Fri, 26 Jun 2009

Package wgaim updated to version 0.3 with previous version 0.2-2 dated 2009-05-24

Author: Julian Taylor , Simon Diffey , Ari Verbyla and Brian Cullis .
Title: Whole Genome Average Interval Mapping for QTL detection using mixed models
Description: This package integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL's in linkage maps.

Diff between wgaim versions 0.2-2 dated 2009-05-24 and 0.3 dated 2009-06-26

 DESCRIPTION             |    8 +++---
 R/wgaim.R               |   63 ++++++++++++++++++++++++++++++++----------------
 man/link.map.cross.Rd   |   18 ++++++++-----
 man/link.map.default.Rd |   11 ++++----
 man/link.map.wgaim.Rd   |    9 +++---
 5 files changed, 68 insertions(+), 41 deletions(-)

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Package spgwr updated to version 0.6-2 with previous version 0.5-12 dated 2009-06-18

Author: Roger Bivand and Danlin Yu
Title: Geographically weighted regression
Description: Functions for computing geographically weighted regressions based on work by Chris Brunsdon, Martin Charlton and Stewart Fortheringham, http://ncg.nuim.ie/ncg/GWR/index.htm

Diff between spgwr versions 0.5-12 dated 2009-06-18 and 0.6-2 dated 2009-06-26

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 8 files changed, 209 insertions(+), 81 deletions(-)

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Package spatialsegregation updated to version 2.05 with previous version 1.93 dated 2009-03-10

Author: Tuomas Rajala
Title: Segregation measures for multitype spatial point patterns
Description: Functionals and indices for measuring segregation in multitype spatial point patterns with graph based neighbourhood description. Included indices: Mingling, Shannon, Simpson (also the non-spatial) Included functionals: Mingling, Shannon, Simpson, ISAR. Included neighbourhoods: Geometric, k-nearest neighbours, Gabriel, Delauney.

Diff between spatialsegregation versions 1.93 dated 2009-03-10 and 2.05 dated 2009-06-26

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 spatialsegregation-2.05/spatialsegregation/R/mingling.R                             |    4 
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 spatialsegregation-2.05/spatialsegregation/R/shannon.R                              |   20 +
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Package seewave updated to version 1.5.5 with previous version 1.5.4 dated 2009-03-27

Author: Jerome Sueur , Thierry Aubin , Caroline Simonis
Title: Time wave analysis and graphical representation
Description: seewave provides functions for analysing, manipulating, displaying, editing and synthesizing time waves (particularly sound). This package processes time analysis (oscillograms and envelopes), spectral content, resonance quality factor, entropy, cross correlation and autocorrelation, zero-crossing, dominant frequency, analytic signal, frequency coherence, 2D and 3D spectrograms and many other analyses.

Diff between seewave versions 1.5.4 dated 2009-03-27 and 1.5.5 dated 2009-06-26

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Package rgdal updated to version 0.6-9 with previous version 0.6-8 dated 2009-04-30

Author: Timothy H. Keitt , Roger Bivand , Edzer Pebesma , Barry Rowlingson
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data Abstraction Library (GDAL) (>= 1.3.1) and access to projection/transformation operations from the PROJ.4 library. The GDAL and PROJ.4 libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both GDAL raster and OGR vector map data can be imported into R, and GDAL raster data and OGR vector data exported. Use is made of classes defined in the sp package.

Diff between rgdal versions 0.6-8 dated 2009-04-30 and 0.6-9 dated 2009-06-26

 ChangeLog                       |   37 +++++++++++
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Package psych updated to version 1.0-74 with previous version 1.0-72 dated 2009-06-02

Author: William Revelle
Title: Procedures for Psychological, Psychometric, and Personality Research
Description: A number of routines for personality, psychometrics and experimental psychology. Functions are primarily for scale construction using factor analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Functions for simulating particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. For more information, see the personality-project.org/r webpage.

Diff between psych versions 1.0-72 dated 2009-06-02 and 1.0-74 dated 2009-06-26

 CHANGES                    |   19 
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Package paltran updated to version 1.1 with previous version 1.0-0 dated 2008-05-05

Author: Sven Adler
Title: WA, WA-PLS, MW and POM for paleolimnology
Description: This package contains functions for paleolimnology - wa-regression (see also package analogue by G. Simpson!), wa-pls and the mowing-window approch. The function palplot allows a first plot of the data including a trend analysis. The pom function is just a first test version.

Diff between paltran versions 1.0-0 dated 2008-05-05 and 1.1 dated 2009-06-26

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Package integrOmics updated to version 2.1 with previous version 1.0 dated 2009-05-17

Author: Sebastien Dejean, Ignacio Gonzalez and Kim-Anh Le Cao
Title: Integrate Omics data project
Description: The package supplies two efficients nethodologies: regularized CCA and sparse PLS to unravel relationships between two heterogeneous data sets of size (nxp) and (nxq) where the p and q variables are measured on the same samples or individuals n. These data may come from high throughput technologies, such as omics data, among which transcriptomics, metabolomics or proteomics data that require an integrative or joint analysis. However, integrOmics can also be applied to any other large data sets where p+q>>n. rCCA is a regularized version of CCA to deal with the large number of variables. sPLS allows variable selection in a one step procedure and two frameworks are proposed: regression and canonical analysis. Numerous graphical outputs are provided to help interpreting the results.

