Mon, 08 Jun 2009

Package quantmod updated to version 0.3-9 with previous version 0.3-7 dated 2008-11-18

Author: Jeffrey A. Ryan
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial trading strategies

Diff between quantmod versions 0.3-7 dated 2008-11-18 and 0.3-9 dated 2009-06-08

 quantmod-0.3-7/quantmod/R/breakpoints.R          |only
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 quantmod-0.3-9/quantmod/DESCRIPTION              |   18 ++-
 quantmod-0.3-9/quantmod/NAMESPACE                |  112 ++++++++++++++++-------
 quantmod-0.3-9/quantmod/R/OHLC.transformations.R |   12 +-
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 quantmod-0.3-9/quantmod/R/getDividends.R         |    2 
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New package mrt with initial version 0.1
Package: mrt
Type: Package
Title: Wright & London's Modern Regression Techniques
Version: 0.1
Date: 2009-06-09
Author: Daniel B. Wright
Maintainer: Daniel B. Wright
Description: Datasets and functions from Wright and London's Modern Regression Techniques
License: Unlimited
LazyLoad: yes
Packaged: 2009-06-08 19:15:39 UTC; wrightd
Repository: CRAN
Date/Publication: 2009-06-08 19:50:42

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Package R.oo updated to version 1.4.8 with previous version 1.4.6 dated 2008-10-30

Author: Henrik Bengtsson
Title: R object-oriented programming with or without references
Description: Methods and classes for object-oriented programming in R with or without references. Large effort has been made on making definition of methods as simple as possible with a minimum of maintenance for package developers. The package has been developed since 2001 and is now considered very stable. This is a cross-platform package implemented in pure R that defines standard S3 classes without any tricks.

Diff between R.oo versions 1.4.6 dated 2008-10-30 and 1.4.8 dated 2009-06-08

 DESCRIPTION                               |   40 ++++++++++++++++++------------
 R/050.Object.R                            |    4 +--
 R/060.Class.R                             |   14 +++++-----
 R/ASCII.R                                 |    7 +++--
 R/BasicObject.R                           |    4 +--
 R/Exception.R                             |    2 -
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 18 files changed, 69 insertions(+), 47 deletions(-)

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Package timereg updated to version 1.2-0 with previous version 1.1-8 dated 2009-04-16

Author: Thomas Scheike with contributions from Torben Martinussen and Jeremy Silver
Title: timereg package for Flexible regression models for survival data.
Description: Programs for Martinussen and Scheike (2006), `Dynamic Regression Models for Survival Data', Springer Verlag. Plus more recent developments. Additive survival model, semiparmetric proportional odds model, cumulative residuals, excess risk models and more. Flexible competing risks regression including GOF-tests.

Diff between timereg versions 1.1-8 dated 2009-04-16 and 1.2-0 dated 2009-06-08

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 timereg-1.2-0/timereg/R/additive-lasso.r           |  221 +++++----------
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 timereg-1.2-0/timereg/R/comprisk.r                 |    2 
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 timereg-1.2-0/timereg/R/mgresid.r                  |    4 
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 timereg-1.2-0/timereg/R/prop-odds.r                |    7 
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 timereg-1.2-0/timereg/man/summary.cum.residuals.Rd |    2 
 timereg-1.2-0/timereg/man/surv-lars.Rd             |   58 +---
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 timereg-1.2-0/timereg/src/aalen.c                  |   22 -
 timereg-1.2-0/timereg/src/additive-pls.c           |   12 
 timereg-1.2-0/timereg/src/comptest.c               |    2 
 timereg-1.2-0/timereg/src/cox-aalen.c              |    2 
 timereg-1.2-0/timereg/src/matrix.c                 |  122 ++++++++
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 timereg-1.2-0/timereg/src/prop-odds.c              |    2 
 49 files changed, 693 insertions(+), 506 deletions(-)

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New package spatcounts with initial version 1.0
Package: spatcounts
Type: Package
Title: Spatial count regression
Version: 1.0
Date: 2009-06-08
Author: Holger Schabenberger
Maintainer: Vinzenz Erhardt
Description: Fit spatial CAR count regression models using MCMC
License: GPL (>= 3)
LazyLoad: yes
Packaged: Mon Jun 8 11:09:33 2009; erhardt
Repository: CRAN
Date/Publication: 2009-06-08 16:25:39

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Package multcomp updated to version 1.1-0 with previous version 1.0-8 dated 2009-05-27

Author: Torsten Hothorn, Frank Bretz and Peter Westfall with contributions by Richard M. Heiberger and Andre Schuetzenmeister
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models.

