Author: Kurt Hornik, with contributions from Christian Buchta, Torsten
Hothorn, Alexandros Karatzoglou, David Meyer, and Achim Zeileis
Title: R/Weka interface
Description: An R interface to Weka (Version 3.6.0). Weka is a
collection of machine learning algorithms for data mining tasks
written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Both the R interface and Weka itself are
contained in the RWeka package. For more information on Weka
see http://www.cs.waikato.ac.nz/~ml/weka/.
Diff between RWeka versions 0.3-17 dated 2009-04-29 and 0.3-18 dated 2009-05-28
CHANGELOG | 4 ++++ DESCRIPTION | 8 ++++---- NAMESPACE | 3 ++- R/control.R | 13 +++++++++---- R/tokenizers.R | 4 +++- R/zzz.R | 27 ++++++++++++++++++++++----- inst/CITATION | 33 ++++++++++++++------------------- man/WOW.Rd | 5 +++++ man/Weka_classifier_lazy.Rd | 2 +- man/Weka_classifier_meta.Rd | 6 ++++++ man/Weka_classifier_trees.Rd | 2 +- man/Weka_clusterers.Rd | 2 +- man/Weka_interfaces.Rd | 5 +++++ man/read.arff.Rd | 2 +- man/write.arff.Rd | 2 +- 15 files changed, 79 insertions(+), 39 deletions(-)
Author: Duncan Temple Lang
Title: General network (HTTP/FTP/...) client interface for R
Description: The package allows one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Diff between RCurl versions 0.95-1 dated 2009-05-18 and 0.97-3 dated 2009-05-28
Changes.html | 76 + CodeGeneration/foo.html |only CodeGeneration/generate.R | 89 + CodeGeneration/generateDocs.R |only DESCRIPTION | 10 NAMESPACE | 6 R/aclassesEnums.R |only R/curlEnums.R |only R/dynamic.R | 8 R/form.S | 2 R/options.S | 23 R/xbits.R |only configure | 2185 ++++++++++++++++++++++++++++++++++++++++++ configure.in | 64 + inst/CurlSSL |only inst/doc/cookies.xml |only inst/doc/fileUploads.html |only inst/doc/fileUploads.pdf |only man/HTTP_VERSION_1_0.Rd |only man/curlOptions.Rd | 10 man/dynCurlReader.Rd | 2 man/enums.Rd |only man/getURL.Rd | 7 src/CURLINFOTable.h |only src/CURLOptTable.h |only src/CurlInfoEnums.h | 5 src/CurlOptEnums.h | 10 src/Makevars | 2 src/curl.c | 56 + 29 files changed, 2538 insertions(+), 17 deletions(-)
Author: Christophe Ambroise
Diff between simone versions 0.1-2 dated 2009-02-23 and 0.1-3 dated 2009-05-28
Title: Statistical Inference for MOdular NEtworks (SIMoNe)
Description: The SIMoNe algorithm iteratively combines edge estimation
and node classification on the basis of a mixture model for
edge weight distributions. Edges inference may be managed via
two alternative methods: GLasso and Meinhausan-Buhlman's
approach. Node Classification is managed by MixNet, a mixture
model for random graphs.
DESCRIPTION | 22 ++++++++++++++++------
NEWS | 3 +++
src/JRx_.cpp | 2 +-
src/matrix.h | 4 ++--
4 files changed, 22 insertions(+), 9 deletions(-)
Author: Matthew Denwood
Diff between runjags versions 0.9.3-3 dated 2009-01-08 and 0.9.4-2 dated 2009-05-28
Title: Run Bayesian MCMC Models in the BUGS syntax from Within R
Description: A set of functions to allow any user specified model to be
run in JAGS from within R, returning the MCMC chains as R
objects. Includes functions to read external WinBUGS type
textfiles, and allows several ways of automatically specifying
model data from existing R objects or R functions. Also
includes functions to automatically calculate model run length,
autocorrealtion and Gelman Rubin statistic diagnostics for all
models to simplify the process of achieving chain convergence.
