Author: M Henry H Stevens
Title: Functions and data for the forthcoming, A Primer of Ecology with
R
Description: Functions are primarily functions for systems of ordinary
differential equations, difference equations, and eigenanalysis
and projection of demographic matrices; data are for examples.
Diff between primer versions 0.1 dated 2009-03-27 and 0.2 dated 2009-06-03
primer-0.1/primer/R/myQ.R |only primer-0.1/primer/man/myQ.Rd |only primer-0.2/primer/DESCRIPTION | 8 ++++---- primer-0.2/primer/R/chesson.R |only primer-0.2/primer/man/BSsucc.Rd | 11 ++++++----- primer-0.2/primer/man/CandG.Rd | 8 +++++--- primer-0.2/primer/man/ClostExp.Rd | 8 +++++--- primer-0.2/primer/man/DemoBoot.Rd | 13 +++++++------ primer-0.2/primer/man/DemoInfo.Rd | 8 ++++---- primer-0.2/primer/man/MetaSim.Rd | 18 ++++++++++++------ primer-0.2/primer/man/PopSim.Rd | 2 +- primer-0.2/primer/man/ProjMat.Rd | 8 ++++---- primer-0.2/primer/man/SIR.Rd | 10 ++++++---- primer-0.2/primer/man/SIRbd.Rd | 15 ++++++++++----- primer-0.2/primer/man/SIRf.Rd | 11 +++++++---- primer-0.2/primer/man/chesson.Rd |only primer-0.2/primer/man/clogistic.Rd | 22 +++++++++++++++++----- primer-0.2/primer/man/compcol.Rd | 12 +++++++----- primer-0.2/primer/man/compcolM.Rd | 11 +++++++---- primer-0.2/primer/man/dlogistic.Rd | 4 ++-- primer-0.2/primer/man/dlvcomp2.Rd | 11 +++++++---- primer-0.2/primer/man/fruitdat.Rd | 8 +++++--- primer-0.2/primer/man/gotelli.Rd | 16 ++++++++-------- primer-0.2/primer/man/hanski.Rd | 9 +++++---- primer-0.2/primer/man/igp.Rd | 10 ++++++---- primer-0.2/primer/man/lande.Rd | 10 +++++----- primer-0.2/primer/man/levins.Rd | 12 ++++-------- primer-0.2/primer/man/lvcomp2.Rd | 7 +++---- primer-0.2/primer/man/lvcomp3.Rd | 6 +++--- primer-0.2/primer/man/lvcompg.Rd | 10 +++++----- primer-0.2/primer/man/pimmlawton.Rd | 31 +++++++++++++++++++------------ primer-0.2/primer/man/predpreyLV.Rd | 6 +++--- primer-0.2/primer/man/predpreyRM.Rd | 12 ++++++++---- primer-0.2/primer/man/primer-package.Rd | 7 ++++--- primer-0.2/primer/man/ross.Rd | 6 ++++-- primer-0.2/primer/man/scheffer.Rd | 13 +++++++++---- primer-0.2/primer/man/seeddat.Rd | 9 ++++++--- primer-0.2/primer/man/sparrows.Rd | 6 +++--- primer-0.2/primer/man/stagedat.Rd | 4 ++-- primer-0.2/primer/man/succniche.Rd | 13 ++++++++----- primer-0.2/primer/man/thetalogistic.Rd | 6 ++++-- primer-0.2/primer/man/weeds.Rd | 17 ++++++++++------- 42 files changed, 235 insertions(+), 163 deletions(-)
Author: Karel Van den Meersche
Diff between BCE versions 1.1 dated 2008-05-08 and 1.3 dated 2009-06-03
Title: Bayesian composition estimator: estimating sample (taxonomic)
composition from biomarker data
Description: Function to estimates taxonomic compositions from
biomarker data, using a Bayesian approach.
DESCRIPTION | 27 +++++++++++++++++----------
NAMESPACE | 2 +-
R/BCE.r | 19 +++++++++++--------
R/tlsce.r |only
man/BCE.Rd | 29 +++++++++++++++++------------
man/export.bce.Rd | 2 +-
man/pairs.bce.Rd | 6 +++---
man/tlsce.Rd |only
8 files changed, 50 insertions(+), 35 deletions(-)
Author: Rasmus E. Benestad
Diff between clim.pact versions 2.2-35 dated 2009-05-27 and 2.2-36 dated 2009-06-03
Title: Climate analysis and empirical-statistical downscaling (ESD)
package for monthly and daily data.
Description: The package contains R functions for retrieving data,
making climate analysis and downscaling of monthly mean and
daily mean global climate scenarios. (Windows-users may need to
obtain the 'ncdf' package from URL
'http://www.stats.ox.ac.uk/pub/RWin/' to get clim.pact to
work). The package is also described in the book
'Empirical-Statistical Downscaling
(http://www.worldscibooks.com/environsci/6908.html)
DESCRIPTION | 8 ++---
R/ds.R | 1
R/eof.R | 26 +++++++++++++++---
R/map.R | 5 +++
R/objDS.R | 40 +++++++++++++++-------------
R/plotDS.R | 8 ++++-
R/plotEOF.R | 79 +++++++++++++++++++++++++++++++--------------------------
man/objDS.Rd | 3 +-
man/plotEOF.Rd | 3 +-
9 files changed, 106 insertions(+), 67 deletions(-)
Author: Carsten F. Dormann and Bernd Gruber, with additional code from
Mariano Devoto, Jochen Fruend, Jose Iriondo and Diego Vazquez,
also based on C-code developed by Nils Bluethgen and by Miguel
Rodriguez-Girones.
