Author: Duncan Temple Lang (duncan@wald.ucdavis.edu)
Title: Tools for parsing and generating XML within R and S-Plus.
Description: This package provides many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. It also offers access to an
XPath "interpreter".
Diff between XML versions 2.3-0 dated 2009-03-06 and 2.5-0 dated 2009-06-02
XML-2.3-0/XML/src/catalog.c |only XML-2.5-0/XML/Changes | 29 + XML-2.5-0/XML/DESCRIPTION | 70 +--- XML-2.5-0/XML/INSTALL | 2 XML-2.5-0/XML/NAMESPACE | 54 ++- XML-2.5-0/XML/R/XMLClasses.R | 52 ++- XML-2.5-0/XML/R/error.R | 2 XML-2.5-0/XML/R/htmlParse.R | 10 XML-2.5-0/XML/R/libxmlFeatures.R |only XML-2.5-0/XML/R/namespaces.R |only XML-2.5-0/XML/R/nodeAccessors.R | 2 XML-2.5-0/XML/R/parseDTD.R | 4 XML-2.5-0/XML/R/parser.R |only XML-2.5-0/XML/R/readHTMLTable.R |only XML-2.5-0/XML/R/saveXML.R |only XML-2.5-0/XML/R/schema.S | 2 XML-2.5-0/XML/R/tree.R | 19 - XML-2.5-0/XML/R/version.R | 4 XML-2.5-0/XML/R/xmlEventParse.R | 2 XML-2.5-0/XML/R/xmlInternalSource.R | 19 + XML-2.5-0/XML/R/xmlNodes.R | 174 +++------- XML-2.5-0/XML/R/xmlString.R |only XML-2.5-0/XML/R/xmlTreeParse.R | 29 - XML-2.5-0/XML/configure | 165 ++++++++- XML-2.5-0/XML/configure.in | 55 ++- XML-2.5-0/XML/configure.win | 7 XML-2.5-0/XML/inst/exampleData/cleanNamespace.xml |only XML-2.5-0/XML/inst/exampleData/entity1.xml | 2 XML-2.5-0/XML/inst/exampleData/entity3.html |only XML-2.5-0/XML/inst/exampleData/entity4.xml |only XML-2.5-0/XML/inst/exampleData/namespaces2.xml |only XML-2.5-0/XML/inst/exampleData/xinclude |only XML-2.5-0/XML/inst/expat |only XML-2.5-0/XML/inst/libxml |only XML-2.5-0/XML/man/XMLInternalDocument.Rd | 1 XML-2.5-0/XML/man/addChildren.Rd | 1 XML-2.5-0/XML/man/getXMLErrors.Rd | 2 XML-2.5-0/XML/man/isXMLString.Rd |only XML-2.5-0/XML/man/libxmlVersion.Rd | 33 + XML-2.5-0/XML/man/newXMLDoc.Rd | 14 XML-2.5-0/XML/man/readHTMLTable.Rd |only XML-2.5-0/XML/man/removeXMLNamespaces.Rd |only XML-2.5-0/XML/man/saveXML.Rd | 6 XML-2.5-0/XML/man/supportsExpat.Rd | 2 XML-2.5-0/XML/man/xmlEventParse.Rd | 19 + XML-2.5-0/XML/man/xmlParseDoc.Rd |only XML-2.5-0/XML/man/xmlSource.Rd | 1 XML-2.5-0/XML/man/xmlTreeParse.Rd | 9 XML-2.5-0/XML/src/DocParse.c | 149 ++++++++ XML-2.5-0/XML/src/DocParse.h | 10 XML-2.5-0/XML/src/HTMLParse.c | 2 XML-2.5-0/XML/src/Makevars.in | 2 XML-2.5-0/XML/src/RS_XML.h | 3 XML-2.5-0/XML/src/RUtils.c | 12 XML-2.5-0/XML/src/Rcatalog.c |only XML-2.5-0/XML/src/Utils.c | 35 +- XML-2.5-0/XML/src/Utils.h | 2 XML-2.5-0/XML/src/XMLEventParse.c | 2 XML-2.5-0/XML/src/XMLTree.c | 379 +++++++++++++++++++++- XML-2.5-0/XML/src/libxmlFeatures.c |only XML-2.5-0/XML/src/xmlsecurity.c |only XML-2.5-0/XML/src/xpath.c | 24 + 62 files changed, 1128 insertions(+), 283 deletions(-)
Author: Daniel B. Wright
Title: Signal detection theory and alternatives
Description: Signal detection theory and alternatives
Diff between sdtalt versions 0.1-0.1 dated 2009-02-23 and 1.0-1 dated 2009-06-02
sdtalt-0.1-0.1/sdtalt/data/ayers.rda |only sdtalt-0.1-0.1/sdtalt/data/memrec.rda |only sdtalt-0.1-0.1/sdtalt/man/ayers.Rd |only sdtalt-0.1-0.1/sdtalt/man/memrec.Rd |only sdtalt-1.0-1/sdtalt/DESCRIPTION | 29 +++++-------- sdtalt-1.0-1/sdtalt/R/mlmsdt.R | 66 +++++++++++++----------------- sdtalt-1.0-1/sdtalt/R/sdt.R | 13 ++--- sdtalt-1.0-1/sdtalt/man/confcontr.Rd | 9 +--- sdtalt-1.0-1/sdtalt/man/confexp.Rd | 6 +- sdtalt-1.0-1/sdtalt/man/face4.Rd | 7 +-- sdtalt-1.0-1/sdtalt/man/face4b.Rd | 6 +- sdtalt-1.0-1/sdtalt/man/face4w.Rd | 6 +- sdtalt-1.0-1/sdtalt/man/facec.Rd | 7 +-- sdtalt-1.0-1/sdtalt/man/fne.Rd | 4 - sdtalt-1.0-1/sdtalt/man/format2to4.Rd | 8 +-- sdtalt-1.0-1/sdtalt/man/format4to2.Rd | 6 +- sdtalt-1.0-1/sdtalt/man/mlmsdt.Rd | 26 +++++------ sdtalt-1.0-1/sdtalt/man/sdt.Rd | 52 +++++++++++------------ sdtalt-1.0-1/sdtalt/man/sdtalt-package.Rd | 17 ++++--- 19 files changed, 123 insertions(+), 139 deletions(-)
