Author: Steffen Moeller
Diff between sugaR versions 0.0-4 dated 2009-06-02 and 0.0-5 dated 2009-06-07
Title: Plots to help optimising diabetes therapy
Description: The package provides a series of plots to integrate
glucose levels, basal rate, activities, events and carbohydrate
uptake on a single page in a humanely interpretable manner. It
is meant for best-possibly representing the content of a
well-curated diabetes diary of up to a week's time or of up to
seven comparable days, from which conclusions for adjusting the
individual treatment shall be drawn.
DESCRIPTION | 16
Makefile | 2
R/data.R | 23
R/diabetes.R | 82
data/diabetesDiary.RData |binary
inst/doc/sugaR.Rnw | 802 ++++---
inst/doc/sugaR.pdf | 5035 ++++++++++++++++++++++++++++-------------------
man/diabetesDiary.Rd | 22
man/sugar.over.time.Rd | 7
9 files changed, 3668 insertions(+), 2321 deletions(-)
Author: Jean Thioulouse
Diff between ade4TkGUI versions 0.2-4 dated 2009-05-04 and 0.2-5 dated 2009-06-07
Title: ade4 Tcl/Tk Graphical User Interface
Description: a Tcl/Tk GUI for some basic functions in the ade4 package
DESCRIPTION | 10 ++--
R/ordiClust.R | 116 ++++++++++++++++++++++++++++++++++++++++++++++++++++++-
man/ordiClust.Rd | 3 -
3 files changed, 122 insertions(+), 7 deletions(-)
Author: G. Grothendieck
Diff between sqldf versions 0-1.4 dated 2008-12-11 and 0-1.5 dated 2009-06-07
Title: Perform SQL Selects on R Data Frames
Description: Manipulate R data frames using SQL.
DESCRIPTION | 31 +++++++++++++------------------
R/sqldf.R | 16 ++++++++++++++++
inst/NEWS | 11 +++++++++--
inst/THANKS | 1 +
inst/TODO |only
man/read.csv.sql.Rd |only
man/sqldf.Rd | 7 +++----
7 files changed, 42 insertions(+), 24 deletions(-)
Author: Carter T. Butts
Diff between sna versions 1.5 dated 2007-08-01 and 2.0 dated 2009-06-07
Title: Tools for Social Network Analysis
Description: A range of tools for social network analysis, including
node and graph-level indices, structural distance and
covariance methods, structural equivalence detection, p*
modeling, random graph generation, and 2D/3D network
visualization.
sna-1.5/sna/man/addisolates-deprecated.Rd |only
sna-2.0/sna/ChangeLog | 85 +++
sna-2.0/sna/DESCRIPTION | 18
sna-2.0/sna/INDEX | 17
sna-2.0/sna/R/connectivity.R | 262 ++++++++++-
sna-2.0/sna/R/dataprep.R | 492 ++++++++++++++++++----
sna-2.0/sna/R/fileio.R | 11
sna-2.0/sna/R/gli.R | 333 +++++++--------
sna-2.0/sna/R/gmultiv.R | 22 -
sna-2.0/sna/R/gtest.R | 118 +++++
sna-2.0/sna/R/models.R | 252 +++++++----
sna-2.0/sna/R/nli.R | 368 ++++++++++------
sna-2.0/sna/R/randomgraph.R | 314 ++++++++++----
sna-2.0/sna/R/roles.R | 103 ++++
sna-2.0/sna/R/sna-operators.R | 34 +
sna-2.0/sna/R/visualization.R | 434 +++++++++++++------
sna-2.0/sna/data |only
sna-2.0/sna/man/add.isolates.Rd | 3
sna-2.0/sna/man/bbnam.Rd | 73 +--
sna-2.0/sna/man/bbnam.bf.Rd | 39 +
sna-2.0/sna/man/betweenness.Rd | 57 ++
sna-2.0/sna/man/bicomponent.dist.Rd |only
sna-2.0/sna/man/brokerage.Rd | 12
sna-2.0/sna/man/centralization.Rd | 4
sna-2.0/sna/man/clique.census.Rd |only
sna-2.0/sna/man/closeness.Rd | 9
sna-2.0/sna/man/coleman.Rd |only
