Author: Andrew Gelman
Diff between mi versions 0.07-2 dated 2009-05-10 and 0.07-3 dated 2009-06-10
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
CHANGELOG | 10 ++++++++++
DESCRIPTION | 8 ++++----
R/display.R | 17 +++++++++--------
R/mi.R | 2 +-
R/mi.binary.R | 5 +++--
R/mi.continuous.R | 4 +++-
R/mi.count.R | 4 +++-
man/mi.Rd | 2 +-
8 files changed, 34 insertions(+), 18 deletions(-)
Author: Jun Yan
Diff between copula versions 0.8-3 dated 2009-01-23 and 0.8-7 dated 2009-06-10
Title: Multivariate dependence with copulas
Description: Classes (S4) of commonly used copulas including elliptical
(normal and t), Archimedean (Clayton, Gumbel, Frank, and
Ali-Mikhail-Haq), extreme value (Gumbel, Husler-Reiss,
Galambos, and t-EV), and other families (Plackett and
Farlie-Gumbel-Morgenstern). Methods for density, distribution,
random number generation, bivariate dependence measures,
perspective and contour plots. Functions for fitting copula
models with variance estimate. Independence tests among random
variables and random vectors. Serial independence tests for
univariate and multivariate continuous time series.
Goodness-of-fit tests for copulas based on multipliers and on
the parametric bootstrap.
copula-0.8-3/copula/R/copula.R |only
copula-0.8-3/copula/R/empcopsm.R |only
copula-0.8-3/copula/R/empcoptest.R |only
copula-0.8-3/copula/R/gofCopula.R |only
copula-0.8-3/copula/inst/docs/mathnb/amhExpr.R |only
copula-0.8-3/copula/inst/docs/mathnb/claytonExpr.R |only
copula-0.8-3/copula/inst/docs/mathnb/frankExpr.R |only
copula-0.8-3/copula/inst/docs/mathnb/gumbelExpr.R |only
copula-0.8-3/copula/inst/docs/mathnb/plackettExpr.R |only
copula-0.8-3/copula/src/dgamma.f |only
copula-0.8-3/copula/src/sgen.f |only
copula-0.8-7/copula/ChangeLog | 9
copula-0.8-7/copula/DESCRIPTION | 34
copula-0.8-7/copula/NAMESPACE | 19
copula-0.8-7/copula/R/Classes.R | 65
copula-0.8-7/copula/R/Copula.R |only
copula-0.8-7/copula/R/amhCopula.R | 2
copula-0.8-7/copula/R/asymCopula.R |only
copula-0.8-7/copula/R/claytonCopula.R | 17
copula-0.8-7/copula/R/claytonExpr.R | 3659 ++-----------------
copula-0.8-7/copula/R/derCdfPdf.R | 20
copula-0.8-7/copula/R/ellipCopula.R | 2
copula-0.8-7/copula/R/evCopula.R | 67
copula-0.8-7/copula/R/evTests.R |only
copula-0.8-7/copula/R/exchTests.R |only
copula-0.8-7/copula/R/fgmCopula.R | 3
copula-0.8-7/copula/R/fitCopula.R | 23
copula-0.8-7/copula/R/frankCopula.R | 9
copula-0.8-7/copula/R/frankExpr.R | 662 ---
copula-0.8-7/copula/R/galambosCopula.R | 15
copula-0.8-7/copula/R/gofEVTests.R |only
copula-0.8-7/copula/R/gofTests.R |only
copula-0.8-7/copula/R/gumbelCopula.R | 9
copula-0.8-7/copula/R/gumbelExpr.R | 828 ----
copula-0.8-7/copula/R/huslerReissCopula.R | 15
copula-0.8-7/copula/R/indepCopula.R | 10
copula-0.8-7/copula/R/indepTests.R |only
copula-0.8-7/copula/R/plackettCopula.R | 1
