Author: Antonio Gasparrini and Ben Armstrong
Title: Distributed Lag Non-linear Models
Description: The package dlnm contains functions to specify basis and
cross-basis matrices in order to run distributed lag models and
their non-linear extension, then to predict and graph the
results for a fitted model.
Diff between dlnm versions 0.4.0 dated 2009-08-04 and 0.4.1 dated 2009-08-04
DESCRIPTION | 8 inst/dlnmChangeLog | 2 inst/doc/Rplots.pdf | 4 inst/doc/dlnmOverview.Rnw | 2 inst/doc/dlnmOverview.pdf | 1224 ++++++++++++++++++++++------------------------ man/crossbasis.Rd | 4 6 files changed, 620 insertions(+), 624 deletions(-)
Author: Duncan Temple Lang (duncan@wald.ucdavis.edu)
Title: Tools for parsing and generating XML within R and S-Plus.
Description: This package provides many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. It also offers access to an
XPath "interpreter".
Diff between XML versions 2.5-3 dated 2009-06-25 and 2.6-0 dated 2009-08-04
Changes | 20 DESCRIPTION | 15 INSTALL | 2 NAMESPACE | 13 R/XMLClasses.R | 9 R/bitList.R |only R/htmlParse.R | 16 R/nodeAccessors.R | 17 R/readHTMLTable.R | 7 R/reflection.R |only R/saveXML.R | 15 R/toString.S | 3 R/xmlNodes.R | 6 R/xmlToDataFrame.R |only R/zzz.R | 1 configure | 5289 ++++++++++++++++++----------------------- inst/exampleData/size.xml |only inst/exampleData/xinclude/.svn |only man/XMLCodeFile-class.Rd | 3 man/XMLNode-class.Rd | 9 man/makeClassTemplate.Rd |only man/parseURI.Rd | 9 man/readHTMLTable.Rd | 3 man/saveXML.Rd | 1 man/xmlToDataFrame.Rd |only man/xmlToS4.Rd |only src/HTMLParse.c | 50 src/RUtils.c | 1 src/Utils.h | 2 src/XMLTree.c | 9 30 files changed, 2570 insertions(+), 2930 deletions(-)
Author: Andreas Ruckstuhl, Thomas Unternaehrer, Rene Locher
Title: Utilities of Institute of Data Analyses and Process Design
(www.idp.zhaw.ch)
Description: The IDPmisc package contains different high-level graphics
functions for displaying large datasets, displaying circular
data in a very flexible way, finding local maxima, brewing
color ramps, drawing nice arrows, zooming 2D-plots, creating
figures with differently colored margin and plot region. In
addition, the package contains auxiliary functions for data
manipulation like omitting observations with irregular values
or selecting data by logical vectors, which include NAs. Other
functions are especially useful in spectroscopy and analyses of
environmental data: robust baseline fitting, finding peaks in
spectra.
Diff between IDPmisc versions 1.1.02 dated 2009-08-04 and 1.1.03 dated 2009-08-04
IDPmisc-1.1.02/IDPmisc/R/drawleg.R |only IDPmisc-1.1.03/IDPmisc/ChangeLog | 10 ++++++ IDPmisc-1.1.03/IDPmisc/DESCRIPTION | 6 ++-- IDPmisc-1.1.03/IDPmisc/R/draw.leg.R | 39 +++++++++++++++++++++----- IDPmisc-1.1.03/IDPmisc/R/itermplot.R | 10 +++--- IDPmisc-1.1.03/IDPmisc/R/plot.onepage.R | 28 +++++++++--------- IDPmisc-1.1.03/IDPmisc/R/plot.rose.R | 2 - IDPmisc-1.1.03/IDPmisc/man/IDPmisc-package.Rd | 4 +- IDPmisc-1.1.03/IDPmisc/man/Image.Rd | 18 ++++++------ IDPmisc-1.1.03/IDPmisc/man/iplot.Rd | 14 ++++----- IDPmisc-1.1.03/IDPmisc/man/itermplot.Rd | 30 ++++++++++---------- IDPmisc-1.1.03/IDPmisc/man/peaks.Rd | 4 +- IDPmisc-1.1.03/IDPmisc/man/rfbaseline.Rd | 22 +++++++------- IDPmisc-1.1.03/IDPmisc/man/zoom.Rd | 2 - 14 files changed, 111 insertions(+), 78 deletions(-)
Author: Frank E Harrell Jr
Diff between Hmisc versions 3.6-0 dated 2009-04-29 and 3.6-1 dated 2009-08-04
Title: Harrell Miscellaneous
Description: The Hmisc library contains many functions useful for data
analysis, high-level graphics, utility operations, functions
for computing sample size and power, importing datasets,
imputing missing values, advanced table making, variable
clustering, character string manipulation, conversion of S
objects to LaTeX code, and recoding variables. Please submit
bug reports to 'http://biostat.mc.vanderbilt.edu/trac/Hmisc'.
