Author: Eric Aldrich
Diff between wavelets versions 0.2-4 dated 2009-04-22 and 0.2-5 dated 2009-06-29
Title: A package of funtions for computing wavelet filters, wavelet
transforms and multiresolution analyses
Description: This package contains functions for computing and plotting
discrete wavelet transforms (DWT) and maximal overlap discrete
wavelet transforms (MODWT), as well as their inverses.
Additionally, it contains functionality for computing and
plotting wavelet transform filters that are used in the above
decompositions as well as multiresolution analyses.
DESCRIPTION | 8 ++++----
R/modwt.R | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)
Author: Tim Coelli, Arne Henningsen
Title: Stochastic Frontier Analysis
Description: Maximum Likelihood Estimation of Stochastic Frontier
Production and Cost Functions. Two specifications are
available: the error components specification with time-varying
efficiencies (Battese and Coelli, 1992) and a model
specification in which the firm effects are directly influenced
by a number of variables (Battese and Coelli, 1995).
Diff between frontier versions 0.991-0 dated 2009-06-18 and 0.991-2 dated 2009-06-29
DESCRIPTION | 8 NEWS | 11 R/frontier.R | 2 man/frontier.Rd | 16 src/dis.c | 2 src/front41.f | 47 tests/frontierTest.R | 176 tests/frontierTest.Rout.save |11985 +++++++++++++++++++++++++++++++++++++++---- tests/nestedModels.R | 2 tests/nestedModels.Rout.save | 38 10 files changed, 11236 insertions(+), 1051 deletions(-)
Author: Sanford Weisberg
Diff between dr versions 3.0.3 dated 2008-12-11 and 3.0.4 dated 2009-06-29
Title: Methods for dimension reduction for regression
Description: Functions, methods, and datasets for fitting dimension
reduction regression, using slicing (methods SAVE and SIR),
Principal Hessian Directions (phd, using residuals and the
response), and an iterative IRE. Partial methods, that
condition on categorical predictors are also available. A
variety of tests, and stepwise deletion of predictors, is also
included. Also included is code for computing permutation
tests of dimension. Adding additional methods of estimating
dimension is straightforward. For documentation, see the
vignette in the package. With version 3.0.4, the arguments for
dr.step have been modified.
dr-3.0.3/dr/Rnew |only
dr-3.0.3/dr/inst/doc/.build.timestamp |only
dr-3.0.3/dr/inst/doc/overview.synctex |only
dr-3.0.4/dr/DESCRIPTION | 43 -
dr-3.0.4/dr/NAMESPACE | 2
dr-3.0.4/dr/R/dr.R | 159 ++--
dr-3.0.4/dr/Rv3.0.2 |only
dr-3.0.4/dr/Rwork |only
dr-3.0.4/dr/data/banknote.txt | 402 +++++------
dr-3.0.4/dr/data/mussels.txt | 166 ++--
dr-3.0.4/dr/inst/doc/overview.Rnw | 33
dr-3.0.4/dr/inst/doc/overview.pdf | 1201 ++++++++++++++++------------------
dr-3.0.4/dr/man/dr.directions.Rd | 5
dr-3.0.4/dr/man/drop1.dr.Rd | 12
14 files changed, 1027 insertions(+), 996 deletions(-)
More information about aroma.affymetrix at CRAN
Permanent link
Author: Spencer Graves, Sundar Dorai-Raj, and Romain Francois
Title: RSiteSearch
Description: Alternative interfaces to RSiteSearch
Diff between RSiteSearch versions 1.0-3 dated 2009-05-15 and 1.0-4 dated 2009-06-29
RSiteSearch-1.0-3/RSiteSearch/NAMESPACE |only RSiteSearch-1.0-3/RSiteSearch/inst/brew/results.brew.html |only RSiteSearch-1.0-4/RSiteSearch/DESCRIPTION | 10 +- RSiteSearch-1.0-4/RSiteSearch/NEWS | 6 + RSiteSearch-1.0-4/RSiteSearch/R/HTML.RSiteSearch.R | 2 RSiteSearch-1.0-4/RSiteSearch/R/PackageSum2.R | 20 ++++ RSiteSearch-1.0-4/RSiteSearch/inst/brew/default |only RSiteSearch-1.0-4/RSiteSearch/inst/brew/iframe |only RSiteSearch-1.0-4/RSiteSearch/man/HTML.Rd | 4 RSiteSearch-1.0-4/RSiteSearch/man/PackageSum2.Rd | 66 ++++++++++++-- RSiteSearch-1.0-4/RSiteSearch/man/PackageSummary.Rd | 10 +- RSiteSearch-1.0-4/RSiteSearch/man/RSiteSearch.function.Rd | 3 RSiteSearch-1.0-4/RSiteSearch/man/hits.Rd | 1 RSiteSearch-1.0-4/RSiteSearch/man/sortRSiteSearch.Rd | 1 RSiteSearch-1.0-4/RSiteSearch/man/summary.RSiteSearch.Rd | 4 RSiteSearch-1.0-4/RSiteSearch/man/unionRSiteSearch.Rd | 3 16 files changed, 111 insertions(+), 19 deletions(-)
Author: Lester Yuan, Tom Stockton, Doug Bronson, Pasha Minallah, and
Mark Fitzgerald
Title: Provides a GUI to several statistical methods useful for causal
assessment.
