Author: Søren Højsgaard
Diff between doBy versions 3.9 dated 2009-05-13 and 4.0.0 dated 2009-07-31
Title: Groupwise computations of summary statistics, general linear
contrasts and other utilities
Description: Facilities for groupwise computations of summary
statistics and other facilities for working with grouped data.
doBy-3.9/doBy/mknamespace |only
doBy-4.0.0/doBy/ChangeLog | 16
doBy-4.0.0/doBy/DESCRIPTION | 12
doBy-4.0.0/doBy/INDEX | 2
doBy-4.0.0/doBy/NAMESPACE | 28
doBy-4.0.0/doBy/R/HmiscStuff.R | 152 ++--
doBy-4.0.0/doBy/R/esticon.R | 9
doBy-4.0.0/doBy/R/esticoncoxph.R |only
doBy-4.0.0/doBy/R/splitBy.R | 248 +++----
doBy-4.0.0/doBy/R/which.maxn.R |only
doBy-4.0.0/doBy/inst/doc/doBy.Rnw | 16
doBy-4.0.0/doBy/inst/doc/doBy.pdf | 1287 +++++++++++++++++++-------------------
doBy-4.0.0/doBy/man/budworm.Rd | 3
doBy-4.0.0/doBy/man/esticon.Rd | 32
doBy-4.0.0/doBy/man/splitBy.Rd | 8
doBy-4.0.0/doBy/man/which.maxn.Rd |only
16 files changed, 970 insertions(+), 843 deletions(-)
Author: Matthias Kohl, Peter Ruckdeschel
Title: Object orientated implementation of probability models
Description: Object orientated implementation of probability models
based on packages 'distr' and 'distrEx'
Diff between distrMod versions 2.1 dated 2009-04-15 and 2.1.1 dated 2009-07-31
DESCRIPTION | 14 +++++++------- R/L2ParamFamily.R | 6 +++--- man/Estimate-class.Rd | 2 ++ man/InternalReturnClasses-class.Rd | 2 +- man/L2ParamFamily-class.Rd | 2 +- man/asSemivar-class.Rd | 12 ++++++++---- man/confint-methods.Rd | 2 +- man/distrModOptions.Rd | 2 +- man/internalClassUnions-class.Rd | 2 +- man/trafo-methods.Rd | 2 +- man/validParameter-methods.Rd | 2 +- 11 files changed, 27 insertions(+), 21 deletions(-)
Author: Matthias Kohl, Peter Ruckdeschel
Title: Implementation of random variables
Description: Implementation of random variables by means of S4 classes
and methods
Diff between RandVar versions 0.6.8 dated 2009-07-31 and 0.6.9 dated 2009-07-31
DESCRIPTION | 10 +++++----- inst/doc/RandVar.pdf |binary inst/doc/svn-multi.sty |only inst/doc/svnkw.sty |only 4 files changed, 5 insertions(+), 5 deletions(-)
Author: Thomas Scheike with contributions from Torben Martinussen and
Jeremy Silver
Title: timereg package for Flexible regression models for survival
data.
Description: Programs for Martinussen and Scheike (2006), `Dynamic
Regression Models for Survival Data', Springer Verlag. Plus
more recent developments. Additive survival model,
semiparmetric proportional odds model, cumulative residuals,
excess risk models and more. Flexible competing risks
regression including GOF-tests.