copula-0.8-7/copula/R/skewNormalCopula.R | 2
copula-0.8-7/copula/R/stable.R | 37
copula-0.8-7/copula/R/sysdata.rda |binary
copula-0.8-7/copula/R/tCopula.R | 2
copula-0.8-7/copula/R/tawnCopula.R |only
copula-0.8-7/copula/R/tawnExpr.R |only
copula-0.8-7/copula/R/tevCopula.R |only
copula-0.8-7/copula/inst/docs/mathnb/check2Ivan.R | 14
copula-0.8-7/copula/inst/docs/mathnb/check2Ivan.Rout | 368 +
copula-0.8-7/copula/inst/docs/mathnb/exprPrep.R | 32
copula-0.8-7/copula/inst/docs/mathnb/exprPrep.Rout | 38
copula-0.8-7/copula/inst/docs/obsolete/dgamma.f |only
copula-0.8-7/copula/inst/docs/obsolete/sgen.f |only
copula-0.8-7/copula/man/Copula.Rd | 10
copula-0.8-7/copula/man/assocMeasures.Rd | 11
copula-0.8-7/copula/man/copula-internal.Rd |only
copula-0.8-7/copula/man/ellipCopula.Rd | 4
copula-0.8-7/copula/man/generator-methods.Rd | 9
copula-0.8-7/copula/man/gofCopula.Rd | 64
copula-0.8-7/copula/man/indepCopula-class.Rd | 19
copula-0.8-7/copula/src/Anfun.c |only
copula-0.8-7/copula/src/Anfun.h |only
copula-0.8-7/copula/src/evtest.c |only
copula-0.8-7/copula/src/exchtest.c |only
copula-0.8-7/copula/src/gof.c | 411 --
copula-0.8-7/copula/src/try.c |only
64 files changed, 1385 insertions(+), 5105 deletions(-)
Author: Paul Gilbert
Diff between TSpadi versions 2009.3-2 dated 2009-03-25 and 2009.6-1 dated 2009-06-10
Title: Time Series Database Interface extensions for PADI Time Series
Server
Description: Provides methods for generics in the TSdbi package to
connect through a protocol for application database interface
(PADI) to a time series database (e.g. Fame).
TSpadi-2009.3-2/TSpadi/Makefile |only
TSpadi-2009.3-2/TSpadi/Rbuildignore |only
TSpadi-2009.3-2/TSpadi/exec/getpadi |only
TSpadi-2009.3-2/TSpadi/exec/getpwuid |only
TSpadi-2009.3-2/TSpadi/exec/objectinfo |only
TSpadi-2009.3-2/TSpadi/exec/padi_simple_svc |only
TSpadi-2009.3-2/TSpadi/exec/putpadi |only
TSpadi-2009.3-2/TSpadi/exec/x11arima |only
TSpadi-2009.3-2/TSpadi/tests |only
TSpadi-2009.6-1/TSpadi/DESCRIPTION | 18 ++----
TSpadi-2009.6-1/TSpadi/NEWS | 20 +++++-
TSpadi-2009.6-1/TSpadi/R/TSdbiMethods.R | 5 +
TSpadi-2009.6-1/TSpadi/inst/doc/TSpadiFame.pdf |binary
TSpadi-2009.6-1/TSpadi/src/Makefile | 73 +++++++++++--------------
14 files changed, 60 insertions(+), 56 deletions(-)
Author: Christopher Jackson
Diff between msm versions 0.8.2 dated 2009-04-14 and 0.9 dated 2009-06-10
Title: Multi-state Markov and hidden Markov models in continuous time
Description: Functions for fitting general continuous-time Markov and
hidden Markov multi-state models to longitudinal data. Both
Markov transition rates and the hidden Markov output process
can be modelled in terms of covariates. A variety of
observation schemes are supported, including processes observed
at arbitrary times, completely-observed processes, and censored
states.
