Wed, 22 Jul 2009

Package zoo updated to version 1.5-8 with previous version 1.5-7 dated 2009-07-22

Author: Achim Zeileis, Gabor Grothendieck
Title: Z's ordered observations
Description: An S3 class with methods for totally ordered indexed observations. It is particularly aimed at irregular time series of numeric vectors/matrices and factors. zoo's key design goals are independence of a particular index/date/time class and consistency with ts and base R by providing methods to extend standard generics.

Diff between zoo versions 1.5-7 dated 2009-07-22 and 1.5-8 dated 2009-07-22

 DESCRIPTION               |    6 
 NAMESPACE                 |    4 
 NEWS                      |    5 
 R/as.zoo.R                |    7 
 R/yearmon.R               |    4 
 R/yearqtr.R               |    4 
 inst/doc/zoo-faq.pdf      |   10 -
 inst/doc/zoo-quickref.pdf |   14 -
 inst/doc/zoo.pdf          |  393 +++++++++++++++++++++++-----------------------
 9 files changed, 228 insertions(+), 219 deletions(-)

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Package ctv updated to version 0.5-3 with previous version 0.5-2 dated 2009-06-03

Author: Achim Zeileis, Kurt Hornik
Title: CRAN Task Views
Description: Server-side and client-side tools for task views to CRAN-style repositories

Diff between ctv versions 0.5-2 dated 2009-06-03 and 0.5-3 dated 2009-07-22

 ctv-0.5-2/ctv/inst/ctv/Distributions.html            |only
 ctv-0.5-3/ctv/DESCRIPTION                            |    8 
 ctv-0.5-3/ctv/NEWS                                   |    6 
 ctv-0.5-3/ctv/R/ctv-server.R                         |    2 
 ctv-0.5-3/ctv/inst/ctv/Bayesian.ctv                  |  295 +++++++++++--------
 ctv-0.5-3/ctv/inst/ctv/ChemPhys.ctv                  |   73 +++-
 ctv-0.5-3/ctv/inst/ctv/Distributions.ctv             |  126 +++++---
 ctv-0.5-3/ctv/inst/ctv/Econometrics.ctv              |   16 -
 ctv-0.5-3/ctv/inst/ctv/Environmetrics.ctv            |   51 ++-
 ctv-0.5-3/ctv/inst/ctv/ExperimentalDesign.ctv        |   81 +++--
 ctv-0.5-3/ctv/inst/ctv/Finance.ctv                   |   14 
 ctv-0.5-3/ctv/inst/ctv/HighPerformanceComputing.ctv  |    4 
 ctv-0.5-3/ctv/inst/ctv/MachineLearning.ctv           |    8 
 ctv-0.5-3/ctv/inst/ctv/Multivariate.ctv              |   18 -
 ctv-0.5-3/ctv/inst/ctv/NaturalLanguageProcessing.ctv |    8 
 ctv-0.5-3/ctv/inst/ctv/Optimization.ctv              |   18 -
 ctv-0.5-3/ctv/inst/ctv/Psychometrics.ctv             |    9 
 ctv-0.5-3/ctv/inst/ctv/SocialSciences.ctv            |    6 
 ctv-0.5-3/ctv/inst/ctv/Spatial.ctv                   |    7 
 ctv-0.5-3/ctv/inst/ctv/TimeSeries.ctv                |   11 
 ctv-0.5-3/ctv/inst/doc/ctv-howto.pdf                 |binary
 21 files changed, 486 insertions(+), 275 deletions(-)

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Package zoo updated to version 1.5-7 with previous version 1.5-6 dated 2009-05-21

Author: Achim Zeileis, Gabor Grothendieck
Title: Z's ordered observations
Description: An S3 class with methods for totally ordered indexed observations. It is particularly aimed at irregular time series of numeric vectors/matrices and factors. zoo's key design goals are independence of a particular index/date/time class and consistency with ts and base R by providing methods to extend standard generics.