Designed for maximum compatibility with WinBUGS syntax,
although minor modification to existing .bug files will be
required. Requires Just Another Gibbs Sampler (JAGS) for most
functions, see: http://www-fis.iarc.fr/~martyn/software/jags/
DESCRIPTION | 24 +++++++++++++++++++-----
R/autorun.jags.R | 4 ++--
R/combine.mcmc.R | 26 +++++++++++++++++++-------
R/dump.format.R | 12 ++++++++++--
R/invisible.R | 18 +++++++++---------
R/timestring.R | 3 ++-
inst/CITATION | 2 +-
inst/version_history.txt | 28 ++++++++++++++++++++++++++++
man/autorun.jags.Rd | 7 +++++--
man/combine.mcmc.Rd | 2 +-
man/dump.format.Rd | 4 +++-
man/run.jags.Rd | 10 +++++-----
12 files changed, 104 insertions(+), 36 deletions(-)
Author: Jelle Goeman
Diff between penalized versions 0.9-23 dated 2009-03-12 and 0.9-24 dated 2009-05-28
Title: L1 (lasso) and L2 (ridge) penalized estimation in GLMs and in
the Cox model
Description: A package for fitting possibly high dimensional penalized
regression models. The penalty structure can be any combination
of an L1 penalty (lasso), an L2 penalty (ridge) and a
positivity constraint on the regression coefficients. The
supported regression models are linear, logistic and poisson
regression and the Cox Proportional Hazards model.
Cross-validation routines allow optimization of the tuning
parameters.
DESCRIPTION | 10
R/cvl.R | 116
R/penfit.R | 4
changelog.txt | 6
inst/CITATION |only
inst/doc/Rplots.pdf |13166 +++++++++++++++++++++++--------------------------
inst/doc/penalized.Rnw | 2
inst/doc/penalized.bib | 11
inst/doc/penalized.pdf |binary
man/penfit.Rd | 2
10 files changed, 6503 insertions(+), 6814 deletions(-)
Author: Torsten Hothorn, Achim Zeileis, Giovanni Millo, David Mitchell
Title: Testing Linear Regression Models
Description: A collection of tests, data sets and examples for
diagnostic checking in linear regression models.
Diff between lmtest versions 0.9-23 dated 2009-02-05 and 0.9-24 dated 2009-05-28
COPYRIGHTS | 2 +- DESCRIPTION | 12 +++++++----- NAMESPACE | 1 + NEWS | 7 +++++++ R/coxtest.R | 2 +- R/jtest.R | 2 +- R/petest.R |only inst/doc/lmtest-intro.pdf |binary man/petest.Rd |only 9 files changed, 18 insertions(+), 8 deletions(-)
Author: Edzer J. Pebesma
Diff between sp versions 0.9-36 dated 2009-04-29 and 0.9-37 dated 2009-05-28
Title: classes and methods for spatial data
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location
information resides, for 2D or 3D data. Utility functions are
provided, e.g. for plotting data as maps, spatial selection, as
well as methods for retrieving coordinates, for subsetting,
print, summary, etc.
DESCRIPTION | 8
R/SpatialGridDataFrame-methods.R | 5
inst/doc/sp.pdf | 3595 +++++++++++++++++++--------------------
rlabs |only
tests/fail1.Rout.save | 10
tests/spplot.Rout.save | 15
6 files changed, 1836 insertions(+), 1797 deletions(-)
Author: Uwe Ligges
Diff between scatterplot3d versions 0.3-27 dated 2008-05-08 and 0.3-28 dated 2009-05-28
Title: 3D Scatter Plot
Description: Plots a three dimensional (3D) point cloud.
CHANGES | 3
DESCRIPTION | 24
R/scatterplot3d.R | 2
inst/doc/SFBs3d_Examples.tex | 8
inst/doc/s3d.pdf | 3694 +++++++++++++++++++++----------------------
5 files changed, 1842 insertions(+), 1889 deletions(-)
Author: Jonathan P. Weeks
Diff between plink versions 1.1-0 dated 2009-05-15 and 1.1-1 dated 2009-05-28
Title: IRT Separate Calibration Linking Methods
Description: This package uses item response theory methods to compute
linking constants and conduct chain linking of unidimensional
or multidimensional tests for multiple groups under a
nonequivalent groups common item design. The unidimensional
methods include the Mean/Mean, Mean/Sigma, Haebara, and
Stocking-Lord methods for dichotomous (1PL, 2PL and 3PL) and/or
polytomous (graded response, partial credit/generalized partial
credit, nominal, and multiple-choice model) items. The
multidimensional methods include the Reckase-Martineau method
and extensions of the Haebara and Stocking-Lord method using a
single dilation parameter, multiple dilation parameters, or the
Oshima, Davey, & Lee approach for multidimensional extensions
of all the unidimensional dichotomous and polytomous item
response models. The package also includes functions for
importing item and/or ability parameters from common IRT
software and ploting item characteristic/category curves or
surfaces and vector plots.
