Author: Jonathan P. Weeks
Diff between plink versions 1.1-4 dated 2009-06-19 and 1.1-5 dated 2009-07-26
Title: IRT Separate Calibration Linking Methods
Description: This package uses item response theory methods to compute
linking constants and conduct chain linking of unidimensional
or multidimensional tests for multiple groups under a common
item design. The unidimensional methods include the Mean/Mean,
Mean/Sigma, Haebara, and Stocking-Lord methods for dichotomous
(1PL, 2PL and 3PL) and/or polytomous (graded response, partial
credit/generalized partial credit, nominal, and multiple-choice
model) items. The multidimensional methods include the
Reckase-Martineau method and extensions of the Haebara and
Stocking-Lord method using a single dilation parameter,
multiple dilation parameters, or the Oshima, Davey, & Lee
approach for multidimensional extensions of all the
unidimensional dichotomous and polytomous item response models.
The package also includes functions for importing item and/or
ability parameters from common IRT software and ploting item
characteristic/category curves or surfaces, vector plots, and
comparison plots for examining parameter drift.
DESCRIPTION | 13
NAMESPACE | 4
R/classes.R | 262 ++++++++++-
R/drm.R | 87 +++
R/gpcm.R | 111 ++++
R/grm.R | 120 ++++-
R/irt.pars.R | 145 +++++-
R/link.R | 66 ++
R/mcm.R | 84 +++
R/mixed.R | 107 ++++
R/nrm.R | 82 +++
R/plink.R | 514 +++++++++++++++-------
R/plot.R | 1142 ++++++++++++++++++++++++++++++++++++++-----------
R/read.bilog.R | 475 +++++++++++++++++++-
R/sep.pars.R | 584 ++++++++++++++++++++-----
R/summary.R | 163 ++++++
R/weight.R | 67 ++
inst/CITATION | 4
inst/NEWS | 98 +++-
man/irt.prob-class.Rd | 3
man/link-class.Rd | 4
man/list.poly-class.Rd | 6
man/mixed-methods.Rd | 18
man/plink-methods.Rd | 119 +++--
man/plot.irt.prob.Rd | 41 +
man/read.bilog.Rd | 24 -
man/sep.pars-class.Rd | 2
27 files changed, 3600 insertions(+), 745 deletions(-)
Author: Paul Gilbert
Diff between dse versions 2008.10-1 dated 2008-10-19 and 2009.7-1 dated 2009-07-26
Bundle: dse
Contains: dse1 dse2
dse-2008.10-1/dse/dse1/Rplots.pdf |only
dse-2008.10-1/dse/dse1/Rplots1.pdf |only
dse-2008.10-1/dse/dse2/Rplots.pdf |only
dse-2009.7-1/dse/DESCRIPTION | 23 ++++++++++++-----------
dse-2009.7-1/dse/NEWS | 6 ++++++
dse-2009.7-1/dse/dse1/inst/doc/dse-guide.pdf |binary
dse-2009.7-1/dse/dse1/inst/doc/dse1.pdf |binary
dse-2009.7-1/dse/dse1/man/ARMA.Rd | 5 +++--
dse-2009.7-1/dse/dse1/man/SS.Rd | 7 ++++---
dse-2009.7-1/dse/dse1/man/TSdata.Rd | 15 ++++++++-------
dse-2009.7-1/dse/dse1/man/TSdata.object.Rd | 4 ++--
dse-2009.7-1/dse/dse1/man/TSestModel.Rd | 3 ++-
dse-2009.7-1/dse/dse1/man/TSmodel.Rd | 12 +++++++-----
dse-2009.7-1/dse/dse1/man/l.SS.Rd | 2 +-
dse-2009.7-1/dse/dse2/inst/doc/dse2.pdf |binary
dse-2009.7-1/dse/dse2/man/EstEval.Rd | 10 ++++++----
16 files changed, 51 insertions(+), 36 deletions(-)
Author: Ann Lee, Diana Luca, Bert Klei, Bernie Devlin, Kathryn Roeder
Title: Discovering Genetic Ancestry Using Spectral Graph Theory
Description: Discovering Genetic Ancestry Using Spectral Graph Theory
Diff between SpectralGEM versions 0.2.1 dated 2009-06-02 and 1.0 dated 2009-07-26
SpectralGEM-0.2.1/SpectralGEM/man/installGEMcore.Rd |only SpectralGEM-0.2.1/SpectralGEM/src/RcallOlinux.c |only SpectralGEM-0.2.1/SpectralGEM/src/Rcallexe.c |only SpectralGEM-1.0/SpectralGEM/DESCRIPTION | 8 - SpectralGEM-1.0/SpectralGEM/R/Spectral-GEM.R | 91 +++++-------------- SpectralGEM-1.0/SpectralGEM/man/InFile.Rd | 26 +++-- SpectralGEM-1.0/SpectralGEM/man/MMfile.Rd | 6 - SpectralGEM-1.0/SpectralGEM/man/SpectralGEM.Rd | 28 +++-- SpectralGEM-1.0/SpectralGEM/man/plotLam.Rd |only SpectralGEM-1.0/SpectralGEM/man/updateInputFile.Rd | 3 SpectralGEM-1.0/SpectralGEM/src/GEM_sub.f |only SpectralGEM-1.0/SpectralGEM/src/SpectralGEM_v2.2.f90 |only 12 files changed, 64 insertions(+), 98 deletions(-)
Author: Robert B. Gramacy
Diff between tgp versions 2.2-2 dated 2009-05-29 and 2.2-3 dated 2009-07-26
Title: Bayesian treed Gaussian process models
Description: Bayesian nonstationary, semiparametric nonlinear
regression and design by treed Gaussian processes with jumps to
the limiting linear model (LLM). Special cases also
implemented include Bayesian linear models, CART, treed linear
models, stationary separable and isotropic Gaussian processes.