Author: Martin Elff
Title: Tools for Management of Survey Data, Graphics, Programming,
Statistics, and Simulation
Description: One of the aims of this package is to make life easier for
useRs who deal with survey data sets. It provides an
infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) SPSS and
Stata files. Further, it provides functionality to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates. Also some convenience tools for graphics,
programming, and simulation are provided.
Diff between memisc versions 0.95-18 dated 2009-06-02 and 0.95-19 dated 2009-06-02
DESCRIPTION | 6 +++--- R/item-methods.R | 14 +++++++------- inst/NEWS | 10 ++++++---- inst/doc/anes48.pdf |binary 4 files changed, 16 insertions(+), 14 deletions(-)
Author: Ann Lee, Diana Luca, Bert Klei, Bernie Devlin, Kathryn Roeder
Title: Discovering Genetic Ancestry Using Spectral Graph Theory
Description: Discovering Genetic Ancestry Using Spectral Graph Theory
Diff between SpectralGEM versions 0.2 dated 2009-05-24 and 0.2.1 dated 2009-06-02
DESCRIPTION | 6 +++--- R/Spectral-GEM.R | 5 +++-- 2 files changed, 6 insertions(+), 5 deletions(-)
Author: Jonathan M. Lees
Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to analyze seismic data, via,
spectrum analysis, wavelet transforms, particle motion,
hodograms.
Diff between RSEIS versions 2.1-4 dated 2009-03-16 and 2.1-6 dated 2009-06-02
DESCRIPTION | 6 +-- R/CHOP.SEISN.R | 6 +++ R/DISPLACE.SEISN.R | 3 + R/FILT.SEISN.R | 8 ++++- R/Mine.seis.R | 12 +++++-- R/PICK.GEN.R | 7 +++- R/PLOT.SEISN.R | 2 + R/SEISNtime.R | 22 +++++++++++++- R/VELOCITY.SEISN.R | 3 + R/ZOOM.SEISN.R | 2 + R/attime12.R |only R/butfilt.R | 19 +++++++++--- R/choosfilt.R | 40 ++++++++++++++++++++++++-- R/distseisnXY.R |only R/filedatetime.R | 12 +++++-- R/filterstamp.R |only R/makeDB.R | 4 +- R/matsquiggle.R |only R/pickhandler.R | 3 + R/rangedatetime.R |only R/setwpix.R |only R/setypx.R |only R/varsquig.R | 12 ++++--- R/varsquiggle.R | 77 +++++++++++++++++++++++++++++++++++++++------------ R/view.seis.R | 54 ++++++++++++++++++++++++++++++++++- R/xtract.trace.R |only inst/doc/hodo.pdf |binary inst/doc/rseis.pdf |binary man/Mine.seis.Rd | 4 +- man/PICK.GEN.Rd | 11 +++++-- man/RSEIS-package.Rd | 4 +- man/attime12.Rd |only man/butfilt.Rd | 19 ++++++++---- man/distseisnXY.Rd |only man/filterstamp.Rd |only man/matsquiggle.Rd |only man/rangedatetime.Rd |only man/setwpix.Rd |only man/setypx.Rd |only man/varsquig.Rd | 11 +++---- man/varsquiggle.Rd | 16 ++++++++-- man/view.seis.Rd | 41 +++++++++++++++++++++++++++ man/xtract.trace.Rd |only src/sac.h | 2 - 44 files changed, 330 insertions(+), 70 deletions(-)
Author: Jonathan M. Lees
Title: Topographic and Geologic Mapping
Description: Set of routines for making Map Projections (forward and
inverse), Topographic Maps, Perspective plots, Geological Maps,
geological map symbols, geological databases, interactive
plotting and selection of focus regions.