sna-2.0/sna/man/cug.test.Rd |only
sna-2.0/sna/man/cugtest.Rd | 14
sna-2.0/sna/man/cutpoints.Rd |only
sna-2.0/sna/man/degree.Rd | 11
sna-2.0/sna/man/evcent.Rd | 4
sna-2.0/sna/man/flowbet.Rd |only
sna-2.0/sna/man/gapply.Rd | 2
sna-2.0/sna/man/gclust.centralgraph.Rd | 2
sna-2.0/sna/man/gden.Rd | 5
sna-2.0/sna/man/geodist.Rd | 13
sna-2.0/sna/man/gplot.Rd | 23 -
sna-2.0/sna/man/gplot3d.Rd | 8
sna-2.0/sna/man/graphcent.Rd | 17
sna-2.0/sna/man/grecip.Rd | 11
sna-2.0/sna/man/gt.Rd |only
sna-2.0/sna/man/gtrans.Rd | 5
sna-2.0/sna/man/interval.graph.Rd | 4
sna-2.0/sna/man/kcores.Rd |only
sna-2.0/sna/man/loadcent.Rd |only
sna-2.0/sna/man/lower.tri.remove.Rd | 2
sna-2.0/sna/man/lubness.Rd | 2
sna-2.0/sna/man/make.stochastic.Rd | 2
sna-2.0/sna/man/maxflow.Rd |only
sna-2.0/sna/man/nacf.Rd | 2
sna-2.0/sna/man/netlm.Rd | 16
sna-2.0/sna/man/path.census.Rd | 10
sna-2.0/sna/man/plot.bbnam.Rd | 2
sna-2.0/sna/man/plot.blockmodel.Rd | 2
sna-2.0/sna/man/plot.cugtest.Rd | 2
sna-2.0/sna/man/plot.equiv.clust.Rd | 2
sna-2.0/sna/man/plot.lnam.Rd | 2
sna-2.0/sna/man/plot.qaptest.Rd | 2
sna-2.0/sna/man/plot.sociomatrix.Rd | 8
sna-2.0/sna/man/potscalered.mcmc.Rd | 6
sna-2.0/sna/man/print.bayes.factor.Rd | 6
sna-2.0/sna/man/print.bbnam.Rd | 6
sna-2.0/sna/man/print.blockmodel.Rd | 6
sna-2.0/sna/man/print.cugtest.Rd | 6
sna-2.0/sna/man/print.lnam.Rd | 2
sna-2.0/sna/man/print.netcancor.Rd | 10
sna-2.0/sna/man/print.netlm.Rd | 10
sna-2.0/sna/man/print.netlogit.Rd | 10
sna-2.0/sna/man/print.qaptest.Rd | 10
sna-2.0/sna/man/print.summary.bayes.factor.Rd | 10
sna-2.0/sna/man/print.summary.bbnam.Rd | 12
sna-2.0/sna/man/print.summary.blockmodel.Rd | 12
sna-2.0/sna/man/print.summary.cugtest.Rd | 12
sna-2.0/sna/man/print.summary.lnam.Rd | 2
sna-2.0/sna/man/print.summary.netcancor.Rd | 12
sna-2.0/sna/man/print.summary.netlm.Rd | 12
sna-2.0/sna/man/print.summary.netlogit.Rd | 12
sna-2.0/sna/man/print.summary.qaptest.Rd | 12
sna-2.0/sna/man/read.nos.Rd | 13
sna-2.0/sna/man/redist.Rd |only
sna-2.0/sna/man/rgbn.Rd | 26 -
sna-2.0/sna/man/rgnm.Rd | 14
sna-2.0/sna/man/rgnmix.Rd |only
sna-2.0/sna/man/rgraph.Rd | 7
sna-2.0/sna/man/rguman.Rd | 9
sna-2.0/sna/man/rgws.Rd | 7
sna-2.0/sna/man/sna-defunct.Rd | 2
sna-2.0/sna/man/sna-deprecated.Rd | 11
sna-2.0/sna/man/sna-internal.Rd | 11
sna-2.0/sna/man/sna.Rd | 17
sna-2.0/sna/man/stackcount.Rd | 4
sna-2.0/sna/man/stresscent.Rd | 5
sna-2.0/sna/man/summary.bayes.factor.Rd | 6
sna-2.0/sna/man/summary.bbnam.Rd | 8
sna-2.0/sna/man/summary.blockmodel.Rd | 8
sna-2.0/sna/man/summary.cugtest.Rd | 8
sna-2.0/sna/man/summary.lnam.Rd | 2
sna-2.0/sna/man/summary.netcancor.Rd | 8
sna-2.0/sna/man/summary.netlm.Rd | 8
sna-2.0/sna/man/summary.netlogit.Rd | 8
sna-2.0/sna/man/summary.qaptest.Rd | 8
sna-2.0/sna/man/symmetrize.Rd | 3
sna-2.0/sna/src/cohesion.c |only
sna-2.0/sna/src/cohesion.h |only
sna-2.0/sna/src/components.c | 194 ++++++++
sna-2.0/sna/src/components.h | 18
sna-2.0/sna/src/geodist.c | 571 +++++++++++++++++++++++++-
sna-2.0/sna/src/geodist.h | 16
sna-2.0/sna/src/gli.c | 16
sna-2.0/sna/src/gli.h | 4
sna-2.0/sna/src/layout.c | 91 ++--
sna-2.0/sna/src/layout.h | 20
