Author: Douglas Bates and Ana Ines Vazquez
Title: Pedigree-based mixed-effects models
Description: Fit pedigree-based mixed-effects models.
Diff between pedigreemm versions 0.2-2 dated 2009-06-02 and 0.2-3 dated 2009-07-02
DESCRIPTION | 8 ++++---- R/pedigree.R | 15 +++++++++++++++ 2 files changed, 19 insertions(+), 4 deletions(-)
Author: Markus Loecher, Sense Networks
Diff between HTMLUtils versions 0.1.2 dated 2009-06-08 and 0.1.3 dated 2009-07-02
Title: Facilitates automated HTML report creation
Description: Facilitates automated HTML report creation, in particular
framed HTML pages and dynamically sortable tables.
DESCRIPTION | 8 ++++----
R/BasicHTML.R | 21 +++++++++++++++------
R/FramedHTML.R | 38 ++++++++++++++++++++++++++++++--------
R/myHTMLInitFile.R | 15 ++++++++++++++-
man/BasicHTML.Rd | 10 ++++++----
man/FramedHTML.Rd | 13 ++++++++-----
man/HTMLUtils-package.Rd | 4 ++--
man/InstallJSC.Rd | 2 +-
man/myHTMLInitFile.Rd | 3 ++-
9 files changed, 82 insertions(+), 32 deletions(-)
Author: Eva Herrmann
Diff between lokern versions 1.0-7 dated 2009-04-03 and 1.0-8 dated 2009-07-02
Title: Kernel Regression Smoothing with Local or Global Plug-in
Bandwidth
Description: Kernel regression smoothing with adaptive local or global
plug-in bandwidth selection.
ChangeLog | 14 ++
DESCRIPTION | 8 -
R/glkerns.R | 19 ++--
demo |only
man/glkerns.Rd | 2
src/glkerns.f | 15 ++-
tests/glk1.R | 11 ++
tests/glk1.Rout.save | 242 ++++++++++++++++++++++++++++++++++++++++++++++++++-
8 files changed, 293 insertions(+), 18 deletions(-)
Author: Delia Bailey
Diff between pcse versions 1.6 dated 2008-11-16 and 1.7 dated 2009-07-02
Title: Panel-Corrected Standard Error Estimation in R
Description: This package contains a function to estimate
panel-corrected standard errors. Data may contain balanced or
unbalanced panels.
DESCRIPTION | 15 ++++++++++-----
R/pcse.R | 27 +++++++++++++--------------
R/summary.pcse.R | 1 -
R/vcovPC.R |only
demo/pcse.R | 8 ++++++++
inst |only
man/pcse-package.Rd | 4 ++--
man/summary.pcse.Rd | 4 ++--
man/vcovPC.Rd |only
9 files changed, 35 insertions(+), 24 deletions(-)
Author: James Honaker
Diff between Amelia versions 1.2-2 dated 2009-04-27 and 1.2-9 dated 2009-07-02
Title: Amelia II: A Program for Missing Data
Description: Amelia II "multiply imputes" missing data in a single
cross-section (such as a survey), from a time series (like
variables collected for each year in a country), or from a
time-series-cross-sectional data set (such as collected by
years for each of several countries). Amelia II implements our
bootstrapping-based algorithm that gives essentially the same
answers as the standard IP or EMis approaches, is usually
considerably faster than existing approaches and can handle
many more variables. Unlike Amelia I and other statistically
rigorous imputation software, it virtually never crashes (but
please let us know if you find to the contrary!). The program
also generalizes existing approaches by allowing for trends in
time series across observations within a cross-sectional unit,
as well as priors that allow experts to incorporate beliefs
they have about the values of missing cells in their data.
Amelia II also includes useful diagnostics of the fit of
multiple imputation models. The program works from the R
command line or via a graphical user interface that does not
require users to know R.