Diff between GEOmap versions 1.4-0 dated 2009-01-08 and 1.4-2 dated 2009-06-02
DESCRIPTION | 11 +++++++-- R/GLOB.XY.R | 8 +++++++ R/Lll2xyz.R |only R/Lxyz2ll.R |only R/NSarrow.R |only R/X.prod.R |only R/XY.GLOB.R | 4 +++ R/along.great.R |only R/distaz.R |only R/dms.R |only R/getgreatarc.R | 57 ++++++++++++++------------------------------------ R/getnicetix.R |only R/getsplineG.R |only R/gmat.R |only R/goodticdivs.R |only R/ll2xyz.R |only R/maps2GEOmap.R |only R/niceLLtix.R |only R/plotnicetix.R |only R/plotusa.R | 13 +++++++---- R/rotateGEOmap.R |only R/rotdelta4.R |only R/rotmat2D.R |only R/rotx4.R |only R/roty4.R |only R/setPROJ.R | 15 +++++++++---- R/trans4.R |only R/utm.wgs84.ll.R |only R/utm.wgs84.xy.R |only R/xyz2ll.R |only demo/weathermap.R | 8 +++---- inst/doc/GEOmap.pdf |binary man/GEOmap-package.Rd | 4 +-- man/Lll2xyz.Rd |only man/Lxyz2ll.Rd |only man/Markup.Rd | 7 +++++- man/NSarrow.Rd |only man/SynAnticline.Rd | 2 - man/X.prod.Rd |only man/along.great.Rd |only man/distaz.Rd |only man/dms.Rd |only man/faultdip.Rd | 4 +-- man/faultperp.Rd | 2 - man/getgreatarc.Rd | 2 - man/getnicetix.Rd |only man/getsplineG.Rd |only man/gmat.Rd |only man/goodticdivs.Rd |only man/horseshoe.Rd | 4 +-- man/ll2xyz.Rd |only man/maps2GEOmap.Rd |only man/niceLLtix.Rd |only man/perpen.Rd | 2 - man/plotnicetix.Rd |only man/plotusa.Rd | 12 +++++++++- man/rotateGEOmap.Rd |only man/rotdelta4.Rd |only man/rotmat2D.Rd |only man/rotx4.Rd |only man/roty4.Rd |only man/setMarkup.Rd | 6 ++++- man/trans4.Rd |only man/utm.sphr.ll.Rd | 1 man/utm.sphr.xy.Rd | 1 man/xyz2ll.Rd |only 66 files changed, 95 insertions(+), 68 deletions(-)
Author: William Revelle
Diff between psych versions 1.0-70 dated 2009-05-25 and 1.0-72 dated 2009-06-02
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A number of routines for personality, psychometrics and
experimental psychology. Functions are primarily for scale
construction using factor analysis, cluster analysis and
reliability analysis, although others provide basic descriptive
statistics. Functions for simulating particular item and test
structures are included. Several functions serve as a useful
front end for structural equation modeling. For more
information, see the personality-project.org/r webpage.
