Thu, 25 Jun 2009

Package epicalc updated to version 2.9.0.2 with previous version 2.9.0.1 dated 2009-06-25

Author: Virasakdi Chongsuvivatwong
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.

Diff between epicalc versions 2.9.0.1 dated 2009-06-25 and 2.9.0.2 dated 2009-06-25

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Package wordnet updated to version 0.1-4 with previous version 0.1-3 dated 2008-05-02

Author: Ingo Feinerer, Kurt Hornik
Title: WordNet Interface
Description: An interface to WordNet using the Jawbone Java API to WordNet. WordNet is an on-line lexical reference system developed by the Cognitive Science Laboratory at Princeton University. Its design is inspired by current psycholinguistic theories of human lexical memory. English nouns, verbs, adjectives and adverbs are organized into synonym sets, each representing one underlying lexical concept. Different relations link the synonym sets.

Diff between wordnet versions 0.1-3 dated 2008-05-02 and 0.1-4 dated 2009-06-25

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Package RKEA updated to version 0.0-2 with previous version 0.0-1 dated 2008-07-11

Author: Ingo Feinerer, Kurt Hornik
Title: R/KEA interface
Description: An R interface to KEA (Version 5.0). KEA (for Keyphrase Extraction Algorithm) allows for extracting keyphrases from text documents. It can be either used for free indexing or for indexing with a controlled vocabulary. For more information see http://www.nzdl.org/Kea/.

Diff between RKEA versions 0.0-1 dated 2008-07-11 and 0.0-2 dated 2009-06-25

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Package smoothSurv updated to version 0.5-1 with previous version 0.4 dated 2009-04-27

Author: Arnost Komarek
Title: Survival Regression with Smoothed Error Distribution
Description: This package contains primarily a function to fit a regression model with possibly right, left or interval censored observations and with the error distrbution expressed as a mixture of G-splines. Core part of the computation is done in compiled C++ written using the Scythe Statistical Libary Version 0.3.

Diff between smoothSurv versions 0.4 dated 2009-04-27 and 0.5-1 dated 2009-06-25

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New package multmod with initial version 0.3
Package: multmod
Title: Testing of multiple outcomes
LazyLoad: yes
LazyData: yes
Version: 0.3
Author: Christian B. Pipper , Christian Ritz
Maintainer: Christian B. Pipper
Description: Testing of multiple outcomes using i.i.d. decompositions
License: GPL (>= 2)
Depends: R (>= 2.6.0), gtools, mvtnorm, sandwich, MASS
Date: 2009-06-23
URL: http://www.r-project.org
Packaged: Wed Jun 24 08:55:42 2009; Christian Pipper
Repository: CRAN
Date/Publication: 2009-06-25 15:10:56

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New package infotheo with initial version 1.0.0
Package: infotheo
Title: Information-Theoretic Tools
Version: 1.0.0
Date: 2009
Author: Patrick E. Meyer
Description: This package implements various measures of information theory. Several entropy estimators are implemented.
Maintainer: Patrick E. Meyer
Depends: R (>= 2.7.0)
License: GPL (>= 3)
URL: http://www.ulb.ac.be/di/mlg
Packaged: 2009-06-25 12:53:13 UTC; pmeyer
Repository: CRAN
Date/Publication: 2009-06-25 15:10:53

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Package bipartite updated to version 0.93 with previous version 0.92 dated 2009-06-03

Author: Carsten F. Dormann and Bernd Gruber, with additional code from Mariano Devoto, Jochen Fruend, Jose Iriondo and Diego Vazquez, also based on C-code developed by Nils Bluethgen and by Miguel Rodriguez-Girones.
Title: Visualising bipartite networks and calculating some ecological indices.
Description: Bipartite provides functions to viualise webs and calculate a series of indices commonly used to describe pattern in ecological webs. It focusses on webs consisting of only two trophic levels, e.g. pollination webs or predator-prey-webs. Visualisation is important to get an idea of what we are actually looking at, while the indices summarise different aspects of the webs topology.