Amelia-1.2-2/Amelia/inst/doc/amelia.aux |only
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Amelia-1.2-9/Amelia/DESCRIPTION | 10
Amelia-1.2-9/Amelia/R/amcheck.r | 203
Amelia-1.2-9/Amelia/R/ameliagui.r | 14
Amelia-1.2-9/Amelia/R/diag.r | 4
Amelia-1.2-9/Amelia/R/emb.r | 99
Amelia-1.2-9/Amelia/R/missmap.R | 117
Amelia-1.2-9/Amelia/R/prep.r | 38
Amelia-1.2-9/Amelia/R/summary.amelia.R | 4
Amelia-1.2-9/Amelia/R/write.amelia.R | 1
Amelia-1.2-9/Amelia/data/freetrade.RData |only
Amelia-1.2-9/Amelia/inst/doc/Makefile | 27
Amelia-1.2-9/Amelia/inst/doc/amelia.Rnw |only
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Amelia-1.2-9/Amelia/man/missmap.Rd | 11
72 files changed, 20915 insertions(+), 4632 deletions(-)
Author: Adrian Baddeley
Diff between spatstat versions 1.15-4 dated 2009-06-16 and 1.16-0 dated 2009-07-02
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Contains
functions for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, and pixel images. Point
process models can be fitted to point pattern data. Cluster
type models are fitted by the method of minimum contrast. Very
general Gibbs point process models can be fitted to point
pattern data using a function ppm similar to lm or glm. Models
may include dependence on covariates, interpoint interaction
and dependence on marks. Fitted models can be simulated
automatically. Also provides facilities for formal inference
(such as chi-squared tests) and model diagnostics (including
simulation envelopes, residuals, residual plots and Q-Q plots).
.Rbuildindex.5904 |only
DESCRIPTION | 10
INDEX | 10
R/Fest.S | 186 ++++++++-----
R/Gest.S | 162 ++++++-----
R/Gmulti.S | 189 ++++++++-----
R/Iest.R | 66 ++--
R/Jest.S | 77 ++++-
R/Jmulti.S | 84 ++++--
R/Kinhom.S | 18 -
R/Kmeasure.R | 223 +++++++++++-----
R/Kmulti.inhom.R | 28 +-
R/alltypes.R | 6
R/blur.R | 4
R/deldir.R | 12
R/density.ppp.R | 43 ++-
R/distbdry.S | 16 -
R/envelope.R | 28 +-
R/fv.R | 47 ++-
R/images.R | 47 +++
R/iplot.R |only
R/istat.R |only
R/plot.fasp.R | 7
R/plot.fv.R | 24 +
R/plot.ppp.S | 75 ++---
R/ripras.S | 2
R/superimpose.R | 5
R/tess.R | 32 ++
R/wingeom.S | 47 +++
demo/spatstat.R | 14 -
inst/doc/shapefiles.pdf | 659 ++++++++++++++++++++++++------------------------
man/00spatstat.Rd | 22 +
man/AreaInter.Rd | 2
man/BadGey.Rd | 8
man/Fest.Rd | 33 +-
man/Gcross.Rd | 17 +
man/Gdot.Rd | 11
man/Gest.Rd | 38 +-
man/Gmulti.Rd | 13
man/Hest.Rd | 2
man/Iest.Rd | 8
man/Jcross.Rd | 12
man/Jdot.Rd | 14 -
man/Jest.Rd | 10
man/Jmulti.Rd | 13
man/Kcross.Rd | 2
man/Kcross.inhom.Rd | 11
man/Kdot.Rd | 2
man/Kdot.inhom.Rd | 8
man/Kest.fft.Rd | 2
man/Lcross.inhom.Rd |only
man/Ldot.inhom.Rd |only
man/LennardJones.Rd | 12
man/Lest.Rd | 1
man/Linhom.Rd | 5
man/MultiStrauss.Rd | 3
man/PairPiece.Rd | 4
man/SatPiece.Rd | 3
man/Strauss.Rd | 7
man/StraussHard.Rd | 5
man/adaptive.density.Rd | 2
man/alltypes.Rd | 64 ++--
man/convexhull.Rd |only
man/convexhull.xy.Rd | 1
man/internal.Rd | 18 +
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man/is.convex.Rd |only
man/istat.Rd |only
man/localK.Rd | 2
man/markcorr.Rd | 4
man/plot.fasp.Rd | 6
man/plot.fv.Rd | 23 +
man/plot.ppp.Rd | 1
man/ppm.Rd | 8
man/qqplot.ppm.Rd | 6
tests/rmhBasic.R | 4
tests/rmhErrors.R | 2
tests/rmhMulti.R | 2
78 files changed, 1627 insertions(+), 905 deletions(-)
Author: Jose L. Izquierdo
Diff between Metabonomic versions 3.2 dated 2009-07-01 and 3.2.1 dated 2009-07-02
Title: GUI for Metabonomic Analysis
Description: Graphical User Interface for the Metabonomic Analysis
(Baseline, Normalization, Peak Detection, PCA, PLS, Nearest
Neigbourgt, Neural Network) developed to make easy this data
analysis.