Diff between timereg versions 1.2-2 dated 2009-06-14 and 1.2-5 dated 2009-07-31
timereg-1.2-2/timereg/R/two-stage.r |only timereg-1.2-2/timereg/man/two.stage.Rd |only timereg-1.2-2/timereg/src/aalen-des.c |only timereg-1.2-2/timereg/src/two-stage.c |only timereg-1.2-5/timereg/DESCRIPTION | 8 - timereg-1.2-5/timereg/NAMESPACE | 8 - timereg-1.2-5/timereg/R/additive-compSs.r |only timereg-1.2-5/timereg/R/additive-lasso.r | 8 - timereg-1.2-5/timereg/R/plots.r | 3 timereg-1.2-5/timereg/R/pls.cv.r | 8 - timereg-1.2-5/timereg/R/two-stage-reg.r | 125 +++++++++++++++++++++------ timereg-1.2-5/timereg/man/dynreg.Rd | 4 timereg-1.2-5/timereg/man/internal-addreg.Rd | 1 timereg-1.2-5/timereg/man/surv-lars.Rd | 3 timereg-1.2-5/timereg/man/two.stage.reg.Rd | 28 +++--- timereg-1.2-5/timereg/src/aalen-test.c | 6 - timereg-1.2-5/timereg/src/aalen.c | 14 +-- timereg-1.2-5/timereg/src/additive-compSs.c |only timereg-1.2-5/timereg/src/breslow.c | 45 +-------- timereg-1.2-5/timereg/src/comprisk.c | 6 - timereg-1.2-5/timereg/src/comptest-cmprsk.c | 3 timereg-1.2-5/timereg/src/comptest.c | 8 - timereg-1.2-5/timereg/src/dynadd.c | 6 - timereg-1.2-5/timereg/src/matrix.h | 35 +++++++ timereg-1.2-5/timereg/src/smooth2.c | 2 timereg-1.2-5/timereg/src/timecox.c | 27 ----- 26 files changed, 202 insertions(+), 146 deletions(-)
Author: Stefano Maria Iacus
Title: Simulation and Inference for Stochastic Differential Equations
Description: Companion package to the book Simulation and Inference for
Stochastic Differential Equations With R Examples, ISBN
978-0-387-75838-1, Springer, NY.
Diff between sde versions 2.0.8 dated 2009-07-24 and 2.0.9 dated 2009-07-31
sde-2.0.8/sde/inst/doc/sde.errata.aux |only sde-2.0.8/sde/inst/doc/sde.errata.log |only sde-2.0.9/sde/DESCRIPTION | 10 +++++----- sde-2.0.9/sde/R/MOdist.R | 4 ++-- sde-2.0.9/sde/inst/doc/sde.errata.pdf |binary sde-2.0.9/sde/man/MOdist.Rd | 2 +- 6 files changed, 8 insertions(+), 8 deletions(-)
Author: L. Andries van der Ark
Diff between mokken versions 1.4 dated 2008-12-18 and 2.0 dated 2009-07-31
Title: Mokken Scale Analysis in R
Description: mokken contains functions for performing Mokken scale
analysis on test and questionnaire data. It includes an
automated item selection algorithm, and various checks of model
assumptions.
mokken-1.4/mokken/R/zzz.R |only
mokken-1.4/mokken/man/search.normal.Rd |only
mokken-2.0/mokken/CITATION |only
mokken-2.0/mokken/DESCRIPTION | 29 +++++++++++----------
mokken-2.0/mokken/NAMESPACE | 25 +++++++++++++++---
mokken-2.0/mokken/R/aisp.R |only
mokken-2.0/mokken/R/check.iio.R | 11 ++++---
mokken-2.0/mokken/R/search.extended.R |only
mokken-2.0/mokken/R/search.ga.R |only
mokken-2.0/mokken/R/search.normal.R | 28 +++++++++++---------
mokken-2.0/mokken/inst |only
mokken-2.0/mokken/man/aisp.Rd |only
mokken-2.0/mokken/man/check.iio.Rd | 4 --
mokken-2.0/mokken/man/check.monotonicity.Rd | 2 -
mokken-2.0/mokken/man/check.pmatrix.Rd | 2 -
mokken-2.0/mokken/man/check.reliability.Rd | 5 ---
mokken-2.0/mokken/man/check.restscore.Rd | 3 --
mokken-2.0/mokken/man/coefH.Rd | 3 --
mokken-2.0/mokken/man/coefZ.Rd | 2 -
mokken-2.0/mokken/man/mokken-package.Rd | 9 ++----
mokken-2.0/mokken/man/plot.monotonicity.class.Rd | 2 -
mokken-2.0/mokken/man/plot.pmatrix.class.Rd | 2 -
mokken-2.0/mokken/man/plot.restscore.class.Rd | 2 -
mokken-2.0/mokken/man/summary.monotonicity.cass.Rd | 5 ---
mokken-2.0/mokken/man/summary.pmatrix.class.Rd | 8 -----
mokken-2.0/mokken/man/summary.restscore.class.Rd | 4 --
mokken-2.0/mokken/src |only
27 files changed, 64 insertions(+), 82 deletions(-)
Author: Wolfgang Viechtbauer
Diff between metafor versions 0.5-0 dated 2009-06-05 and 0.5-3 dated 2009-07-31
Title: Meta-Analysis Package for R
Description: The metafor package consists of a collection of functions
for conducting meta-analyses in R. Fixed- and random-effects
models (with and without moderators) can be fitted via the
general linear (mixed-effects) model. For 2x2 table data, the
Mantel-Haenszel and Peto's method are also implemented.