psych-1.0-70/psych/man/factor.pa.Rd |only
psych-1.0-72/psych/CHANGES | 11
psych-1.0-72/psych/DESCRIPTION | 8
psych-1.0-72/psych/NAMESPACE | 5
psych-1.0-72/psych/R/VSS.R | 6
psych-1.0-72/psych/R/fa.R |only
psych-1.0-72/psych/R/factor.minres.R | 1
psych-1.0-72/psych/R/factor.pa.R | 17
psych-1.0-72/psych/R/factor.scores.R |only
psych-1.0-72/psych/R/factor.stats.R | 3
psych-1.0-72/psych/R/factor.wls.R |only
psych-1.0-72/psych/R/omega.R | 6
psych-1.0-72/psych/R/phi.demo.R | 9
psych-1.0-72/psych/R/poly.mat.R | 2
psych-1.0-72/psych/R/polychor.matrix.R | 6
psych-1.0-72/psych/R/polycor.matrix.R | 2
psych-1.0-72/psych/R/principal.R | 2
psych-1.0-72/psych/R/print.psych.R | 269 -
psych-1.0-72/psych/R/print.psych.fa.R |only
psych-1.0-72/psych/R/print.psych.iclust.R |only
psych-1.0-72/psych/R/print.psych.omega.R |only
psych-1.0-72/psych/R/print.psych.stats.R |only
psych-1.0-72/psych/R/print.psych.vss.R |only
psych-1.0-72/psych/R/schmid.R | 9
psych-1.0-72/psych/R/smc.R | 2
psych-1.0-72/psych/R/test.psych.r | 6
psych-1.0-72/psych/inst/NEWS | 23
psych-1.0-72/psych/inst/doc/overview.pdf | 4378 +++++++++++++-------------
psych-1.0-72/psych/inst/doc/psych_for_sem.pdf | 4099 ++++++++++++------------
psych-1.0-72/psych/man/00.psych-package.Rd | 9
psych-1.0-72/psych/man/VSS.Rd | 2
psych-1.0-72/psych/man/fa.Rd |only
psych-1.0-72/psych/man/factor.stats.Rd | 7
psych-1.0-72/psych/man/omega.Rd | 4
psych-1.0-72/psych/man/phi.demo.Rd | 12
psych-1.0-72/psych/man/poly.mat.Rd | 4
psych-1.0-72/psych/man/polychor.matrix.Rd | 5
psych-1.0-72/psych/man/schmid.Rd | 2
38 files changed, 4431 insertions(+), 4478 deletions(-)
Author: Reinhold Hatzinger
Title: Utilities to fit paired comparison models for preferences
Description: Generates design matrix for analysing real paired
comparisons and derived paired comparison data (Likert type
items / ratings or rankings) using a loglinear approach. Fits
loglinear Bradley-Terry model (LLBT) exploting an eliminate
feature. Computes pattern models for paired comparisons,
rankings, and ratings. Some treatment of missing values (MCAR
and MNAR).
Diff between prefmod versions 0.8-14 dated 2009-04-16 and 0.8-15 dated 2009-06-02
DESCRIPTION | 12 ++++++------ NAMESPACE | 2 +- R/covdesign.R | 7 +++++-- R/llbt.worth.R | 24 +++++++----------------- R/patt.worth.R | 26 ++++++++------------------ R/plotworth.R | 15 +++++++++------ R/splitCovs.R | 30 +++++++++++++++++++----------- man/plotworth.Rd | 13 +++++++------ man/prefmod-package.Rd | 4 ++-- man/salad.Rd | 8 ++++---- 10 files changed, 68 insertions(+), 73 deletions(-)
Author: Jonathan P. Weeks
Diff between plink versions 1.1-1 dated 2009-05-28 and 1.1-2 dated 2009-06-02
Title: IRT Separate Calibration Linking Methods
Description: This package uses item response theory methods to compute
linking constants and conduct chain linking of unidimensional
or multidimensional tests for multiple groups under a
nonequivalent groups common item design. The unidimensional
methods include the Mean/Mean, Mean/Sigma, Haebara, and
Stocking-Lord methods for dichotomous (1PL, 2PL and 3PL) and/or
polytomous (graded response, partial credit/generalized partial
credit, nominal, and multiple-choice model) items. The
multidimensional methods include the Reckase-Martineau method
and extensions of the Haebara and Stocking-Lord method using a
single dilation parameter, multiple dilation parameters, or the
Oshima, Davey, & Lee approach for multidimensional extensions
of all the unidimensional dichotomous and polytomous item
response models. The package also includes functions for
importing item and/or ability parameters from common IRT
software and ploting item characteristic/category curves or
surfaces and vector plots.