Description: Using JGR, provides a GUI to several statistical methods -
scatterplot, boxplot, linear regression, generalized linear
regression, quantile, regression, conditional probability
calculations, and regression trees.
Diff between CADStat versions 2.1-17 dated 2009-01-13 and 2.1-21 dated 2009-06-29
CADStat-2.1-17/CADStat/R/bioinfer.JGR.R |only CADStat-2.1-17/CADStat/R/bioinfer1.JGR.r |only CADStat-2.1-17/CADStat/R/bioinfer2.JGR.r |only CADStat-2.1-17/CADStat/R/bioinfer3.JGR.r |only CADStat-2.1-17/CADStat/R/dup.sel.r |only CADStat-2.1-17/CADStat/R/get.duplicates.r |only CADStat-2.1-17/CADStat/R/get.mergedfile.r |only CADStat-2.1-17/CADStat/R/get.mismatch.r |only CADStat-2.1-17/CADStat/R/get.otu.jgr.r |only CADStat-2.1-17/CADStat/man/bioinfer.JGR.Rd |only CADStat-2.1-17/CADStat/man/bioinfer1.JGR.Rd |only CADStat-2.1-17/CADStat/man/bioinfer2.JGR.Rd |only CADStat-2.1-17/CADStat/man/bioinfer3.JGR.Rd |only CADStat-2.1-17/CADStat/man/dup.sel.Rd |only CADStat-2.1-17/CADStat/man/get.duplicates.Rd |only CADStat-2.1-17/CADStat/man/get.mergedfile.Rd |only CADStat-2.1-17/CADStat/man/get.mismatch.Rd |only CADStat-2.1-17/CADStat/man/get.otu.jgr.Rd |only CADStat-2.1-21/CADStat/DESCRIPTION | 33 ++++++++++++++----------- CADStat-2.1-21/CADStat/R/bioinfer.new.JGR.R |only CADStat-2.1-21/CADStat/R/buildresultsXML.R | 8 +++--- CADStat-2.1-21/CADStat/R/cor.JGR.R | 2 - CADStat-2.1-21/CADStat/R/gisdt.subset.R | 6 +++- CADStat-2.1-21/CADStat/R/zzz.R | 10 ++----- CADStat-2.1-21/CADStat/chm |only CADStat-2.1-21/CADStat/inst/.svn |only CADStat-2.1-21/CADStat/inst/doc/.svn |only CADStat-2.1-21/CADStat/inst/java/cadstat.jar |binary CADStat-2.1-21/CADStat/man/bioinfer.new.JGR.Rd |only 29 files changed, 32 insertions(+), 27 deletions(-)
Author: Holger Schabenberger
Title: Spatial count regression
Description: Fit spatial CAR count regression models using MCMC
Diff between spatcounts versions 1.0 dated 2009-06-08 and 1.1 dated 2009-06-29
DESCRIPTION | 8 ++++---- R/Clarketest.R | 3 +-- R/LogLike.R | 23 ++++++++++++++++++----- R/Vuongtest.R | 2 -- man/Clarketest.Rd | 4 ++-- man/DIC.Rd | 2 +- man/LogLike.Rd | 2 +- man/Vuongtest.Rd | 4 ++-- man/est.sc.Rd | 15 +++++++++------ man/spatcounts-package.Rd | 2 +- 10 files changed, 39 insertions(+), 26 deletions(-)
Author: Karline Soetaert
Diff between rootSolve versions 1.3 dated 2009-02-20 and 1.4 dated 2009-06-29
Title: Nonlinear root finding, equilibrium and steady-state analysis of
ordinary differential equations
Description: Routines to find the root of nonlinear functions, and to
perform steady-state and equilibrium analysis of ordinary
differential equations (ODE). Includes routines that: (1)
generate gradient and Jacobian matrices (full and banded), (2)
find roots of non-linear equations by the Newton-Raphson
method, (3) estimate steady-state conditions of a system of
(differential) equations in full, banded or sparse form, using
the Newton-Raphson method, or by dynamically running, (4) solve
the steady-state conditions for uni-and multicomponent 1-D,
2-D, and 3-D partial differential equations, that have been
converted to ODEs by numerical differencing (using the
method-of-lines approach). Includes fortran code.