Metabonomic-3.2.1/Metabonomic/DESCRIPTION | 14
Metabonomic-3.2.1/Metabonomic/R/Met.Aligm.R | 36 -
Metabonomic-3.2.1/Metabonomic/R/Met.Order.R | 32 -
Metabonomic-3.2.1/Metabonomic/R/Met.PCA.R | 421 +++++++++++++------
Metabonomic-3.2.1/Metabonomic/R/Met.PLS2.R | 10
Metabonomic-3.2.1/Metabonomic/R/Met.Selection.R | 34 -
Metabonomic-3.2.1/Metabonomic/R/Met.peak.detection.R | 9
Metabonomic-3.2.1/Metabonomic/R/Met.spectrum.2.R | 67 ---
Metabonomic-3.2.1/Metabonomic/R/Metabonomic.R | 2
Metabonomic-3.2.1/Metabonomic/R/TABLE.R | 28 -
Metabonomic-3.2.1/Metabonomic/R/showData2.R | 28 -
Metabonomic-3.2/Metabonomic/R/Met.Outliers.R |only
Metabonomic-3.2/Metabonomic/man/Met.Outliers.Rd |only
13 files changed, 354 insertions(+), 327 deletions(-)
Author: P. Neytchev, P. Filzmoser, R. Patnaik, A. Eisl and R. Boubela
Title: Trimmed Maximum Likelihood Estimation
Description: TLE implements a general framework for robust fitting of
finite mixture models. Parameter estimation is performed using
the EM algorithm.
Diff between tlemix versions 0.0.5 dated 2009-05-06 and 0.0.6 dated 2009-07-02
DESCRIPTION | 10 - inst/doc/tlemix-intro.pdf | 439 ++++++++++++++++++++++------------------------ 2 files changed, 219 insertions(+), 230 deletions(-)
Author: Peter Ruckdeschel
Title: Utilities for Sweave together with TeX listings package
Description: provides utilities for defining R / Rd as
Tex-package-listings "language" and including R / Rd source
file (sniplets) copied from R-forge in its most recent version
(or another url) thereby avoiding inconsistencies between
vignette and documented source code
Diff between SweaveListingUtils versions 0.2 dated 2009-04-15 and 0.3 dated 2009-07-02
DESCRIPTION | 15 ++-- R/SweaveListingOptions.R | 9 ++ R/SweaveListingUtils.R | 75 ++++++++++++++++++++++- R/keywordsStyle.R | 3 inst/MASKING | 15 +++- inst/NEWS | 24 +++++++ inst/TeX/Rdlisting.sty | 15 ++-- inst/doc/ExampleSweaveListingUtils.Rnw | 61 +++++++++++++++---- inst/doc/ExampleSweaveListingUtils.pdf |binary inst/doc/cleanup.tex |only inst/doc/preamble.tex | 2 inst/doc/preambleExp.tex | 104 +++++++++++++++++++++------------ man/0SweaveListingUtils-package.Rd | 7 +- man/SweaveListingOptions.Rd | 8 +- man/SweaveListingPreparations.Rd | 30 +++++++++ man/copySourceFromRForge.Rd | 6 - man/library.Rd | 8 ++ man/lstinputSourceFromRForge.Rd | 10 +-- man/readSourceFromRForge.Rd | 4 - 19 files changed, 306 insertions(+), 90 deletions(-)
More information about SweaveListingUtils at CRAN
Permanent link
Author: Derek Young Tatiana Benaglia Didier Chauveau Ryan Elmore Tom
Hettmansperger David Hunter Hoben Thomas Fengjuan Xuan
Title: Tools for analyzing finite mixture models
Description: A collection of R functions for analyzing finite mixture
models. This package is based upon work supported by the
National Science Foundation under Grant No. SES-0518772.
Diff between mixtools versions 0.4.0 dated 2009-04-28 and 0.4.1 dated 2009-07-02
DESCRIPTION | 9 +++--- R/normalmixEM.R | 65 ++++++++++++++++++++++++--------------------- R/parse.constraints.R |only R/tauequivnormalmixEM.R |only R/zzz.R | 1 man/normalmixEM.Rd | 20 +++++++++++++ man/tauequivnormalmixEM.Rd |only 7 files changed, 61 insertions(+), 34 deletions(-)
Author: G. Grothendieck
Title: Utilities for strings and function arguments.