Diff between zoo versions 1.5-6 dated 2009-05-21 and 1.5-7 dated 2009-07-22

 zoo-1.5-6/zoo/inst/doc/foo.rda          |only
 zoo-1.5-6/zoo/inst/doc/plot-axes.pdf    |only
 zoo-1.5-6/zoo/inst/doc/plot-axes.tex    |only
 zoo-1.5-7/zoo/DESCRIPTION               |   16 -
 zoo-1.5-7/zoo/NAMESPACE                 |   39 +++
 zoo-1.5-7/zoo/NEWS                      |   28 ++
 zoo-1.5-7/zoo/R/ORDER.R                 |    4 
 zoo-1.5-7/zoo/R/aggregate.zoo.R         |   13 +
 zoo-1.5-7/zoo/R/as.zoo.R                |   26 +-
 zoo-1.5-7/zoo/R/as.zoo.tis.R            |only
 zoo-1.5-7/zoo/R/na.trim.R               |   10 
 zoo-1.5-7/zoo/R/window.zoo.R            |    9 
 zoo-1.5-7/zoo/R/xyplot.zoo.R            |   67 +++++
 zoo-1.5-7/zoo/R/yearmon.R               |   40 +++
 zoo-1.5-7/zoo/R/yearqtr.R               |   33 ++
 zoo-1.5-7/zoo/R/zoo.R                   |   74 +++++-
 zoo-1.5-7/zoo/inst/doc/zoo-faq.pdf      |   10 
 zoo-1.5-7/zoo/inst/doc/zoo-quickref.pdf |   14 -
 zoo-1.5-7/zoo/inst/doc/zoo.pdf          |  393 +++++++++++++++-----------------
 zoo-1.5-7/zoo/man/aggregate.zoo.Rd      |    2 
 zoo-1.5-7/zoo/man/as.zoo.Rd             |   20 +
 zoo-1.5-7/zoo/man/na.trim.Rd            |    7 
 zoo-1.5-7/zoo/man/xyplot.zoo.Rd         |   20 +
 zoo-1.5-7/zoo/man/yearmon.Rd            |   39 ++-
 zoo-1.5-7/zoo/man/yearqtr.Rd            |   29 ++
 zoo-1.5-7/zoo/man/zoo.Rd                |    4 
 26 files changed, 639 insertions(+), 258 deletions(-)

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New package safeBinaryRegression with initial version 0.1-2
Package: safeBinaryRegression
Version: 0.1-2
Date: 2009-07-21
Title: Safe Binary Regression
Author: Kjell Konis
Maintainer: Kjell Konis
Depends: R (>= 2.9.1), lpSolveAPI (>= 5.5.0.14)
Description: Overloads the glm function in the stats package so that a test for the existence of the maximum likelihood estimate is included in the fitting procedure for binary regression models.
License: GPL-2
Packaged: 2009-07-22 09:44:25 UTC; konis
Repository: CRAN
Date/Publication: 2009-07-22 12:45:56

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New package exact2x2 with initial version 0.9-1
Package: exact2x2
Type: Package
Title: Exact Conditional Tests and Confidence Intervals for 2x2 tables
Version: 0.9-1
Date: 2009-07-15
Author: M.P. Fay
Maintainer: M.P. Fay
Depends: stats
Description: Calculates Fisher's exact and Blaker's exact tests with appropriate matching confidence intervals.
License: GPL-2
LazyLoad: yes
Packaged: 2009-07-22 10:54:19 UTC; faym
Repository: CRAN
Date/Publication: 2009-07-22 12:45:53

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Package xts updated to version 0.6-7 with previous version 0.6-6 dated 2009-06-14

Author: Jeffrey A. Ryan, Josh M. Ulrich
Title: Extensible Time Series
Description: Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.