rootSolve-1.3/rootSolve/R/Roots.r |only
rootSolve-1.3/rootSolve/R/runsteady.r |only
rootSolve-1.3/rootSolve/R/stode.r |only
rootSolve-1.3/rootSolve/R/stodes.r |only
rootSolve-1.3/rootSolve/demo/Jacobandroots.r |only
rootSolve-1.3/rootSolve/inst/doc/rootSolve.rnw |only
rootSolve-1.3/rootSolve/inst/dynload/anoxmod.r |only
rootSolve-1.4/rootSolve/DESCRIPTION | 42
rootSolve-1.4/rootSolve/NAMESPACE | 4
rootSolve-1.4/rootSolve/R/gradient.R |only
rootSolve-1.4/rootSolve/R/hessian.R |only
rootSolve-1.4/rootSolve/R/internal.R |only
rootSolve-1.4/rootSolve/R/jacobian.band.R |only
rootSolve-1.4/rootSolve/R/jacobian.full.R |only
rootSolve-1.4/rootSolve/R/multiroot.R |only
rootSolve-1.4/rootSolve/R/runsteady.R |only
rootSolve-1.4/rootSolve/R/steady.1D.R |only
rootSolve-1.4/rootSolve/R/steady.2D.R |only
rootSolve-1.4/rootSolve/R/steady.3D.R |only
rootSolve-1.4/rootSolve/R/steady.R |only
rootSolve-1.4/rootSolve/R/steady.band.R |only
rootSolve-1.4/rootSolve/R/stode.R |only
rootSolve-1.4/rootSolve/R/stodes.R |only
rootSolve-1.4/rootSolve/R/uniroot.all.R |only
rootSolve-1.4/rootSolve/demo/Jacobandroots.R |only
rootSolve-1.4/rootSolve/demo/Steadystate.R | 1
rootSolve-1.4/rootSolve/inst/CITATION |only
rootSolve-1.4/rootSolve/inst/doc/rootSolve.Rnw |only
rootSolve-1.4/rootSolve/inst/doc/rootSolve.pdf |49044 +++++++++++++------------
rootSolve-1.4/rootSolve/inst/doc/vignettes.bib | 349
rootSolve-1.4/rootSolve/inst/dynload/anoxmod.R |only
rootSolve-1.4/rootSolve/man/gradient.Rd | 70
rootSolve-1.4/rootSolve/man/hessian.Rd | 59
rootSolve-1.4/rootSolve/man/jacobian.band.Rd | 138
rootSolve-1.4/rootSolve/man/jacobian.full.Rd | 106
rootSolve-1.4/rootSolve/man/multiroot.1D.Rd |only
rootSolve-1.4/rootSolve/man/multiroot.Rd | 159
rootSolve-1.4/rootSolve/man/rootSolve.Rd | 64
rootSolve-1.4/rootSolve/man/runsteady.Rd | 425
rootSolve-1.4/rootSolve/man/steady.1D.Rd | 194
rootSolve-1.4/rootSolve/man/steady.2D.Rd | 206
rootSolve-1.4/rootSolve/man/steady.3D.Rd |only
rootSolve-1.4/rootSolve/man/steady.Rd | 111
rootSolve-1.4/rootSolve/man/steady.band.Rd | 127
rootSolve-1.4/rootSolve/man/stode.Rd | 432
rootSolve-1.4/rootSolve/man/stodes.Rd | 283
rootSolve-1.4/rootSolve/man/uniroot.all.Rd | 86
rootSolve-1.4/rootSolve/src/call_runsteady.c | 4
rootSolve-1.4/rootSolve/src/call_steady.c | 2
rootSolve-1.4/rootSolve/src/call_stsparse.c | 21
rootSolve-1.4/rootSolve/src/sparse.f | 411
rootSolve-1.4/rootSolve/src/sparsecoeff.f | 230
rootSolve-1.4/rootSolve/src/steady.f | 10
53 files changed, 28888 insertions(+), 23690 deletions(-)
Author: Christian B. Pipper
Diff between multmod versions 0.3 dated 2009-06-25 and 0.4 dated 2009-06-29
Title: Testing of multiple outcomes
Description: Testing of multiple outcomes using i.i.d. decompositions
DESCRIPTION | 6 +++---
NEWS | 3 ++-
R/amtest.R | 2 +-