sna-2.0/sna/src/nli.c | 291 ++++++++++++-
sna-2.0/sna/src/nli.h | 30 +
sna-2.0/sna/src/paths.c | 99 ++--
sna-2.0/sna/src/paths.h | 7
sna-2.0/sna/src/randomgraph.c | 477 +++++++++++++++++++++
sna-2.0/sna/src/randomgraph.h | 16
sna-2.0/sna/src/triads.c | 205 ++++++++-
sna-2.0/sna/src/triads.h | 11
sna-2.0/sna/src/utils.c | 355 +++++++++++++++-
sna-2.0/sna/src/utils.h | 75 +++
123 files changed, 4854 insertions(+), 1236 deletions(-)
Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto, Steve
Ellner, Bruce Kendall
Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes
Diff between pomp versions 0.24-1 dated 2009-05-15 and 0.24-5 dated 2009-06-07
pomp-0.24-1/pomp/inst/doc/Rplots.pdf |only pomp-0.24-1/pomp/inst/doc/compiled_code_in_pomp.Rnw |only pomp-0.24-1/pomp/inst/doc/compiled_code_in_pomp.pdf |only pomp-0.24-5/pomp/DESCRIPTION | 10 pomp-0.24-5/pomp/R/bsplines.R | 16 - pomp-0.24-5/pomp/R/nlf.R | 2 pomp-0.24-5/pomp/data/euler.sir.rda |binary pomp-0.24-5/pomp/data/ou2.rda |binary pomp-0.24-5/pomp/data/rw2.rda |binary pomp-0.24-5/pomp/inst/ChangeLog | 66 +++++ pomp-0.24-5/pomp/inst/doc/Makefile | 4 pomp-0.24-5/pomp/inst/doc/advanced_topics_in_pomp.Rnw |only pomp-0.24-5/pomp/inst/doc/advanced_topics_in_pomp.pdf |only pomp-0.24-5/pomp/inst/doc/intro_to_pomp.Rnw | 236 ++++++++++++------ pomp-0.24-5/pomp/inst/doc/intro_to_pomp.pdf |binary pomp-0.24-5/pomp/man/bsplines.Rd | 25 - pomp-0.24-5/pomp/man/dmeasure-pomp.Rd | 10 pomp-0.24-5/pomp/man/dprocess-pomp.Rd | 7 pomp-0.24-5/pomp/man/euler.Rd | 34 -- pomp-0.24-5/pomp/man/euler.sir.Rd | 2 pomp-0.24-5/pomp/man/eulermultinom.Rd | 25 - pomp-0.24-5/pomp/man/init.state-pomp.Rd | 19 - pomp-0.24-5/pomp/man/mif-class.Rd | 14 - pomp-0.24-5/pomp/man/mif-methods.Rd | 4 pomp-0.24-5/pomp/man/mif.Rd | 14 - pomp-0.24-5/pomp/man/nlf.Rd | 10 pomp-0.24-5/pomp/man/ou2.Rd | 3 pomp-0.24-5/pomp/man/particles-mif.Rd | 16 - pomp-0.24-5/pomp/man/pfilter.Rd | 7 pomp-0.24-5/pomp/man/pomp-class.Rd | 18 - pomp-0.24-5/pomp/man/pomp-methods.Rd | 8 pomp-0.24-5/pomp/man/pomp-package.Rd | 29 +- pomp-0.24-5/pomp/man/pomp.Rd | 165 ++++++------ pomp-0.24-5/pomp/man/rmeasure-pomp.Rd | 6 pomp-0.24-5/pomp/man/rprocess-pomp.Rd | 5 pomp-0.24-5/pomp/man/simulate-pomp.Rd | 10 pomp-0.24-5/pomp/man/skeleton-pomp.Rd | 10 pomp-0.24-5/pomp/man/sobol.Rd | 14 - pomp-0.24-5/pomp/man/trajectory-pomp.Rd | 20 + pomp-0.24-5/pomp/src/bspline.c | 13 40 files changed, 519 insertions(+), 303 deletions(-)
Author: Yves Croissant
Diff between plm versions 1.1-2 dated 2009-05-05 and 1.1-4 dated 2009-06-07
Title: Linear models for panel data
Description: A set of estimators and tests for panel data
DESCRIPTION | 10 +++++-----
NAMESPACE | 1 +
R/plm.R | 9 +++++----
R/plm.methods.R | 3 +--
changelog | 21 +++++++++++++++++++++
inst |only
6 files changed, 33 insertions(+), 11 deletions(-)
Author: Volkmar Henschel, Christiane Heiss, Ulrich Mansmann
Diff between intcox versions 0.9.1.1 dated 2009-02-23 and 0.9.2 dated 2009-06-07
Title: Iterated Convex Minorant Algorithm for interval censored event
data
Description: Implementation of ICM-Algorithm by Wei Pan, J. Comp. & Gr.