Diff between integrOmics versions 1.0 dated 2009-05-17 and 2.1 dated 2009-06-26

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Package infotheo updated to version 1.0.1 with previous version 1.0.0 dated 2009-06-25

Author: Patrick E. Meyer
Title: Information-Theoretic Measures
Description: This package implements various measures of information theory based on several implemented entropy estimators.

Diff between infotheo versions 1.0.0 dated 2009-06-25 and 1.0.1 dated 2009-06-26

 DESCRIPTION     |   10 +++++-----
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Package ZIGP updated to version 3.6 with previous version 3.5 dated 2009-05-13

Author: Vinzenz Erhardt
Title: Zero Inflated Generalized Poisson (ZIGP) regression models
Description: Fit, analyze and compare GP, ZIP and ZIGP regression models

Diff between ZIGP versions 3.5 dated 2009-05-13 and 3.6 dated 2009-06-26

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Package TeachingDemos updated to version 2.4 with previous version 2.3 dated 2008-07-08

Author: Greg Snow
Title: Demonstrations for teaching and learning
Description: This package is a set of demonstration functions that can be used in a classroom to demonstrate statistical concepts, or on your own to better understand the concepts or the programming.

Diff between TeachingDemos versions 2.3 dated 2008-07-08 and 2.4 dated 2009-06-26

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Package Rglpk updated to version 0.3-1 with previous version 0.2-9 dated 2009-03-31

Author: Stefan Theussl and Kurt Hornik
Title: R/GNU Linear Programming Kit Interface
Description: R interface to the GNU Linear Programing Kit (GLPK version 4.37). GLPK is open source software for solving large-scale linear programming (LP), mixed integer linear programming (MILP) and other related problems.

Diff between Rglpk versions 0.2-9 dated 2009-03-31 and 0.3-1 dated 2009-06-26

 Rglpk-0.2-9/Rglpk/R/sparse.R         |only
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 141 files changed, 13 insertions(+), 18 deletions(-)

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Package MatchIt updated to version 2.4-11 with previous version 2.4-10 dated 2009-02-03

Author: Daniel Ho , Elizabeth Stuart , Kosuke Imai , Gary King
Title: MatchIt
Description: MatchIt preprocesses data by selecting approximate matched samples of the treated and control groups with similar covariate distributions, drawing on a large variety of matching methods. After preprocessing data with MatchIt, whatever standard parametric technique one might have used without preprocessing can be used, but the results will be far less model dependent.

Diff between MatchIt versions 2.4-10 dated 2009-02-03 and 2.4-11 dated 2009-06-26

 DESCRIPTION                    |   26 
 R/hist.pscore.R                |   49 
 R/jitter.pscore.R              |   31 
 R/matchit.qqplot.R             |   20 
 R/plot.matchit.R               |    6 
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 inst/doc/balance.tex           |   86 
 inst/doc/figs/hist.pdf         |  452 
 inst/doc/figs/jitterplotnn.pdf | 7126 ++++++++-------
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 inst/doc/index.shtml           |    2 
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 inst/doc/matchit.log           |   67 
 inst/doc/matchit.pdf           |19018 +++++++++++++++++++++++++++--------------
 inst/doc/matchit.tex           |    2 
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 17 files changed, 23643 insertions(+), 11596 deletions(-)

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New package slam with initial version 0.1
Package: slam
Version: 0.1
Date: 2009-06-26
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and matrices, based on index arrays and simple triplet representations, respectively.
Author: Kurt Hornik and David Meyer
Maintainer: David Meyer
Depends: R (>= 2.8.0)
License: GPL-2
Packaged: 2009-06-26 13:36:49 UTC; meyer
Repository: CRAN
Date/Publication: 2009-06-26 13:37:40

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Package kst updated to version 0.1-10 with previous version 0.1-9 dated 2009-06-24

Author: Christina Stahl and David Meyer
Title: Knowledge Space Theory
Description: Knowledge Space Theory is a set-theoretical framework, which proposes mathematical formalisms to operationalize knowledge structures in a particular domain. The kst-package provides basic functionalities to generate, handle, and manipulate knowledge structures and knowledge spaces.

Diff between kst versions 0.1-9 dated 2009-06-24 and 0.1-10 dated 2009-06-26

 DESCRIPTION              |    8 ++++----
 R/reduction.kstructure.R |    2 +-
 inst/doc/kst.pdf         |binary
 3 files changed, 5 insertions(+), 5 deletions(-)

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