man/amtest.Rd | 10 ++++++----
man/mn6.9.Rd | 2 +-
5 files changed, 13 insertions(+), 10 deletions(-)
Author: Martin Schlather
Diff between RandomFields versions 1.3.37 dated 2009-01-26 and 1.3.39 dated 2009-06-29
Title: Simulation and Analysis of Random Fields
Description: Simulation of Gaussian and extreme value random fields;
conditional simulation; kriging
DESCRIPTION | 14 ++++++-----
src/MPP.cc | 2 -
src/RFsimu.cc | 6 ++--
src/RFsimu.h | 6 ++--
src/RandomFields.h | 4 +++
src/Xempvario.cc | 4 +--
src/auxiliary.cc | 66 +++++++++++++++++++++++++++++++++++++++++++++++++++++
7 files changed, 87 insertions(+), 15 deletions(-)
Author: Juha Karvanen
Title: Independent component analysis using score functions from the
Pearson system
Description: The Pearson-ICA algorithm is a mutual information-based
method for blind separation of statistically independent source
signals. It has been shown that the minimization of mutual
information leads to iterative use of score functions, i.e.
derivatives of log densities. The Pearson system allows
adaptive modeling of score functions. The flexibility of the
Pearson system makes it possible to model a wide range of
source distributions including asymmetric distributions. The
algorithm is designed especially for problems with asymmetric
sources but it works for symmetric sources as well.
Diff between PearsonICA versions 1.2-3 dated 2008-10-10 and 1.2-4 dated 2009-06-29
DESCRIPTION | 36 ++++++++++++++++++++++-------------- 1 file changed, 22 insertions(+), 14 deletions(-)
Author: Martin Schlather
Diff between MarkedPointProcess versions 0.2.9 dated 2008-08-22 and 0.2.11 dated 2009-06-29
More information about MarkedPointProcess at CRAN
Title: Analysis of Marks of Marked Point Processes
Description: Non-parametric Analysis of the Marks of Marked Point
Processes
DESCRIPTION | 9 ++++++---
src/MPPanalyse.cc | 2 +-
src/MPPbasics.cc | 23 ++++++++++++++++++++---
3 files changed, 27 insertions(+), 7 deletions(-)
Permanent link
Author: Juha Karvanen
Title: L-moments and quantile mixtures
Description: The Lmoments package contains functions to estimate
L-moments and trimmed L-moments from the data. The package also
contains functions to estimate the parameters of the normal
polynomial quantile mixture and the Cauchy polynomial quantile
mixture from L-moments and trimmed L-moments.
Diff between Lmoments versions 1.1-2 dated 2007-02-11 and 1.1-3 dated 2009-06-29
DESCRIPTION | 31 +++++++++++++++++-------------- inst/CITATION | 8 ++++---- inst/News | 5 ++++- man/Lmoments.Rd | 25 +++++++++++++++---------- man/cauchypoly.Rd | 6 +++--- man/covnormpoly4.Rd | 6 +++--- man/data2cauchypoly.Rd | 6 +++--- man/data2normpoly.Rd | 6 +++--- man/normpoly.Rd | 6 +++--- man/t1lmoments.Rd | 6 +++--- 10 files changed, 58 insertions(+), 47 deletions(-)