DESCRIPTION | 8 +++----
R/plot.R | 55 +++++++++++++++++++++++++++++++++++++++------------
R/read.bilog.R | 7 ++----
R/sep.pars.R | 14 +++++++++++-
inst/CITATION | 4 +--
inst/NEWS | 29 ++++++++++++++++++++------
man/plot.irt.prob.Rd | 4 +--
7 files changed, 88 insertions(+), 33 deletions(-)
Author: Robert B. Gramacy
Diff between monomvn versions 1.7-1 dated 2009-05-27 and 1.7-2 dated 2009-06-02
Title: Estimation for multivariate normal and Student-t data with
monotone missingness
Description: Estimation of multivariate normal and student-t data of
arbitrary dimension where the pattern of missing data is
monotone. Through the use of parsimonious/shrinkage regressions
(plsr, pcr, lasso, ridge, etc.), where standard regressions
fail, the package can handle a nearly arbitrary amount of
missing data. The current version supports maximum likelihood
inference and a full Bayesian approach employing scale-mixtures
for the lasso (double-exponential) prior and Student-t errors.
Monotone data augmentation extends this Bayesian approach to
arbitrary missingness patterns. A fully functional standalone
interface to the Bayesian lasso (from Park & Casella) and ridge
regression with model selection via Reversible Jump, and
student-t errors (from Geweke) is also provided
ChangeLog | 8 ++++++++
DESCRIPTION | 8 ++++----
src/blasso.cc | 42 +++++++++++++++++++++++++-----------------
src/matrix.c | 42 +++++++++++++++++++++++++++++++++++++++++-
src/matrix.h | 2 ++
5 files changed, 80 insertions(+), 22 deletions(-)
Author: Martin Elff
Title: Tools for Management of Survey Data, Graphics, Programming,
Statistics, and Simulation
Description: One of the aims of this package is to make life easier for
useRs who deal with survey data sets. It provides an
infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) SPSS and
Stata files. Further, it provides functionality to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates. Also some convenience tools for graphics,
programming, and simulation are provided.
Diff between memisc versions 0.95-17 dated 2009-03-06 and 0.95-18 dated 2009-06-02
DESCRIPTION | 32 +++++++++++++++++++------------- R/sample_methods.R | 6 +++--- inst/NEWS |only inst/doc/anes48.pdf |binary 4 files changed, 22 insertions(+), 16 deletions(-)
Author: J. O. Ramsay
Diff between fda versions 2.1.1 dated 2009-03-02 and 2.1.2 dated 2009-06-02
Title: Functional Data Analysis
Description: These functions were developed to support functional data
analysis as described in Ramsay, J. O. and Silverman, B. W.
(2005) Functional Data Analysis. New York: Springer. They were
ported from earlier versions in Matlab and S-PLUS. An
introduction appears in Ramsay, J. O., Hooker, Giles, and
Graves, Spencer (2009) Functional Data Analysis with R and
Matlab (Springer). The package includes data sets and script
files working many examples including all but one of the 76
figures in this latter book.
fda-2.1.1/fda/R/as.function.fd.R |only
fda-2.1.1/fda/R/dim.fd.R |only
fda-2.1.1/fda/inst/scripts/CSTR/CSTR_demo.asv |only
fda-2.1.1/fda/inst/scripts/CSTR/CSTRfn.asv |only
fda-2.1.1/fda/inst/scripts/fda-ch19.R |only
fda-2.1.1/fda/man/as.function.fd.Rd |only
fda-2.1.1/fda/man/dim.fd.Rd |only
fda-2.1.2/fda/DESCRIPTION | 51
fda-2.1.2/fda/NEWS | 10
fda-2.1.2/fda/R/AmpPhaseDecomp.R | 48
fda-2.1.2/fda/R/cca.fd.R | 9
fda-2.1.2/fda/R/eval.fd.R | 4
fda-2.1.2/fda/R/eval.monfd.R | 53
fda-2.1.2/fda/R/fRegress.fdPar.R | 576 ++++----
fda-2.1.2/fda/R/inprod.R | 32
fda-2.1.2/fda/R/landmarkreg.R | 44
fda-2.1.2/fda/R/linmod.R | 378 +++--