Diff between xts versions 0.6-6 dated 2009-06-14 and 0.6-7 dated 2009-07-22

 DESCRIPTION                       |    8 
 NAMESPACE                         |    2 
 R/bind.R                          |   25 +
 R/coredata.xts.R                  |    2 
 R/endpoints.R                     |   49 +-
 R/fts.R                           |    2 
 R/origin.fix.R                    |    7 
 R/timeSeries.R                    |    3 
 R/xts.R                           |    4 
 R/xts.methods.R                   |   46 +-
 R/zoo.R                           |   18 -
 R/zzz.R                           |    4 
 inst/api_example/src/checkOrder.c |    6 
 inst/doc/xts.pdf                  |  652 +++++++++++++++++++-------------------
 man/subset.xts.Rd                 |only
 src/diff.c                        |    1 
 src/leadingNA.c                   |   15 
 src/merge.c                       |    2 
 src/rbind.c                       |    1 
 19 files changed, 460 insertions(+), 387 deletions(-)

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Package quantmod updated to version 0.3-11 with previous version 0.3-10 dated 2009-06-14

Author: Jeffrey A. Ryan
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial trading strategies

Diff between quantmod versions 0.3-10 dated 2009-06-14 and 0.3-11 dated 2009-07-22

 quantmod-0.3-10/quantmod/svn-commit.2.tmp |only
 quantmod-0.3-10/quantmod/svn-commit.tmp   |only
 quantmod-0.3-11/quantmod/DESCRIPTION      |   10 +++++-----
 quantmod-0.3-11/quantmod/R/chartSeries.R  |    7 ++-----
 4 files changed, 7 insertions(+), 10 deletions(-)

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Package forecasting updated to version 1.25 with previous version 1.24 dated 2009-04-15

Author: Rob J Hyndman
Bundle: forecasting
Contains: forecast fma Mcomp expsmooth

Diff between forecasting versions 1.24 dated 2009-04-15 and 1.25 dated 2009-07-22

 DESCRIPTION                  |    8 ++++----
 forecast/R/arima.R           |   19 +++++++++++++------
 forecast/R/ets.R             |    2 +-
 forecast/R/forecast.R        |   14 +++++++++-----
 forecast/R/newarima2.R       |    5 +++--
 forecast/man/auto.arima.Rd   |    4 +++-
 forecast/man/forecast.ets.Rd |    2 +-
 forecast/man/forecastplot.Rd |    7 +++++--
 forecast/man/numberdiffs.Rd  |   10 +++++++---
 9 files changed, 46 insertions(+), 25 deletions(-)

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New package SHARE with initial version 1.0.2
Package: SHARE
Type: Package
Title: SNP-Haplotype Adaptive REgression (SHARE)
Version: 1.0.2
Date: 2009-07-21
Author: James Y. Dai
Maintainer: Ting-Yuan Liu
Description: An adaptive algorithm to select the most informative set of SNPs for genetic association
License: GPL (>= 2)
LazyLoad: no
Depends: haplo.stats, MASS, methods
Collate: S4-class.R genoSet-class.R haploSet-class.R haplo-class.R share-class.R finalsubset.R cshare.R zzz.SHARE.R
Packaged: 2009-07-21 19:12:00 UTC; ting
Repository: CRAN
Date/Publication: 2009-07-22 04:54:36

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Package HWEBayes updated to version 1.1 with previous version 1.0 dated 2009-06-25

Author: Jon Wakefield
Title: Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing.
Description: Estimation and testing of HWE using Bayesian methods. Three models are currently considered: HWE, a model parameterized in terms of the allele frequencies and a single inbreeding coefficient f, and the saturated model. Testing is based on Bayes factors.

Diff between HWEBayes versions 1.0 dated 2009-06-25 and 1.1 dated 2009-07-22

 HWEBayes-1.0/HWEBayes/inst/doc/HWEBayes-WorkedExample.pdf |only
 HWEBayes-1.1/HWEBayes/DESCRIPTION                         |   10 +++++-----
 HWEBayes-1.1/HWEBayes/R/HWEImportSamp.R                   |    3 ++-
 HWEBayes-1.1/HWEBayes/R/HWEmodelsMLE.R                    |    3 ++-
 HWEBayes-1.1/HWEBayes/R/SinglefReject.R                   |    3 ++-
 HWEBayes-1.1/HWEBayes/inst/doc/HWEBayes-Guide.pdf         |only
 6 files changed, 11 insertions(+), 8 deletions(-)

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