DESCRIPTION | 8 ++++----
R/xtfrm.labelled.s |only
man/escapeRegex.Rd | 2 +-
man/latex.Rd | 26 +++++++++++++-------------
man/ps.slide.Rd | 6 +++---
man/stata.get.Rd | 2 +-
man/xtfrm.labelled.Rd |only
7 files changed, 22 insertions(+), 22 deletions(-)
Author: NCAR - Research Application Program
Title: Forecast verification utilities.
Description: This package contains utilities for verification of
discrete,continuous, probabilistic forecasts and forecast
expressed as parametric distributions.
Diff between verification versions 1.29 dated 2009-01-04 and 1.30 dated 2009-08-04
ChangeLog | 10 ++++++++++ DESCRIPTION | 28 ++++++++++++++++------------ R/attribute.default.R | 8 ++++---- R/attribute.prob.bin.R | 3 ++- R/brier.r | 30 ++++++++++++++++++++++++++---- R/crpsDecomposition.r |only R/crpsFromAlphaBeta.R |only R/fss.R |only R/performance.diagram.R |only R/rcrv.r |only R/roc.plot.default.r | 3 ++- R/table.stats.R | 16 +++++++++++++--- R/table.stats.boot.R |only inst/doc/verification.pdf |binary man/attribute.Rd | 5 +++-- man/crpsDecompostion.Rd |only man/fss.Rd |only man/lines.verify.Rd | 4 ---- man/multi.cont.Rd | 6 ++++-- man/performance.diagram.Rd |only man/rcrv.Rd |only man/roc.plot.Rd | 4 ++-- man/table.stats.Rd |only man/table.stats.boot.Rd |only man/verify-internal.Rd | 5 ++--- 25 files changed, 84 insertions(+), 38 deletions(-)
Author: David Meyer and Kurt Hornik (with contributions by Christian
Buchta)
Title: Sets, Generalized Sets, and Customizable Sets
Description: Data structures and basic operations for ordinary sets,
generalizations such as fuzzy sets, multisets, and fuzzy
multisets, and customizable sets.
Diff between sets versions 0.7 dated 2009-05-24 and 1.0 dated 2009-08-04
sets-0.7/sets/paper |only sets-1.0/sets/DESCRIPTION | 11 sets-1.0/sets/NAMESPACE | 6 sets-1.0/sets/R/extractors.R | 72 - sets-1.0/sets/R/fuzzyfuns.R | 40 sets-1.0/sets/R/set.R | 5 sets-1.0/sets/R/union.R | 10 sets-1.0/sets/inst/CITATION |only sets-1.0/sets/inst/doc/sets.Rnw | 1288 +++++++++++++++++++--------- sets-1.0/sets/inst/doc/sets.bib |only sets-1.0/sets/inst/doc/sets.pdf |binary sets-1.0/sets/man/canonicalizeSetMapping.Rd | 2 sets-1.0/sets/man/cset.Rd | 11 sets-1.0/sets/man/fuzzy.Rd | 5 sets-1.0/sets/man/fuzzydocs.Rd | 4 sets-1.0/sets/man/fuzzyfuns.Rd | 33 sets-1.0/sets/man/fuzzyinference.Rd | 2 sets-1.0/sets/man/gset.Rd | 20 sets-1.0/sets/man/outer.Rd | 2 sets-1.0/sets/man/plot.Rd | 2 sets-1.0/sets/man/set.Rd | 8 21 files changed, 1030 insertions(+), 491 deletions(-)
Author: Daniel P Gaile
Diff between sendplot versions 3.7.0 dated 2009-04-04 and 3.8.0 dated 2009-08-04
Title: Tool for sending interactive plots with tool-tip content.
Description: A tool for visualizing data
DESCRIPTION | 8 ++++----
NAMESPACE |only
inst/doc/sendplot.Rnw |only
inst/doc/sendplot.dvi |only
inst/doc/sendplot.pdf |binary
man/makeSplot.Rd | 4 ++--
6 files changed, 6 insertions(+), 6 deletions(-)
Author: Roger Koenker
Diff between quantreg versions 4.36 dated 2009-07-18 and 4.38 dated 2009-08-04
Title: Quantile Regression
Description: Quantile regression and related methods.