Diff between multcomp versions 1.0-8 dated 2009-05-27 and 1.1-0 dated 2009-06-08

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 multcomp-1.1-0/multcomp/tests/regtest-Tukey.Rout.save        |   10 
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 19 files changed, 780 insertions(+), 569 deletions(-)

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Package intervals updated to version 0.12.0 with previous version 0.10.3 dated 2009-01-20

Author: Richard Bourgon
Title: Tools for working with points and intervals
Description: Tools for working with and comparing sets of points and intervals.

Diff between intervals versions 0.10.3 dated 2009-01-20 and 0.12.0 dated 2009-06-08

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Package drc updated to version 1.7-0 with previous version 1.6-3 dated 2009-04-14

Author: Christian Ritz , Jens Strebig
Title: Analysis of dose-response curves
Description: Analysis of one or multiple curves with focus on concentration-response, dose-response and time-response curves used, for example in biology, environmental sciences, medicine, pharmacology, toxicology.

Diff between drc versions 1.6-3 dated 2009-04-14 and 1.7-0 dated 2009-06-08

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Package HTMLUtils updated to version 0.1.2 with previous version 0.1.1 dated 2009-05-24

Author: Markus Loecher, Sense Networks
Title: Facilitates automated HTML report creation
Description: Facilitates automated HTML report creation, in particular framed HTML pages and dynamically sortable tables.

Diff between HTMLUtils versions 0.1.1 dated 2009-05-24 and 0.1.2 dated 2009-06-08

 DESCRIPTION              |   11 ++++++-----
 R/CairoWorks.R           |   16 +++++++++++-----
 R/FramedHTML.R           |    4 ++--
 R/myHTMLInitFile.R       |    9 +++++----
 man/CairoWorks.Rd        |    2 +-
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 man/HTMLUtils-package.Rd |    4 ++--
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 8 files changed, 32 insertions(+), 22 deletions(-)

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New package HybridMC with initial version 0.2
Package: HybridMC
Type: Package
Title: Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques
Version: 0.2
Date: 2009-05-27
Author: Richard D. Morey
Maintainer: Richard D. Morey
Depends: utils, coda
Description: This package is an R implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques described in Liu (2001): "Monte Carlo Strategies in Computing".
License: GPL (>= 2)
URL: http://www.r-project.org
LazyLoad: yes
Repository: CRAN
Date/Publication: 2009-06-08 16:50:01

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New package CalciOMatic with initial version 1.1-2
Package: CalciOMatic
Type: Package
Title: Automatic Calcium Imaging Analysis
Version: 1.1-2
Date: 2009-06-02
Author: Sebastien Joucla, Christophe Pouzat
Maintainer: Sebastien Joucla
Description: Simulate and analyse calcium imaging data obtained with ratiometric dyes
License: GPL (>= 2)
Depends: cobs
URL: http://sites.google.com/site/sebastienjoucla
Packaged: 2009-06-08 15:05:12 UTC; xtof
Repository: CRAN
Date/Publication: 2009-06-08 16:47:56

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Package sna updated to version 2.0-1 with previous version 2.0 dated 2009-06-07

Author: Carter T. Butts
Title: Tools for Social Network Analysis
Description: A range of tools for social network analysis, including node and graph-level indices, structural distance and covariance methods, structural equivalence detection, p* modeling, random graph generation, and 2D/3D network visualization.

Diff between sna versions 2.0 dated 2009-06-07 and 2.0-1 dated 2009-06-08

 DESCRIPTION      |    6 +++---
 man/brokerage.Rd |    4 ++--
 2 files changed, 5 insertions(+), 5 deletions(-)

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New package fractalrock with initial version 1.0.0
Package: fractalrock
Type: Package
Title: Generate fractal time series with non-normal returns distribution
Version: 1.0.0
Date: 2009-06-07
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe
Depends: futile, timeDate, zoo, xts, quantmod
Description: The basic principle driving fractal generation of time series is that data is generated iteratively based on increasing levels of resolution. The initial series is defined by a so-called initiator pattern and then generators are used to replace each segment of the initial pattern. Regular, repeatable patterns can be produced by using the same seed and generators. By using a set of generators, non-repeatable time series can be produced. This technique is the basis of the fractal time series process in this package.
License: GPL-2
LazyLoad: yes
Packaged: Sun Jun 7 21:08:45 2009; brian
Repository: CRAN
Date/Publication: 2009-06-08 06:55:08

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New package descr with initial version 0.3.0
Package: descr
Version: 0.3.0
Date: 2009-06-05
Title: Descriptive statistics
Author: Jakson Aquino and Dirk Enzmann
Maintainer: Jakson Aquino
Encoding: UTF-8
Suggests: Hmisc, gmodels
Description: This package contains functions to describe weighted categorical variables and functions to facilitate the character encoding conversion of objects.
License: GPL (>= 2)
URL: http://jalvesaq.googlepages.com/descr
Packaged: 2009-06-07 19:31:11 UTC; jakson
Repository: CRAN
Date/Publication: 2009-06-08 06:55:05