Diff between bipartite versions 0.92 dated 2009-06-03 and 0.93 dated 2009-06-25

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Package XML updated to version 2.5-3 with previous version 2.5-1 dated 2009-06-07

Author: Duncan Temple Lang (duncan@wald.ucdavis.edu)
Title: Tools for parsing and generating XML within R and S-Plus.
Description: This package provides many approaches for both reading and creating XML (and HTML) documents (including DTDs), both local and accessible via HTTP or FTP. It also offers access to an XPath "interpreter".

Diff between XML versions 2.5-1 dated 2009-06-07 and 2.5-3 dated 2009-06-25

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Package WriteXLS updated to version 1.8.1 with previous version 1.8.0 dated 2009-06-17

Author: Marc Schwartz
Title: Cross-platform Perl based R function to create Excel 2003 (XLS) files
Description: Cross-platform perl based R function to create Excel (XLS) files from one or more data frames. Each data frame will be written to a separate named worksheet in the Excel spreadsheet. The worksheet name will be the name of the data frame it contains or can be specified by the user.

Diff between WriteXLS versions 1.8.0 dated 2009-06-17 and 1.8.1 dated 2009-06-25

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Package sde updated to version 2.0.7 with previous version 2.0.6 dated 2009-06-19

Author: Stefano Maria Iacus
Title: Simulation and Inference for Stochastic Differential Equations
Description: Companion package to the book Simulation and Inference for Stochastic Differential Equations With R Examples, ISBN 978-0-387-75838-1, Springer, NY.

Diff between sde versions 2.0.6 dated 2009-06-19 and 2.0.7 dated 2009-06-25

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Package polspline updated to version 1.1.3 with previous version 1.1.2 dated 2009-01-27

Author: Charles Kooperberg
Title: Polynomial spline routines
Description: Routines for the polynomial spline fitting routines hazard regression, hazard estimation with flexible tails, logspline, lspec, polyclass, and polymars, by C. Kooperberg and co-authors

Diff between polspline versions 1.1.2 dated 2009-01-27 and 1.1.3 dated 2009-06-25

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Package mixAK updated to version 0.4 with previous version 0.3 dated 2009-05-07

Author: Arnost Komarek
Title: Mixture of methods including mixtures
Description: This package contains a mixture of statistical methods including the MCMC methods to analyze normal mixtures

Diff between mixAK versions 0.3 dated 2009-05-07 and 0.4 dated 2009-06-25

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Package gputools updated to version 0.1-1 with previous version 0.1-0 dated 2009-04-19

Author: Josh Buckner
Title: A few GPU enabled functions
Description: This package provides R interfaces to a handful of common statistical algorithms. These algorithms are implemented in parallel using a mixture of nVidia's CUDA langauge and CUBLAS library. On a computer equiped with an nVidia GPU some of these functions may be substantially more efficient than native R routines.

Diff between gputools versions 0.1-0 dated 2009-04-19 and 0.1-1 dated 2009-06-25

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Package epicalc updated to version 2.9.0.1 with previous version 2.9.0.0 dated 2009-06-24

Author: Virasakdi Chongsuvivatwong
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.

Diff between epicalc versions 2.9.0.0 dated 2009-06-24 and 2.9.0.1 dated 2009-06-25

 DESCRIPTION       |    8 +++---
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Package epiR updated to version 0.9-18 with previous version 0.9-17 dated 2009-06-02

Author: Mark Stevenson with contributions from Telmo Nunes, Javier Sanchez, and Ron Thornton.
Title: Functions for analysing epidemiological data
Description: A package for analysing epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.

Diff between epiR versions 0.9-17 dated 2009-06-02 and 0.9-18 dated 2009-06-25

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Package deSolve updated to version 1.3 with previous version 1.2-3 dated 2009-01-16

Author: Karline Soetaert , Thomas Petzoldt , R. Woodrow Setzer
Title: General solvers for initial value problems of ordinary differential equations (ODE), partial differential equations (PDE) and differential algebraic equations (DAE)
Description: Functions that solve initial value problems of a system of first-order ordinary differential equations (ODE), of partial differential equations (PDE) and of differential algebraic equations (DAE). The functions provide an interface to the FORTRAN functions lsoda, lsodar, lsode, lsodes of the ODEPACK collection, to the FORTRAN functions dvode and daspk and a C-implementation of solvers of the Runge-Kutta family with fixed or variable time steps. The package contains routines designed for solving ODEs resulting from 1-D, 2-D and 3-D partial differential equations (PDE) that have been converted to ODEs by numerical differencing.