DESCRIPTION | 10 ++--
NEWS | 21 +++++++++
R/metafor.R | 105 ++++++++++++++++++++++++++++-------------------
man/escalc.Rd | 5 +-
man/forest.default.Rd | 2
man/forest.rma.Rd | 13 +++--
man/plot.rma.uni.Rd | 3 +
man/plot.rma.uni.infl.Rd | 10 ++--
8 files changed, 110 insertions(+), 59 deletions(-)
Author: Felix Kaminsky
Diff between estout versions 0.4-1 dated 2009-05-28 and 0.5-1 dated 2009-07-31
Title: Estimates Output
Description: The function collection stores the estimates of several
models and formats it to a table of the form estimate starred
and std.err. below. The default output is LaTeX but output to
CSV for later editing in a spreadsheet tool is possible as
well. It works for linear models (lm) and panel models from the
"plm"-package (plm).
DESCRIPTION | 15 +++---
R/eststo.R | 12 ++++
R/esttab.R | 145 +++++++++++++++++++++++++++++++++++++++++-----------------
man/esttab.Rd | 6 +-
4 files changed, 126 insertions(+), 52 deletions(-)
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.9.1.4 dated 2009-07-30 and 2.9.1.5 dated 2009-07-31
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 8 ++++----
R/epicalc.R | 43 +++++++++++++++++++++++--------------------
man/roc.rd | 28 ++++++++++++++++++++++++++++
man/tableStack.rd | 12 +++++++++++-
4 files changed, 66 insertions(+), 25 deletions(-)
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Estimation and Testing classes based on package distr
Description: Evaluation (S4-)classes based on package distr for
evaluating procedures (estimators/tests) at data/simulation in
a unified way.