msm-0.8.2/msm/inst/doc/Rplots.pdf |only
msm-0.9/msm/ChangeLog | 59 +++++++++++++
msm-0.9/msm/DESCRIPTION | 10 +-
msm-0.9/msm/R/boot.R | 8 -
msm-0.9/msm/R/msm.R | 23 +++--
msm-0.9/msm/R/outputs.R | 162 +++++++++++++++++++++++++-----------
msm-0.9/msm/R/pearson.R | 12 ++
msm-0.9/msm/inst/NEWS | 28 ++++++
msm-0.9/msm/inst/doc/msm-manual.pdf |binary
msm-0.9/msm/man/ematrix.msm.Rd | 3
msm-0.9/msm/man/hmm-dists.Rd | 4
msm-0.9/msm/man/lrtest.msm.Rd | 4
msm-0.9/msm/man/msm.Rd | 5 -
msm-0.9/msm/man/pearson.msm.Rd | 28 ++++--
msm-0.9/msm/man/plot.survfit.msm.Rd | 4
msm-0.9/msm/man/pmatrix.msm.Rd | 11 ++
msm-0.9/msm/man/totlos.msm.Rd | 8 +
msm-0.9/msm/src/doc/msm-manual.Rnw | 81 ++++++------------
msm-0.9/msm/src/lik.c | 19 ++--
msm-0.9/msm/src/msm.h | 1
msm-0.9/msm/src/pijt.c | 5 -
msm-0.9/msm/tests/Rplots.pdf |only
msm-0.9/msm/tests/deriv.R | 2
msm-0.9/msm/tests/pci.R | 18 ++--
msm-0.9/msm/tests/simple.R | 2
25 files changed, 331 insertions(+), 166 deletions(-)
More information about longitudinalData at CRAN
Permanent link
Author: Michael J. Kane and John W. Emerson
Title: Manage massive matrices in R using C++, with support for shared
memory and memory-mapped files.
Description: Use C++ to create, store, access, and manipulate massive
matrices. Matrices may optionally be allocated to shared
memory and/or may use memory-mapped files.
Diff between bigmemory versions 3.7 dated 2009-06-03 and 3.8 dated 2009-06-10
bigmemory-3.7/bigmemory/src/CbigmemoRy.cpp |only bigmemory-3.7/bigmemory/src/CbigmemoRyLib.cpp |only bigmemory-3.8/bigmemory/DESCRIPTION | 8 +++---- bigmemory-3.8/bigmemory/R/bigmatrix.R | 25 ++++++++++++----------- bigmemory-3.8/bigmemory/configure.Rout | 2 - bigmemory-3.8/bigmemory/man/bigmemory-package.Rd | 4 +-- bigmemory-3.8/bigmemory/src/Cbigmemory.cpp |only bigmemory-3.8/bigmemory/src/CbigmemoryLib.cpp |only 8 files changed, 21 insertions(+), 18 deletions(-)
Author: Paul Gilbert
Diff between TSdbi versions 2009.1-1 dated 2009-01-15 and 2009.5-2 dated 2009-06-10
Title: Time Series Database Interface
Description: TSdbi provides a common interface to time series
databases. The objective is to define a standard interface so
users can retrieve time series data from various sources with a
simple, common, set of commands, and so programs can be written
to be portable with respect to the data source. The SQL
implementations also provide a database table design, so users
needing to set up a time series database have a reasonably
complete way to do this easily. The interface provides for a
variety of options with respect to the representation of time
series in R. There is also a (not yet well tested) mechanism to
handle multilingual data documentation.
TSdbi-2009.1-1/TSdbi/test |only
TSdbi-2009.1-1/TSdbi/tests |only
TSdbi-2009.5-2/TSdbi/DESCRIPTION | 31 ++++---
TSdbi-2009.5-2/TSdbi/NAMESPACE | 1
TSdbi-2009.5-2/TSdbi/NEWS | 21 ++++-
TSdbi-2009.5-2/TSdbi/R/TSdbi.R | 7 +
TSdbi-2009.5-2/TSdbi/R/TSquery.R | 129 ++++++++++++++++++-------------
TSdbi-2009.5-2/TSdbi/inst/doc/TSdbi.Stex | 14 ++-
TSdbi-2009.5-2/TSdbi/inst/doc/TSdbi.pdf |binary
TSdbi-2009.5-2/TSdbi/man/TSconnect.Rd | 1
TSdbi-2009.5-2/TSdbi/man/TSquery.Rd | 10 +-
11 files changed, 137 insertions(+), 77 deletions(-)