Diff between deSolve versions 1.2-3 dated 2009-01-16 and 1.3 dated 2009-06-25

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 deSolve-1.3/deSolve/src/ddaspk.f                   |    4 
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 deSolve-1.3/deSolve/src/rk_util.h                  |only
 61 files changed, 3964 insertions(+), 3250 deletions(-)

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Package compare updated to version 0.2-2 with previous version 0.2-1 dated 2009-01-23

Author: Paul Murrell
Title: Comparing Objects for Differences
Description: Functions for comparing vectors and data frames.

Diff between compare versions 0.2-1 dated 2009-01-23 and 0.2-2 dated 2009-06-25

 DESCRIPTION                |   18 ++++++++++--------
 NEWS                       |   32 ++++++++++++++++++++++++++++++++
 R/comment.R                |    9 +++++++--
 R/file.R                   |    2 +-
 R/same.R                   |   27 ++++++++++++++++++++-------
 inst/doc/compare-intro.pdf |binary
 inst/doc/fundamentals.pdf  |binary
 7 files changed, 70 insertions(+), 18 deletions(-)

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Package RItools updated to version 0.1-7 with previous version 0.1-6 dated 2009-05-08

Author: Jake Bowers , Mark Fredrickson , and Ben Hansen
Title: Randomization inference tools
Description: Tools for randomization inference.

Diff between RItools versions 0.1-6 dated 2009-05-08 and 0.1-7 dated 2009-06-25

 DESCRIPTION        |    8 ++++----
 R/xtable.xbal.R    |   20 ++++++++++++++++----
 man/xtable.xbal.Rd |    2 +-
 3 files changed, 21 insertions(+), 9 deletions(-)

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New package HWEBayes with initial version 1.0
Package: HWEBayes
Type: Package
Title: Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing.
Version: 1.0
Date: 2009-06-22
Depends: MCMCpack, mvtnorm
Author: Jon Wakefield
Maintainer: Jon Wakefield
Description: Estimation and testing of HWE using Bayesian methods. Three models are currently considered: HWE, a model parameterized in terms of the allele frequencies and a single inbreeding coeffcient \eqn{f}, and the saturated model. Testing is based on Bayes factors.
License: GPL-2
LazyLoad: yes
Packaged: 2009-06-25 04:48:11 UTC; jonno
Repository: CRAN
Date/Publication: 2009-06-25 07:25:11

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Package CDNmoney updated to version 2009.3-1 with previous version 2007.6-1 dated 2007-06-11

Author: Paul Gilbert
Title: Components of Canadian Monetary and Credit Aggregates
Description: Components of Canadian Credit Aggregates and Monetary Aggregates with continuity adjustments.

Diff between CDNmoney versions 2007.6-1 dated 2007-06-11 and 2009.3-1 dated 2009-06-25

 CDNmoney-2007.6-1/CDNmoney/CDNmoney-manual.pdf                     |only
 CDNmoney-2007.6-1/CDNmoney/INDEX                                   |only
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 CDNmoney-2009.3-1/CDNmoney/DESCRIPTION                             |   13 
 CDNmoney-2009.3-1/CDNmoney/NEWS                                    |only
 CDNmoney-2009.3-1/CDNmoney/Rplots.pdf                              |only
 CDNmoney-2009.3-1/CDNmoney/data/CanadianCreditData.R               |  408 +--
 CDNmoney-2009.3-1/CDNmoney/data/CanadianCreditData.asof.6Mar2009.R |only
 CDNmoney-2009.3-1/CDNmoney/data/CanadianMoneyData.R                | 1227 ++++++----
 CDNmoney-2009.3-1/CDNmoney/data/CanadianMoneyData.asof.6Mar2009.R  |only
 CDNmoney-2009.3-1/CDNmoney/inst/doc/CDNmoney.pdf                   |binary
 CDNmoney-2009.3-1/CDNmoney/man/CanadianCreditData.Rd               |   44 
 CDNmoney-2009.3-1/CDNmoney/man/CanadianMoneyData.Rd                |  178 -
 13 files changed, 1130 insertions(+), 740 deletions(-)

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