Diff between distrTEst versions 2.1 dated 2009-04-15 and 2.1.1 dated 2009-07-31
DESCRIPTION | 8 ++++---- man/Evaluation-class.Rd | 3 ++- 2 files changed, 6 insertions(+), 5 deletions(-)
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Simulation classes based on package distr
Description: Simulation (S4-)classes based on package distr
Diff between distrSim versions 2.1 dated 2009-04-15 and 2.1.1 dated 2009-07-31
DESCRIPTION | 8 ++++---- man/summary-methods.Rd | 36 ++++++++++++++++++++---------------- 2 files changed, 24 insertions(+), 20 deletions(-)
Author: Peter Ruckdeschel
Title: Utilities for Sweave together with TeX listings package
Description: provides utilities for defining R / Rd as
Tex-package-listings "language" and including R / Rd source
file (sniplets) copied from R-forge in its most recent version
(or another url) thereby avoiding inconsistencies between
vignette and documented source code
Diff between SweaveListingUtils versions 0.3 dated 2009-07-02 and 0.3.3 dated 2009-07-31
DESCRIPTION | 12 +- NAMESPACE | 6 - R/SweaveListingOptions.R | 22 +++- R/SweaveListingUtils.R | 162 ++++++++++++++++++++++++--------- R/keywordsStyle.R | 121 +++++++++++++++++++----- inst/NEWS | 14 ++ inst/doc/ExampleSweaveListingUtils.Rnw | 77 +++++++++++---- inst/doc/ExampleSweaveListingUtils.pdf |binary inst/doc/exam00.tex |only inst/doc/preamble.tex | 10 +- inst/doc/preamble2.tex |only inst/doc/preambleExp.tex | 107 +++++++++++++-------- inst/try |only man/SweaveListingOptions.Rd | 45 ++++++++- man/SweaveListingPreparations.Rd | 30 ++++-- man/isBaseOrRecommended.Rd |only man/lstinputSourceFromRForge.Rd | 4 man/lstset.Rd | 35 +++++-- man/setBaseOrRecommended.Rd |only man/taglist.Rd | 11 +- 20 files changed, 485 insertions(+), 171 deletions(-)
More information about SweaveListingUtils at CRAN
Permanent link
Author: Matthias Kohl, Peter Ruckdeschel
Title: Implementation of random variables
Description: Implementation of random variables by means of S4 classes
and methods
Diff between RandVar versions 0.6.7 dated 2009-02-25 and 0.6.8 dated 2009-07-31
DESCRIPTION | 32 +++++++++++++++++++------------- R/util.R | 5 ++++- inst/doc/RandVar.Rnw | 34 +++++++++++++++++++++++++++++++++- inst/doc/RandVar.pdf |binary man/0RandVar-package.Rd | 4 ++-- man/EuclRandVarList-class.Rd | 4 ++-- man/EuclRandVariable-class.Rd | 2 +- 7 files changed, 61 insertions(+), 20 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.95 dated 2009-07-18 and 0.96 dated 2009-07-31
DESCRIPTION | 12 +- R/FrF2.R | 19 ++- inst/NEWS | 12 ++ man/FrF2.Rd | 5 tests/FrF2test.Rout.save | 274 +++++++++++++++++++++++++++-------------------- tests/pbtest.Rout.save | 15 ++ 6 files changed, 209 insertions(+), 128 deletions(-)
Author: Øivind Skare
Diff between FEST versions 0.04 dated 2009-07-18 and 0.05 dated 2009-07-31
Title: Identification of Family Relations using linked markers
Description: Identification of Family Relations using linked markers.
DESCRIPTION | 8 ++++----
inst/CITATION | 26 ++++++++++++--------------
inst/doc |only
3 files changed, 16 insertions(+), 18 deletions(-)
Author: Ulrike Groemping
Title: Full factorials, orthogonal arrays and base utilities for DoE
packages
Description: This package creates full factorial experimental designs
and designs based on orthogonal arrays for (industrial)
experiments. Additionally, it provides some utility functions
used also by other DoE packages.
Diff between DoE.base versions 0.4-1 dated 2009-07-18 and 0.5 dated 2009-07-31
DESCRIPTION | 12 + NAMESPACE | 9 + R/DesignAccessors.r | 289 +++++++++++++++++++++++++++++++++++++++++++-- R/add.response.R |only R/cross.design.R |only R/export.design.R | 30 +++- R/fac.design.R | 8 - R/interleave.R |only R/oa.design.R | 19 ++ R/param.design.R |only R/paramtowide.R |only R/printandsummary.design.R |only R/reptolong.R |only R/reptowide.R |only inst/NEWS | 43 ++++++ man/add.response.Rd |only man/class-design.Rd | 160 +++++++++++++++++++++--- man/contr.FrF2.Rd | 15 +- man/cross.design.Rd |only man/export.design.Rd | 16 +- man/fac.design.Rd | 10 + man/oa.design.Rd | 5 man/param.design.Rd |only man/represhape.Rd |only tests |only 25 files changed, 550 insertions(+), 66 deletions(-)