Provides 1-d and 2-d plotting functions (with projection and
slice capabilities) and tree drawing, designed for
visualization of tgp-class output. Sensitivity analysis and
multi-resolution models are supported. Sequential experimental
design and adaptive sampling functions are also provided,
including ALM, ALC, and expected improvement. The latter
supports derivative-free optimization of noisy black-box
functions.
ChangeLog | 9 +++++++
DESCRIPTION | 6 ++--
R/btgp.R | 6 ++++
R/predict.tgp.R | 2 +
R/tgp.R | 4 ++-
R/tgp.default.params.R | 7 ++++-
R/tgp.postprocess.R | 6 +++-
man/btgp.Rd | 6 +++-
src/all_draws.c | 10 ++++++--
src/base.h | 4 +--
src/gp.cc | 11 ++++----
src/gp.h | 4 +--
src/matrix.c | 60 ++++++++++++++++++++++++++++++++++++++++---------
src/matrix.h | 9 ++++---
src/model.cc | 6 +++-
src/mstructs.cc | 8 +++++-
src/mstructs.h | 2 +
src/params.cc | 10 ++++----
src/predict.c | 21 +++++++++++++----
src/predict.h | 5 +---
src/predict_linear.c | 28 +++++++++++++++++-----
src/predict_linear.h | 6 ++--
src/rand_pdf.c | 5 ++--
src/tgp.cc | 25 ++++++++++++--------
src/tgp.h | 4 +--
src/tree.cc | 20 +++++++++-------
src/tree.h | 4 +--
tgp_2.2-2.tar.gz |only
28 files changed, 204 insertions(+), 84 deletions(-)
Author: Radhakrishnan Nagarajan
Diff between packdep versions 0.1 dated 2009-07-18 and 0.2 dated 2009-07-26
Title: Mapping dependencies among R packages
Description: packdep elucidates the dependencies between
user-contributed R packages and identifies key packages
according to social network analysis metrics.
Changelog |only
DESCRIPTION | 11 +++++------
man/centrality.Rd | 4 ++--
man/dependencies.Rd | 4 ++--
man/packdep-package.Rd | 10 +++++-----
man/plot.packdep.centrality.Rd | 2 +-
man/plot.packdep.dependencies.Rd | 2 +-
man/related.packages.Rd | 4 ++--
8 files changed, 18 insertions(+), 19 deletions(-)
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.9.1.2 dated 2009-07-18 and 2.9.1.3 dated 2009-07-26
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 8 ++++----
R/epicalc.R | 4 ++++
2 files changed, 8 insertions(+), 4 deletions(-)
Author: Markus Loecher, Sense Networks
Title: Overlays on Google map tiles in R
Description: This package serves two purposes: (i) Provide a
comfortable R interface to query the Google server for static
maps, and (ii) Use the map as a background image to overlay
plots within R. This requires proper coordinate scaling. NOTE:
To do anything but downloading static map tiles, RgoogleMaps
needs EITHER rgdal OR ReadImages OR rimage installed ! Such an
OR dependency is difficult to express in the Depends field, so
I moved those packages to suggested. rgdal is your package if
you prefer png file format and ReadImages or rimage if you
prefer jpg format. In the latter cases, you will also need the
libjpeg library installed.
Diff between RgoogleMaps versions 1.1.4 dated 2009-07-18 and 1.1.5 dated 2009-07-26
RgoogleMaps-1.1.4/RgoogleMaps/Read-and-delete-me |only RgoogleMaps-1.1.5/RgoogleMaps/DESCRIPTION | 24 ++++---- RgoogleMaps-1.1.5/RgoogleMaps/R/GetMap.R | 2 RgoogleMaps-1.1.5/RgoogleMaps/R/GetMap.bbox.R | 23 ++++--- RgoogleMaps-1.1.5/RgoogleMaps/R/MapBackground.R | 33 ++++++----- RgoogleMaps-1.1.5/RgoogleMaps/R/MaxZoom.R | 6 +- RgoogleMaps-1.1.5/RgoogleMaps/R/PlotOnStaticMap.R | 2 RgoogleMaps-1.1.5/RgoogleMaps/R/RGB2GRAY.R | 11 +++ RgoogleMaps-1.1.5/RgoogleMaps/R/SPGDF2matrix.R |only RgoogleMaps-1.1.5/RgoogleMaps/inst/doc/RgoogleMaps-intro.pdf |binary RgoogleMaps-1.1.5/RgoogleMaps/man/PlotOnStaticMap.Rd | 2 RgoogleMaps-1.1.5/RgoogleMaps/man/RgoogleMaps-package.Rd | 6 +- RgoogleMaps-1.1.5/RgoogleMaps/man/SPGDF2matrix.Rd |only 13 files changed, 66 insertions(+), 43 deletions(-)