fda-2.1.2/fda/R/plot.fd.R | 8
fda-2.1.2/fda/R/register.fd.R | 148 +-
fda-2.1.2/fda/R/register.newfd.R | 2
fda-2.1.2/fda/data/CanadianWeather.rda |binary
fda-2.1.2/fda/data/handwrit.rda |binary
fda-2.1.2/fda/data/seabird.rda |only
fda-2.1.2/fda/inst/Matlab/additions |only
fda-2.1.2/fda/inst/Matlab/fdaM/@fd/center.m | 8
fda-2.1.2/fda/inst/Matlab/fdaM/@fd/deriv.m | 18
fda-2.1.2/fda/inst/Matlab/fdaM/@fd/display.m | 12
fda-2.1.2/fda/inst/Matlab/fdaM/@fd/getfdlabels.m |only
fda-2.1.2/fda/inst/Matlab/fdaM/@fd/line.m | 35
fda-2.1.2/fda/inst/Matlab/fdaM/@fd/mean.m | 24
fda-2.1.2/fda/inst/Matlab/fdaM/@fd/plot.m | 89 -
fda-2.1.2/fda/inst/Matlab/fdaM/@fd/subsref.m | 35
fda-2.1.2/fda/inst/Matlab/fdaM/Fperm_fd.m |only
fda-2.1.2/fda/inst/Matlab/fdaM/Fstat_fd.m |only
fda-2.1.2/fda/inst/Matlab/fdaM/eigen_pda.m |only
fda-2.1.2/fda/inst/Matlab/fdaM/examples/handwrit/handwrit.asv | 18
fda-2.1.2/fda/inst/Matlab/fdaM/examples/handwrit/handwrit.m | 18
fda-2.1.2/fda/inst/Matlab/fdaM/examples/lip/lip.m | 8
fda-2.1.2/fda/inst/Matlab/fdaM/examples/weather/daily.asv | 33
fda-2.1.2/fda/inst/Matlab/fdaM/examples/weather/daily.m | 27
fda-2.1.2/fda/inst/Matlab/fdaM/fRegress.m | 19
fda-2.1.2/fda/inst/Matlab/fdaM/fRegress_CV.m | 125 +
fda-2.1.2/fda/inst/Matlab/fdaM/landmarkreg.m | 103 -
fda-2.1.2/fda/inst/Matlab/fdaM/pda_overlay.m |only
fda-2.1.2/fda/inst/Matlab/fdaM/register_newfd.m |only
fda-2.1.2/fda/inst/Matlab/fdaM/tperm_fd.m |only
fda-2.1.2/fda/inst/Matlab/fdaM/vec2Lfd.m |only
fda-2.1.2/fda/inst/doc/fRegress-JSM2009 |only
fda-2.1.2/fda/inst/scripts/fda-script-progress.xls |binary
fda-2.1.2/fda/inst/scripts/fdarm-ch01.R | 70 -
fda-2.1.2/fda/inst/scripts/fdarm-ch02.R | 10
fda-2.1.2/fda/inst/scripts/fdarm-ch03.R | 42
fda-2.1.2/fda/inst/scripts/fdarm-ch04.R | 48
fda-2.1.2/fda/inst/scripts/fdarm-ch05.R | 212 ++-
fda-2.1.2/fda/inst/scripts/fdarm-ch06.R | 97 -
fda-2.1.2/fda/inst/scripts/fdarm-ch07.R | 187 ++
fda-2.1.2/fda/inst/scripts/fdarm-ch08.R | 396 ++++-
fda-2.1.2/fda/inst/scripts/fdarm-ch10.R | 685 ++++++++--
fda-2.1.2/fda/inst/scripts/fdarm-ch11.R | 138 +-
fda-2.1.2/fda/man/AmpPhaseDecomp.Rd | 141 +-
fda-2.1.2/fda/man/CSTR.Rd | 176 +-
fda-2.1.2/fda/man/CanadianWeather.Rd | 1
fda-2.1.2/fda/man/axisIntervals.Rd | 3
fda-2.1.2/fda/man/eval.fd.Rd | 2
fda-2.1.2/fda/man/eval.monfd.Rd | 3
fda-2.1.2/fda/man/fRegress.CV.Rd | 17
fda-2.1.2/fda/man/fRegress.Rd | 4
fda-2.1.2/fda/man/fda-internal.Rd | 2
fda-2.1.2/fda/man/handwrit.Rd | 81 -
fda-2.1.2/fda/man/lambda2df.Rd | 38
fda-2.1.2/fda/man/landmarkreg.Rd | 178 +-
fda-2.1.2/fda/man/linmod.Rd | 137 --
fda-2.1.2/fda/man/monfn.Rd |only
fda-2.1.2/fda/man/pda.fd.Rd | 2
fda-2.1.2/fda/man/plot.fd.Rd | 11
fda-2.1.2/fda/man/plot.pda.fd.rd | 11
fda-2.1.2/fda/man/register.fd.Rd | 388 ++---
fda-2.1.2/fda/man/register.newfd.rd | 28
fda-2.1.2/fda/man/seabird.Rd |only
fda-2.1.2/fda/man/smooth.monotone.Rd | 435 +++---
80 files changed, 3419 insertions(+), 2059 deletions(-)
Author: Mark Stevenson
Diff between epiR versions 0.9-16 dated 2009-05-24 and 0.9-17 dated 2009-06-02
Title: Functions for analysing epidemiological data
Description: A package for analysing epidemiological data. Contains
functions for directly and indirectly adjusting measures of
disease frequency, quantifying measures of association on the
basis of single or multiple strata of count data presented in a
contingency table, and computing confidence intervals around
incidence risk and incidence rate estimates. Miscellaneous
functions for use in meta-analysis, diagnostic test
interpretation, and sample size calculations.
