | 16
man/epi.tests.Rd | 2
10 files changed, 1269 insertions(+), 1215 deletions(-)
Author: Tim Keitt
Title: Builds color tables
Description: Builds gradient color maps
Diff between colorRamps versions 2.2 dated 2008-07-05 and 2.3 dated 2009-05-24
DESCRIPTION | 8 +++++--- R/colorRamps.R | 8 ++++---- man/blue2red.Rd | 1 + man/blue2yellow.Rd | 1 + man/colorRamps-package.Rd | 1 + man/matlab.like.Rd | 1 + man/primary.colors.Rd | 1 + man/ramps.Rd | 1 + man/rgb.tables.Rd | 10 ++++++---- 9 files changed, 21 insertions(+), 11 deletions(-)
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams and Chris Keefer
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.15 dated 2009-05-13 and 4.16 dated 2009-05-24
DESCRIPTION | 8 NAMESPACE | 3 R/createGrid.R | 4 R/createModel.R | 36 +- R/filterVarImp.R | 116 +++--- R/misc.R | 23 - R/predictionFunction.R | 5 R/predictors.R | 14 R/probFunction.R | 10 R/selection.R | 6 inst/CHANGES | 11 inst/doc/caretMisc.pdf | 769 ++++++++++++++++++++++---------------------- inst/doc/caretSelection.pdf | 639 ++++++++++++++++++------------------ inst/doc/caretTrain.pdf |binary inst/doc/caretVarImp.pdf |binary 15 files changed, 864 insertions(+), 780 deletions(-)
Author: Hugo Andres Gutierrez Rojas
Diff between TeachingSampling versions 0.7.6 dated 2009-03-14 and 0.8.1 dated 2009-05-24
More information about TeachingSampling at CRAN
Title: Sampling designs and parameter estimation in finite population
Description: Foundations of inference in survey sampling
DESCRIPTION | 6 +++---
R/S.SY.r | 22 ++++++++++++----------
man/S.SY.rd | 8 ++++----
3 files changed, 19 insertions(+), 17 deletions(-)
Permanent link
Author: Rich FitzJohn & Ian Dickie
Title: TRFLP Analysis and Matching Package for R
Description: TRAMPR is an R package for matching terminal restriction
fragment length polymorphism (TRFLP) profiles between unknown
samples and a database of knowns. TRAMPR facilitates analysis
of many unknown profiles at once, and provides tools for
working directly with electrophoresis output through to
generating summaries suitable for community analyses with R's
rich set of statistical functions. TRAMPR also resolves the
issues of multiple TRFLP profiles within a species, and shared
TRFLP profiles across species.
Diff between TRAMPR versions 1.0-4 dated 2007-06-05 and 1.0-5 dated 2009-05-24
TRAMPR-1.0-4/TRAMPR/inst/doc/TRAMPRdemo-012.eps |only TRAMPR-1.0-4/TRAMPR/inst/doc/TRAMPRdemo-012.pdf |only TRAMPR-1.0-4/TRAMPR/inst/doc/TRAMPRdemo-015.eps |only TRAMPR-1.0-4/TRAMPR/inst/doc/TRAMPRdemo-015.pdf |only TRAMPR-1.0-4/TRAMPR/inst/doc/TRAMPRdemo.tex |only TRAMPR-1.0-5/TRAMPR/DESCRIPTION | 36 ++++++++++++------------ TRAMPR-1.0-5/TRAMPR/R/TRAMPknowns.R | 7 +++- TRAMPR-1.0-5/TRAMPR/R/TRAMPsamples.R | 5 +++ TRAMPR-1.0-5/TRAMPR/inst/doc/TRAMPRdemo.pdf |binary TRAMPR-1.0-5/TRAMPR/man/TRAMPindexing.Rd | 4 ++ TRAMPR-1.0-5/TRAMPR/man/TRAMPknowns.Rd | 2 - 11 files changed, 33 insertions(+), 21 deletions(-)
Author: Ann Lee, Diana Luca, Bert Klei, Bernie Devlin, Kathryn Roeder
Title: Discovering Genetic Ancestry Using Spectral Graph Theory
Description: Discovering Genetic Ancestry Using Spectral Graph Theory
Diff between SpectralGEM versions 0.1 dated 2009-03-15 and 0.2 dated 2009-05-24
DESCRIPTION | 8 ++++---- R/Spectral-GEM.R | 18 +++++++++++------- src/RcallOlinux.c | 2 +- src/Rcallexe.c | 2 +- 4 files changed, 17 insertions(+), 13 deletions(-)
Author: Stig Bousgaard Mortensen
Diff between PSM versions 0.8-4 dated 2009-02-25 and 0.8-5 dated 2009-05-24
Title: Non-Linear Mixed-Effects modelling using Stochastic Differential
Equations.