Title: Visualising bipartite networks and calculating some ecological
indices.
Description: Bipartite provides functions to viualise webs and
calculate a series of indices commonly used to describe pattern
in ecological webs. It focusses on webs consisting of only two
trophic levels, e.g. pollination webs or predator-prey-webs.
Visualisation is important to get an idea of what we are
actually looking at, while the indices summarise different
aspects of the webs topology.
Diff between bipartite versions 0.91 dated 2009-05-06 and 0.92 dated 2009-06-03
bipartite-0.91/bipartite/Jochentest.txt |only bipartite-0.91/bipartite/vazquez_et_al_ms.pdf |only bipartite-0.92/bipartite/DESCRIPTION | 16 - bipartite-0.92/bipartite/R/empty.R | 13 bipartite-0.92/bipartite/R/functspec.r | 3 bipartite-0.92/bipartite/R/networklevel.R | 3 bipartite-0.92/bipartite/R/nodespec.r | 4 bipartite-0.92/bipartite/R/visweb.R | 296 ++++++++++------------ bipartite-0.92/bipartite/R/wine.r | 39 ++ bipartite-0.92/bipartite/R/zzz.R | 4 bipartite-0.92/bipartite/man/C.score.Rd | 2 bipartite-0.92/bipartite/man/bipartite-package.Rd | 14 - bipartite-0.92/bipartite/man/networklevel.Rd | 2 bipartite-0.92/bipartite/man/swap.web.Rd | 2 bipartite-0.92/bipartite/man/vazquez.example.rd | 18 - bipartite-0.92/bipartite/man/visweb.Rd | 8 bipartite-0.92/bipartite/man/wine.rd | 14 - 17 files changed, 227 insertions(+), 211 deletions(-)
Author: Michael J. Kane and John W. Emerson
Title: Manage massive matrices in R using C++, with support for shared
memory and memory-mapped files.
Description: Use C++ to create, store, access, and manipulate massive
matrices. Matrices may optionally be allocated to shared
memory and/or may use memory-mapped files.
Diff between bigmemory versions 3.6 dated 2009-05-04 and 3.7 dated 2009-06-03
bigmemory-3.6/bigmemory/R/is.filebacked.R |only bigmemory-3.6/bigmemory/README |only bigmemory-3.6/bigmemory/SHM |only bigmemory-3.6/bigmemory/src/writedescr.txt |only bigmemory-3.7/bigmemory/DESCRIPTION | 8 bigmemory-3.7/bigmemory/NAMESPACE | 4 bigmemory-3.7/bigmemory/R/bigmatrix.R | 414 +++++++++------------- bigmemory-3.7/bigmemory/R/bigmatrixLib.R | 6 bigmemory-3.7/bigmemory/R/bigmatrixShm.R | 122 ++++-- bigmemory-3.7/bigmemory/configure.Rout | 2 bigmemory-3.7/bigmemory/man/big.matrix-class.Rd | 5 bigmemory-3.7/bigmemory/man/big.matrix.Rd | 18 bigmemory-3.7/bigmemory/man/big.sub.matrix.Rd |only bigmemory-3.7/bigmemory/man/bigmemory-package.Rd | 4 bigmemory-3.7/bigmemory/man/colmean.Rd | 4 bigmemory-3.7/bigmemory/man/write.big.matrix.Rd | 12 bigmemory-3.7/bigmemory/src/BigMatrix.cpp | 291 +++++++++------ bigmemory-3.7/bigmemory/src/BigMatrix.h | 96 ++++- bigmemory-3.7/bigmemory/src/BigMatrixAccessor.hpp | 11 bigmemory-3.7/bigmemory/src/CbigmemoRy.cpp | 181 +++++++-- bigmemory-3.7/bigmemory/src/CbigmemoRyLib.cpp | 42 +- bigmemory-3.7/bigmemory/src/TODO.txt |only 22 files changed, 712 insertions(+), 508 deletions(-)
Author: Achim Zeileis, Kurt Hornik
Title: CRAN Task Views
Description: Server-side and client-side tools for task views to
CRAN-style repositories
Diff between ctv versions 0.5-1 dated 2009-02-11 and 0.5-2 dated 2009-06-03
COPYRIGHTS | 2 DESCRIPTION | 12 NEWS | 5 R/ctv-server.R | 14 inst/ctv/Bayesian.ctv | 599 +++++++++++-------------- inst/ctv/ChemPhys.ctv | 4 inst/ctv/Cluster.ctv | 142 ++++- inst/ctv/Distributions.ctv | 32 - inst/ctv/Distributions.html |only inst/ctv/Econometrics.ctv | 17 inst/ctv/Environmetrics.ctv | 4 inst/ctv/ExperimentalDesign.ctv | 33 - inst/ctv/Finance.ctv | 157 ++++-- inst/ctv/HighPerformanceComputing.ctv | 90 ++- inst/ctv/MedicalImaging.ctv |only inst/ctv/Multivariate.ctv | 17 inst/ctv/Optimization.ctv | 40 + inst/ctv/Psychometrics.ctv | 28 + inst/ctv/SocialSciences.ctv | 3 inst/ctv/Spatial.ctv | 98 ++-- inst/ctv/Survival.ctv | 814 +++++++++++++++++++++------------- inst/ctv/TimeSeries.ctv | 27 - inst/ctv/gR.ctv | 222 +++++---- inst/doc/ctv-howto.pdf |binary man/ctv-server.Rd | 2 25 files changed, 1439 insertions(+), 923 deletions(-)