DESCRIPTION | 8
doc/epiR.pdf | 1984 ++++++++++++++++++++++++++++----------------------------
man/epi.2by2.Rd | 8
3 files changed, 1001 insertions(+), 999 deletions(-)
Author: Michael Lawrence
Diff between RGtk2 versions 2.12.11 dated 2009-05-18 and 2.12.12 dated 2009-06-02
Title: R bindings for Gtk 2.8.0 and above
Description: Facilities in the R language for programming graphical
interfaces using Gtk, the Gimp Tool Kit.
DESCRIPTION | 6 -
R/gtkFuncs.R | 28 ------
R/gtkManuals.R | 26 +++++
R/zzz.R | 7 -
configure | 251 +++++++++++++++++++++++++++++++++++--------------------
configure.in | 4
demo/tooltips.R | 3
src/Makevars | 2
src/Makevars.in | 2
src/Rgtk.c | 70 ++++++++++++++-
src/glib.c | 6 -
src/gtkManuals.c | 14 +--
12 files changed, 280 insertions(+), 139 deletions(-)
Author: Thomas Lumley
Title: analysis of complex survey samples
Description: Summary statistics, generalised linear models, Cox models,
loglinear models, and general maximum pseudolikelihood
estimation for multistage stratified, cluster-sampled,
unequally weighted survey samples. Variances by Taylor series
linearisation or replicate weights. Post-stratification,
calibration, and raking. Two-phase designs. Graphics.
Predictive margins by direct standardization. PPS sampling
without replacement.
Diff between survey versions 3.15 dated 2009-05-18 and 3.16 dated 2009-06-02
DESCRIPTION | 9 ++-- NAMESPACE | 8 +++ R/ht.R | 36 ---------------- R/multistage.R | 31 ++++++++++---- R/pps.R |only R/survey.R | 10 +++- R/twophase.R | 2 R/twophase2.R | 4 - TODO | 4 - inst/CITATION | 4 - inst/NEWS | 7 +++ inst/doc/domain.pdf |binary inst/doc/epi.pdf |binary inst/doc/phase1.Rnw | 5 +- inst/doc/phase1.pdf |binary inst/doc/pps.Rnw |only inst/doc/pps.pdf |only inst/doc/survey.pdf |binary man/HR.Rd |only man/election.Rd | 28 ++++++++++-- man/svydesign.Rd | 33 +++++++++++---- tests/domain.Rout.save | 32 +++++++------- tests/nwts-cch.Rout.save | 42 ++++++++++++++----- tests/nwts.Rout.save | 102 +++++++++++++++++++++++++++++------------------ tests/pps.R | 1 tests/twophase.Rout.save | 32 ++++++++------ 26 files changed, 235 insertions(+), 155 deletions(-)
Author: Hana Sevcikova, A. J. Rossini
Title: Fault Tolerant Simple Network of Workstations
Description: Extension of the snow package supporting fault tolerant
and reproducible applications, as well as supporting
easy-to-use parallel programming - only one function is needed.
It is written for the PVM communication layer.
Diff between snowFT versions 0.0-4 dated 2008-12-12 and 1.0-1 dated 2009-06-02
DESCRIPTION | 16 +++++++++++----- man/snowFT-package.Rd |only 2 files changed, 11 insertions(+), 5 deletions(-)
Author: John Fox
Diff between sem versions 0.9-16 dated 2009-04-01 and 0.9-17 dated 2009-06-02
Title: Structural Equation Models
Description: This package contains functions for fitting general linear
structural equation models (with observed and unobserved
variables) by the method of maximum likelihood using the RAM
approach, and for fitting structural equations in
observed-variable models by two-stage least squares.