Description: gsubfn is like gsub but can take a replacement function or
certain other objects instead of the replacement string.
Matches and back references are input to the replacement
function and replaced by the function output. gsubfn can be
used to split strings based on content rather than delimiters
and for quasi-perl-style string interpolation. The package also
has facilities for translating formulas to functions and
allowing such formulas in function calls instead of functions.
This can be used with R functions such as apply, sapply,
lapply, optim, integrate, xyplot, Filter and any other function
that expects another function as an input argument or functions
like cat or sql calls that may involve strings where
substitution is desirable.
Diff between gsubfn versions 0.3-8 dated 2008-12-15 and 0.5-0 dated 2009-07-02
DESCRIPTION | 48 +- R/fn.R | 13 R/gsubfn.R | 70 ++++ inst/NEWS | 9 inst/THANKS | 1 inst/doc/Rplots.pdf | 48 +- inst/doc/gsubfn.R | 2 inst/doc/gsubfn.Rnw | 10 inst/doc/gsubfn.pdf | 856 +++++++++++++++++++++++++++------------------------- man/fn.Rd | 1 man/gsubfn.Rd | 2 man/strapply.Rd | 41 ++ 12 files changed, 628 insertions(+), 473 deletions(-)
Author: Edzer J. Pebesma
Diff between gstat versions 0.9-60 dated 2009-05-15 and 0.9-61 dated 2009-07-02
Title: geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator
(co)simulation; variogram and variogram map plotting utility
functions.
DESCRIPTION | 8
INDEX | 1
NAMESPACE | 1
R/krigeTg.R |only
R/predict.gstat.R | 5
inst/ChangeLog | 131
inst/doc/gstat.pdf |29029 ++++++++++++++++++++++++++---------------------------
man/krigeTg.Rd |only
man/pcb.Rd | 2
src/data.c | 10
src/lex.c | 109
src/lex.l | 3
src/random.c | 2
src/version.h | 6
14 files changed, 14536 insertions(+), 14771 deletions(-)
Author: Pierre Chausse
Diff between gmm versions 1.0-6 dated 2009-05-12 and 1.0-7 dated 2009-07-02
Title: Generalized Method of Moments and Generalized Empirical
Likelihood
Description: It is a complete suite to estimate models based on moment
conditions. It includes the two step Generalized method of
moments (GMM) of Hansen(1982), the iterated GMM and continuous
updated estimator (CUE) of Hansen-Eaton-Yaron(1996) and several
methods that belong to the Generalized Empirical Likelihood
(GEL) family of estimators, as presented by Smith(1997),
Kitamura(1997), Newey-Smith(2004) and Anatolyev(2005).
DESCRIPTION | 10
NEWS | 6
R/gmm_tools.R | 30 +
data/Finance.rda |binary
inst/doc/gmm_with_R.pdf | 800 ++++++++++++++++++++++++------------------------
inst/doc/gmm_with_R.rnw | 10
man/Finance.Rd | 72 +---
man/gmm.Rd | 81 ++--
man/kweights2.Rd |only
man/lintest.Rd | 2
man/rho.Rd | 19 -
11 files changed, 512 insertions(+), 518 deletions(-)
Author: Friedrich Leisch
Title: Flexible Cluster Algorithms
Description: The main function kcca implements a general framework for
k-centroids cluster analysis supporting arbitrary distance
measures and centroid computation. Further cluster methods
include hard competitive learning, neural gas, and QT
clustering. There are numerous visualization methods for
cluster results (neighborhood graphs, convex cluster hulls,
barcharts of centroids, ...), and bootstrap methods for the
analysis of cluster stability.
Diff between flexclust versions 1.2-0 dated 2009-06-19 and 1.2-1 dated 2009-07-02
DESCRIPTION | 8 +-- NEWS | 16 ++++++- R/AAA-classes.R | 9 ++++ R/bootstrap.R | 110 ++++++++++++++++++++++++++++++++++++++++++++++++--- R/utils.R | 6 -- man/bootFlexclust.Rd | 22 +++++++--- man/stepFlexclust.Rd | 4 + 7 files changed, 153 insertions(+), 22 deletions(-)