Description: This package provides functions for estimation of linear
and non-linear mixed-effects models using stochastic
differential equations. Moreover it provides functions for
finding smoothed estimates of model states and for simulation.
The package allows for any multivariate non-linear time-variant
model to be specified, and it also handels multidimentional
input, co-variates, missing observations and specification of
dosage regimen.
DESCRIPTION | 26 ++++++++++++++++++--------
R/ModelCheck.R | 6 +++++-
R/PSM.simulate.R | 2 +-
examples/Case_Bioreactor.R | 15 +++++++++++++++
examples/Non-Linear-Deconvolution.R |only
examples/PSM.R |only
examples/PSM2.R |only
examples/PSMvsCTSM-figure1.eps |only
examples/PSMvsCTSM-figure1.pdf |only
examples/PSMvsCTSM-figure2.eps |only
examples/PSMvsCTSM-figure2.pdf |only
examples/PSMvsCTSM.tex |only
examples/RhelpPDF |only
examples/Rplots.ps |only
examples/Rprof1.out |only
examples/derivcheck.R |only
examples/example-isr.R | 10 ++++++++--
examples/example-supersimple.R | 3 ++-
examples/isrsim.png |only
examples/plot-test.R |only
examples/simdose.RData |only
examples/simisr.RData |only
examples/tmp.R |only
inst/doc/PSM.R |only
inst/doc/PSM.dvi |only
inst/doc/PSM.pdf |binary
inst/doc/simdoseold.RData |only
inst/doc/simdoseold2.RData |only
28 files changed, 49 insertions(+), 13 deletions(-)
Author: Lopaka Lee
Title: Nondetects And Data Analysis for environmental data
Description: Contains methods described by Dennis R. Helsel in his book
"Nondetects And Data Analysis: Statistics for Censored
Environmental Data"
Diff between NADA versions 1.5-1 dated 2007-09-27 and 1.5-2 dated 2009-05-24
DESCRIPTION | 14 ++++++++------ NAMESPACE | 3 ++- R/km.R | 6 ------ R/reg.R | 7 +------ R/ros.R | 11 +++++++---- man/Cen.Rd | 2 +- man/NADAList-class.Rd | 2 +- man/cenboxplot.Rd | 2 +- man/cendiff.Rd | 2 +- man/cenfit-class.Rd | 2 +- man/cenfit.Rd | 2 +- man/cenken-class.Rd | 4 ++-- man/cenmle-class.Rd | 2 +- man/cenmle-gaussian-class.Rd | 2 +- man/cenmle-lognormal-class.Rd | 2 +- man/cenmle.Rd | 2 +- man/cenreg-class.Rd | 4 ++-- man/cenreg-gaussian-class.Rd | 2 +- man/cenreg-lognormal-class.Rd | 2 +- man/cenreg.Rd | 2 +- man/censtats.Rd | 2 +- man/censummary.Rd | 2 +- man/cenxyplot.Rd | 2 +- man/cor-methods.Rd | 1 + man/hc.ppoints.Rd | 2 +- man/pctCen.Rd | 2 +- man/ros-class.Rd | 2 +- man/ros.Rd | 2 +- man/splitQual.Rd | 2 +- man/summary.cenreg-class.Rd | 2 +- 30 files changed, 45 insertions(+), 49 deletions(-)
Author: S original by Matt Wand. R port by Brian Ripley
Diff between KernSmooth versions 2.23-1 dated 2009-05-05 and 2.23-2 dated 2009-05-24
Title: Functions for kernel smoothing for Wand & Jones (1995)
Description: functions for kernel smoothing (and density estimation)
corresponding to the book: Wand, M.P. and Jones, M.C. (1995)
"Kernel Smoothing".
DESCRIPTION | 8 ++++----
R/all.R | 2 +-
inst/po/de |only
inst/po/en@quot/LC_MESSAGES/R-KernSmooth.mo |binary
po/R-KernSmooth.pot | 6 +++---
po/R-de.po |only
po/R-en@quot.po | 14 +++++++-------
7 files changed, 15 insertions(+), 15 deletions(-)
Author: Markus Loecher, Sense Networks
Diff between HTMLUtils versions 0.1 dated 2009-05-20 and 0.1.1 dated 2009-05-24
Title: Facilitates automated HTML report creation
Description: Facilitates automated HTML report creation, in particular
framed HTML pages and dynamically sortable tables.
DESCRIPTION | 6 +++---
R/myHTMLInitFile.R | 6 ++++--
man/BasicHTML.Rd | 10 +++++++---
man/FramedHTML.Rd | 10 +++++++---
man/HTMLUtils-package.Rd | 2 +-
5 files changed, 22 insertions(+), 12 deletions(-)