DESCRIPTION | 13 +-
R/path.diagram.R | 177 ++++++++++++++++++++++++++-------------
R/standardized.coefficients.R | 105 ++++++++++++++++-------
inst/CHANGES | 6 +
man/path.diagram.Rd | 7 -
man/sem.Rd | 6 +
man/standardized.coefficients.Rd | 63 ++++++++++---
7 files changed, 265 insertions(+), 112 deletions(-)
Author: Douglas Bates and Ana Ines Vazquez
Title: Pedigree-based mixed-effects models
Description: Fit pedigree-based mixed-effects models.
Diff between pedigreemm versions 0.2-1 dated 2009-05-24 and 0.2-2 dated 2009-06-02
ChangeLog | 11 +++++++++++ DESCRIPTION | 10 +++++----- R/pedigree.R | 11 +++++++---- man/relfactor.Rd | 5 ++++- 4 files changed, 27 insertions(+), 10 deletions(-)
Author: Tristen Hayfield
Diff between np versions 0.30-2 dated 2009-04-19 and 0.30-3 dated 2009-06-02
Title: Nonparametric kernel smoothing methods for mixed data types
Description: This package provides a variety of nonparametric (and
semiparametric) kernel methods that seamlessly handle a mix of
continuous, unordered, and ordered factor data types. We would
like to gratefully acknowledge support from the Natural
Sciences and Engineering Research Council of Canada
(NSERC:www.nserc.ca), the Social Sciences and Humanities
Research Council of Canada (SSHRC:www.sshrc.ca), and the Shared
Hierarchical Academic Research Computing Network
(SHARCNET:www.sharcnet.ca).
CHANGELOG | 7
DESCRIPTION | 8
R/zzz.R | 2
inst/doc/np.pdf | 1955 +++++++++++++++++------------------
inst/doc/np_faq.pdf | 2673 ++++++++++++++++++++++++------------------------
man/np.smoothcoef.Rd | 51
man/np.smoothcoef.bw.Rd | 7
src/jksum.c | 30
src/kernel.c | 71 -
svn-commit.tmp |only
10 files changed, 2406 insertions(+), 2398 deletions(-)
Author: Stefano Iacus
Diff between cem versions 1.0.106 dated 2009-05-13 and 1.0.108 dated 2009-06-02
Title: CEM: Software for Coarsened Exact Matching
Description: This program implements the coarsened exact matching
algorithm (and many extensions) described in Stefano M. Iacus,
Gary King, and Giuseppe Porro, "Matching for Causal Inference
Without Balance Checking,"
http://gking.harvard.edu/files/abs/cem-abs.shtml
DESCRIPTION | 8
R/att.R | 2
R/relax.plot.R | 132 +-
inst/doc/JSS-paper.tex | 1547 ------------------------
inst/doc/Rplots.pdf | 1495 +++++++++--------------
inst/doc/cem.Rnw | 2
inst/doc/cem.bib |only
inst/doc/cem.pdf | 3064 ++++++++++++++++++++++---------------------------
inst/doc/coarsen1.pdf | 655 +++++-----
inst/doc/coarsen2.pdf | 317 ++---
inst/doc/index.shtml | 4
inst/doc/teff.pdf | 558 ++------
12 files changed, 2769 insertions(+), 5015 deletions(-)
Author: Markus Helbig
Diff between JGR versions 1.6-3 dated 2009-02-07 and 1.6-4 dated 2009-06-02
Title: JGR - Java Gui for R
Description: Java GUI for R - cross-platform, universal and unified
Graphical User Interface for R. For full functionality on
Windows and Mac OS X JGR requires a start application which
depends on your OS. This can be downloaded from JGR's website:
http://www.rosuda.org/JGR
JGR-1.6-3/JGR/._NEWS |only
JGR-1.6-3/JGR/man/jgr.addMenu.rd |only
JGR-1.6-3/JGR/man/jgr.addMenuItem.rd |only
JGR-1.6-3/JGR/man/jgr.addMenuSeperator.rd |only
JGR-1.6-4/JGR/DESCRIPTION | 18 +-
JGR-1.6-4/JGR/NEWS | 253 +++++++++++++++---------------
JGR-1.6-4/JGR/R/JGR.R | 71 ++++----
JGR-1.6-4/JGR/inst/java/JGR.jar |binary
JGR-1.6-4/JGR/man/jgr.addMenu.Rd |only
JGR-1.6-4/JGR/man/jgr.addMenuItem.Rd |only
JGR-1.6-4/JGR/man/jgr.addMenuSeperator.Rd |only
11 files changed, 184 insertions(+), 158 deletions(-)