Stat. 78: 109-120, 1999 Algorithm for the Cox proportional
hazard model for interval censored data
intcox-0.9.1.1/intcox/data/aneurism.data.rda |only
intcox-0.9.1.1/intcox/inst/doc/aneurism_km.eps |only
intcox-0.9.1.1/intcox/inst/doc/aneurism_km.pdf |only
intcox-0.9.1.1/intcox/inst/doc/aneurism_para.eps |only
intcox-0.9.1.1/intcox/inst/doc/aneurism_para.pdf |only
intcox-0.9.1.1/intcox/inst/doc/intcox-aneurismplot.eps |only
intcox-0.9.1.1/intcox/inst/doc/intcox-aneurismplot.pdf |only
intcox-0.9.1.1/intcox/man/aneurism.data.Rd |only
intcox-0.9.1.1/intcox/man/intcox-package.Rd |only
intcox-0.9.2/intcox/DESCRIPTION | 28 +-
intcox-0.9.2/intcox/R/intcox.R | 6
intcox-0.9.2/intcox/R/intcox.breslow.R | 3
intcox-0.9.2/intcox/R/intcox.derivs.R | 3
intcox-0.9.2/intcox/R/intcox.fit.R | 3
intcox-0.9.2/intcox/R/intcox.hazard0.R | 3
intcox-0.9.2/intcox/R/intcox.hazard0.beg.R | 3
intcox-0.9.2/intcox/R/intcox.pavaC.R | 3
intcox-0.9.2/intcox/data/AA.data.rda |only
intcox-0.9.2/intcox/inst/doc/Rplots.pdf |only
intcox-0.9.2/intcox/inst/doc/Rplots.ps | 68 ++++++
intcox-0.9.2/intcox/inst/doc/aneur_km.eps |only
intcox-0.9.2/intcox/inst/doc/aneur_km.pdf |only
intcox-0.9.2/intcox/inst/doc/aneur_para.eps |only
intcox-0.9.2/intcox/inst/doc/aneur_para.pdf |only
intcox-0.9.2/intcox/inst/doc/intcox.Rnw | 180 ++++++++---------
intcox-0.9.2/intcox/inst/doc/intcox.pdf |binary
intcox-0.9.2/intcox/man/AA.data.Rd |only
intcox-0.9.2/intcox/man/intcox.Rd | 3
28 files changed, 178 insertions(+), 125 deletions(-)
Author: Patrick Brown
Title: Calculate SMR's from population and case data
Description: works with regular data set file and shape file.
Diff between diseasemapping versions 0.3 dated 2009-04-26 and 0.4 dated 2009-06-07
DESCRIPTION | 8 ++++---- R/getRates.R | 2 +- R/getSMR.data.frame.R | 10 ++++++---- R/getSMR.list.r | 2 +- man/computeArea.Rd | 2 +- man/diseasemapping-package.Rd | 3 +-- man/formatCases.Rd | 12 ++++++------ man/formatPopulation.Rd | 4 ++-- 8 files changed, 22 insertions(+), 21 deletions(-)
More information about diseasemapping at CRAN
Permanent link
Author: Duncan Temple Lang (duncan@wald.ucdavis.edu)
Title: Tools for parsing and generating XML within R and S-Plus.
Description: This package provides many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. It also offers access to an
XPath "interpreter".