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Package cghFLasso updated to version 0.2-1 with previous version 0.1-2 dated 2007-08-09

Author: Nicholas Austin Johnson , Robert Tibshirani , Pei Wang .
Title: Detecting hot spot on CGH array data with fused lasso regression.
Description: Spatial smoothing and hot spot detection using the fused lasso regression

Diff between cghFLasso versions 0.1-2 dated 2007-08-09 and 0.2-1 dated 2009-06-08

 cghFLasso-0.1-2/cghFLasso/configure                |only
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 cghFLasso-0.1-2/cghFLasso/src/Makevars             |only
 cghFLasso-0.2-1/cghFLasso/DESCRIPTION              |   20 +
 cghFLasso-0.2-1/cghFLasso/R/cghFLasso.R            |  234 ++++++++++++++-------
 cghFLasso-0.2-1/cghFLasso/man/CGH.Rd               |   21 -
 cghFLasso-0.2-1/cghFLasso/man/cghFLasso.Rd         |    5 
 cghFLasso-0.2-1/cghFLasso/man/cghFLasso.ref.Rd     |    7 
 cghFLasso-0.2-1/cghFLasso/man/output.cghFLasso.Rd  |    2 
 cghFLasso-0.2-1/cghFLasso/man/plot.cghFLasso.Rd    |    2 
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 cghFLasso-0.2-1/cghFLasso/src/smooth.f90           |only
 15 files changed, 191 insertions(+), 104 deletions(-)

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Package R.utils updated to version 1.1.7 with previous version 1.1.1 dated 2008-12-11

Author: Henrik Bengtsson
Title: Various programming utilities
Description: This package provides utility classes and methods useful when programming in R and developing R packages.

Diff between R.utils versions 1.1.1 dated 2008-12-11 and 1.1.7 dated 2009-06-08

 R.utils-1.1.1/R.utils/man/Sys.setenv.Rd             |only
 R.utils-1.1.7/R.utils/DESCRIPTION                   |   31 ++--
 R.utils-1.1.7/R.utils/R/Arguments.R                 |  135 +++++++++++++++-----
 R.utils-1.1.7/R.utils/R/Settings.R                  |    5 
 R.utils-1.1.7/R.utils/R/Verbose.R                   |    5 
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 R.utils-1.1.7/R.utils/R/filePath.R                  |    5 
 R.utils-1.1.7/R.utils/R/insert.R                    |   35 ++++-
 R.utils-1.1.7/R.utils/R/isPackageInstalled.R        |only
 R.utils-1.1.7/R.utils/R/isPackageLoaded.R           |    1 
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 R.utils-1.1.7/R.utils/R/mergeIntervals.R            |    2 
 R.utils-1.1.7/R.utils/R/readWindowsShortcut.R       |    5 
 R.utils-1.1.7/R.utils/R/removeDirectory.R           |only
 R.utils-1.1.7/R.utils/R/subplots.R                  |only
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 R.utils-1.1.7/R.utils/incl/insert.Rex               |   19 +-
 R.utils-1.1.7/R.utils/inst/NEWS                     |   47 ++++++
 R.utils-1.1.7/R.utils/man/Settings.Rd               |    5 
 R.utils-1.1.7/R.utils/man/getNumerics.Arguments.Rd  |    4 
 R.utils-1.1.7/R.utils/man/insert.Rd                 |   23 ++-
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 R.utils-1.1.7/R.utils/man/less.Verbose.Rd           |    2 
 R.utils-1.1.7/R.utils/man/mergeIntervals.numeric.Rd |    2 
 R.utils-1.1.7/R.utils/man/readWindowsShortcut.Rd    |    3 
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 31 files changed, 260 insertions(+), 78 deletions(-)

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Package R.huge updated to version 0.1.7 with previous version 0.1.5 dated 2007-09-01

Author: Henrik Bengtsson
Title: Methods for accessing huge amounts of data
Description: The package currently provides a class representing a matrix where the actual data is stored in a binary format on the local file system. This way the size limit of the data is set by the file system and not the memory. Please consider this package to in an alpha/early-beta version.

Diff between R.huge versions 0.1.5 dated 2007-09-01 and 0.1.7 dated 2009-06-08

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 R.huge-0.1.7/R.huge/DESCRIPTION                  |   36 ++++++++++++--------
 R.huge-0.1.7/R.huge/R/000.R                      |   21 +++--------
 R.huge-0.1.7/R.huge/R/AbstractFileArray.R        |   41 +++++++++++++++++++----
 R.huge-0.1.7/R.huge/R/FileMatrix.R               |    3 +
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 R.huge-0.1.7/R.huge/man/dim.AbstractFileArray.Rd |    3 -
 9 files changed, 65 insertions(+), 39 deletions(-)

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