DESCRIPTION | 6 +++---
R/drm.R | 2 +-
R/gpcm.R | 2 +-
R/grm.R | 2 +-
R/mcm.R | 2 +-
R/mixed.R | 2 +-
R/nrm.R | 2 +-
R/read.bilog.R | 16 +++++++++++-----
inst/CITATION | 4 ++--
inst/NEWS | 9 +++++++++
10 files changed, 31 insertions(+), 16 deletions(-)
Author: Brian Lee Yung Rowe
Title: Futile function utilities
Description: A collection of utility functions to expedite software
development
Diff between futile versions 1.0 dated 2009-04-15 and 1.0.2 dated 2009-05-28
DESCRIPTION | 8 ++++---- R/general.R | 23 ++++++++++++++++++++--- man/anytypes.Rd |only man/futile-package.Rd | 19 +++++++++++++++---- man/mid.Rd | 14 +++++++------- 5 files changed, 46 insertions(+), 18 deletions(-)
Author: Mathieu Ribatet
Diff between SpatialExtremes versions 1.2-0 dated 2009-04-20 and 1.3-0 dated 2009-05-28
More information about SpatialExtremes at CRAN
Title: Modelling Spatial Extremes
Description: This package proposes several approaches for spatial
extremes modelling.
ChangeLog | 170
DESCRIPTION | 10
R/covariance.R | 30
R/fitcovmat.R | 76
R/geomgauss.R | 134
R/madogram.R | 189
R/methods.R | 3
R/nsgeomgauss.R | 64
R/plots.R | 17
R/profile.R | 16
R/randomlines.R |only
R/schlather.R | 74
R/schlatherind.R | 72
R/selection.R | 8
R/simgaussproc.R |only
R/simmaxstab.R |only
R/smith.R | 71
R/spatgev.R | 68
R/starting.values.R | 10
inst/doc/SpatialExtremesGuide.Rnw | 663
inst/doc/SpatialExtremesGuide.pdf |893427 +++++++++++++++++++++++++++++++++++---
inst/doc/layout.sty | 20
inst/doc/references.bib | 184
man/TIC.Rd | 18
man/anova.Rd | 15
man/condmap.Rd | 19
man/covariance.Rd | 73
man/extcoeff.Rd | 9
man/extcoeffemp.Rd | 14
man/fitcovariance.Rd | 26
man/fitcovmat.Rd | 25
man/fitmaxstab.Rd | 58
man/fitspatgev.Rd | 14
man/fmadogram.Rd | 19
man/lmadogram.Rd | 8
man/logLik.maxstab.Rd | 12
man/madogram.Rd | 20
man/map.Rd | 15
man/predict.maxstab.Rd | 16
man/predict.spatgev.Rd | 15
man/print.maxstab.Rd | 13
man/print.spatgev.Rd | 16
man/profile.maxstab.Rd | 20
man/profile2d.maxstab.Rd | 21
man/qqextcoeff.Rd | 13
man/qqgev.Rd | 15
man/rgp.Rd |only
man/simmaxstab.Rd |only
man/vdc.Rd |only
src/Makevars |only
src/covariance.c | 63
src/direct.c |only
src/fitcovmat.c | 14
src/geomgauss.c | 8
src/gradients.c | 66
src/header.h | 76
src/nsgeomgauss.c | 8
src/pairwiselik.c | 258
src/randomlines.c |only
src/schlather.c | 18
src/schlatherind.c | 10
src/simschlather.c |only
src/simsmith.c |only
src/smith.c | 10
src/smith3d.c | 6
src/turningbands.c |only
src/utils.c | 2
67 files changed, 845327 insertions(+), 50992 deletions(-)
Permanent link
Author: Richard M. Heiberger
Title: Statistical Analysis and Data Display: Heiberger and Holland
Description: Support software for Statistical Analysis and Data Display
(Springer, ISBN 0-387-40270-5). This contemporary presentation
of statistical methods features extensive use of graphical
displays for exploring data and for displaying the analysis.
The authors demonstrate how to analyze data---showing code,
graphics, and accompanying computer listings---for all the
methods they cover. They emphasize how to construct and
interpret graphs, discuss principles of graphical design, and
show how accompanying traditional tabular results are used to
confirm the visual impressions derived directly from the
graphs. Many of the graphical formats are novel and appear here
for the first time in print. All chapters have exercises.
Diff between HH versions 2.1-28 dated 2009-05-25 and 2.1-29 dated 2009-05-28
DESCRIPTION | 8 ++--- R/panel.bwplot.intermediate.hh.R | 8 ++++- R/panel.interaction2wt.R | 25 +++++++++++++++ man/panel.interaction2wt.Rd | 62 +++++++++++++++++++++++++++++++++++---- 4 files changed, 91 insertions(+), 12 deletions(-)