Diff between XML versions 2.5-0 dated 2009-06-02 and 2.5-1 dated 2009-06-07
Changes | 7 ++++++ DESCRIPTION | 9 ++++--- INSTALL | 2 - NAMESPACE | 11 ++++++--- R/XMLClasses.R | 2 - R/readHTMLTable.R | 2 + R/xmlOutputBuffer.R | 8 ++++-- R/xmlOutputDOM.R | 14 +++++++++--- R/xmlTree.R | 7 ++++-- configure | 59 +++++++++++++++++++++++++++++++++++++++++++++++++++ configure.in | 23 +++++++++++++++++++ src/libxmlFeatures.c | 12 ++++++++-- 12 files changed, 137 insertions(+), 19 deletions(-)
Author: Duncan Temple Lang
Title: General network (HTTP/FTP/...) client interface for R
Description: The package allows one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Diff between RCurl versions 0.97-3 dated 2009-05-28 and 0.98-1 dated 2009-06-07
RCurl-0.97-3/RCurl/CodeGeneration/foo.html |only RCurl-0.97-3/RCurl/inst/CurlSSL/cacert.pem |only RCurl-0.97-3/RCurl/inst/CurlSSL/google.pem |only RCurl-0.97-3/RCurl/inst/CurlSSL/logfile |only RCurl-0.97-3/RCurl/inst/CurlSSL/myBundle.crt |only RCurl-0.97-3/RCurl/inst/CurlSSL/ok.R |only RCurl-0.97-3/RCurl/inst/CurlSSL/server.pem |only RCurl-0.97-3/RCurl/inst/doc/fileUploads.html |only RCurl-0.97-3/RCurl/inst/doc/fileUploads.pdf |only RCurl-0.97-3/RCurl/inst/doc/philosophy.pdf |only RCurl-0.97-3/RCurl/r_packets.tcp |only RCurl-0.97-3/RCurl/tickets.tcp |only RCurl-0.98-1/RCurl/Changes.html | 19 RCurl-0.98-1/RCurl/CodeGeneration/enum.c.tu |only RCurl-0.98-1/RCurl/CodeGeneration/generate.R | 37 RCurl-0.98-1/RCurl/CodeGeneration/tmp |only RCurl-0.98-1/RCurl/DESCRIPTION | 8 RCurl-0.98-1/RCurl/NAMESPACE | 3 RCurl-0.98-1/RCurl/R/classes.S | 1 RCurl-0.98-1/RCurl/R/upload.R | 8 RCurl-0.98-1/RCurl/configure | 2832 +++++++++++++++++++++++++-- RCurl-0.98-1/RCurl/configure.in | 75 RCurl-0.98-1/RCurl/inst/doc/philosophy.html | 28 RCurl-0.98-1/RCurl/inst/enums/enums.R |only RCurl-0.98-1/RCurl/inst/enums/foo.c |only RCurl-0.98-1/RCurl/itis.R |only RCurl-0.98-1/RCurl/man/CFILE.Rd |only RCurl-0.98-1/RCurl/src/CURLINFOTable.h | 130 - RCurl-0.98-1/RCurl/src/CURLOptTable.h | 60 RCurl-0.98-1/RCurl/src/CurlInfoEnums.h | 27 RCurl-0.98-1/RCurl/src/Makevars | 8 RCurl-0.98-1/RCurl/src/curl.c | 32 32 files changed, 3026 insertions(+), 242 deletions(-)
Author: Markus Helbig
Diff between JGR versions 1.6-4 dated 2009-06-02 and 1.6-5 dated 2009-06-07
Title: JGR - Java Gui for R
Description: Java GUI for R - cross-platform, universal and unified
Graphical User Interface for R. For full functionality on
Windows and Mac OS X JGR requires a start application which
depends on your OS. This can be downloaded from JGR's website:
http://www.rosuda.org/JGR
DESCRIPTION | 4 ++--
NEWS | 4 ++++
R/JGR.R | 4 ++--
inst/java/JGR.jar |binary
4 files changed, 8 insertions(+), 4 deletions(-)
Author: Pedro Brasil
Diff between DiagnosisMed versions 0.2 dated 2009-04-30 and 0.2.2 dated 2009-06-07
Title: Diagnostic test accuracy evaluation for medical professionals.
Description: DiagnosisMed is a package to analyze data from diagnostic
test accuracy evaluating health conditions. It is being built
to be used by health professionals. This package is - or soon
will be - able to estimate sample size for common situations in
diagnostic test accuracy, estimate sensitivity and specificity
from categorical and continuous test results including some
evaluations of indeterminate results, or compare different
analysis strategies into measures commonly used by health
professionals.
DESCRIPTION | 12 -
R/ROC.r | 303 ++++++++++---------------------------------------
R/TGROC.r | 343 ++++++++++++++++++++++++++++++++++++++++++--------------
R/plot.ROC.r |only
R/print.ROC.r | 9 -
R/print.TGROC.r | 25 ++--
R/print.diag.r | 28 ++--
man/ROC.Rd | 41 ++++++
man/TGROC.Rd | 79 +++++++++---
9 files changed, 461 insertions(+), 379 deletions(-)