DESCRIPTION | 8 ++++----
R/crq.R | 4 ++--
R/quantreg.R | 15 ++++++++-------
R/rqss.R | 18 ++++++++++++------
inst/ChangeLog | 16 ++++++++++++++++
inst/doc/Rplots.pdf | 4 ++--
inst/doc/rq.pdf |binary
man/nlrq.Rd | 2 +-
man/rqss.object.Rd | 1 +
9 files changed, 46 insertions(+), 22 deletions(-)
Author: Vahid PARTOVI NIA, Anthony Davison, and Arpit Chaudhary
Title: Convert labels or tables to a dendrogram
Description: The package offers a dendrogram representation of series
of labels, this is specially needed in Markov chain Monte Carlo
clustering. If you have a dendrogram in your mind you can
easily put series of meaningful labels in a matrix and heights
in a vector, then convert them to a dendrogram abject.
Diff between labeltodendro versions 1.0.0 dated 2009-02-25 and 1.1 dated 2009-08-04
DESCRIPTION | 23 +++++++++++++++-------- man/tabletodendro.Rd | 2 +- 2 files changed, 16 insertions(+), 9 deletions(-)
Author: Antonio Gasparrini and Ben Armstrong
Title: Distributed Lag Non-linear Models
Description: The package dlnm contains functions to specify basis and
cross-basis matrices in order to run distributed lag models and
their non-linear extension, then to predict and graph the
results for a fitted model.
Diff between dlnm versions 0.3.0 dated 2009-07-30 and 0.4.0 dated 2009-08-04
DESCRIPTION | 8 R/crossbasis.R | 17 R/crossplot.R | 4 R/crosspred.R | 11 R/mkbasis.R | 152 R/mklagbasis.R | 25 R/summary.crossbasis.R | 8 inst/CITATION | 2 inst/dlnmChangeLog | 74 inst/doc/Rplots.pdf |31201 ++++++++++++++++++++-------------------- inst/doc/biblio.bib | 823 - inst/doc/dlnmOverview.Rnw | 156 inst/doc/dlnmOverview.pdf |35729 +++++++++++++++++++++++----------------------- man/crossbasis.Rd | 38 man/crossplot.Rd | 6 man/crosspred.Rd | 15 man/dlnm-internal.Rd | 42 17 files changed, 34908 insertions(+), 33403 deletions(-)
Author: Nema Dean
Diff between clustvarsel versions 1.2 dated 2009-03-11 and 1.3 dated 2009-08-04
Title: Variable Selection for Model-Based Clustering
Description: The selection method uses either a greedy search or
headlong search. The greedy search at each step either checks
all variables not currently included in the set of clustering
variables singly for inclusion into the set or checks all
variables in the set of clustering variables singly for
exclusion.The headlong search only checks until a variable is
included or excluded (i.e. does not necessarily check all
possible variables for inclusion/exclusion at each step) and
any variable with evidence of clustering below a certain level
at any stage is removed from consideration for the remainder of
the algorithm. Each variable's evidence for being useful to the
clustering given the currently selected clustering variables is
given by the difference between the BIC for the model with
clustering (allowed to vary over 2 to a maximum number of
groups and any of the different covariance parameterizations
allowed in mclust) using the set of clustering variables
including the variable being checked and the sum of BICs for
the model with clustering (allowed to vary over 2 to a maximum
number of groups and any of the different covariance
parameterizations allowed in mclust) using the set of
clustering variables without the variable being checked and the
model for the variable being checked being conditionally
independent of the clustering given the other clustering
variables (this is modeled as a regression of the variable
being checked on the other clustering variables).
DESCRIPTION | 37 ++++++++++++++++++---
R/clustvarsel.R | 4 +-
R/clvarselnosampgr.R | 40 ++++++++++++-----------
R/clvarselnosamphl.R | 62 +++++++++++++++++++-----------------
R/clvarselsampgr.R | 50 ++++++++++++++++++-----------
R/clvarselsamphl.R | 73 +++++++++++++++++++++++++++----------------
inst/doc/refs.bib | 15 ++++++++
inst/doc/varsel.vignette.Rnw | 31 +++++++++---------
inst/doc/varsel.vignette.pdf |binary
inst/doc/vignplot1.eps |only
man/clustvarsel.Rd | 10 ++---
man/clvarselnosampgr.Rd | 12 +++----
man/clvarselnosamphl.Rd | 12 +++----
man/clvarselsampgr.Rd | 10 ++---
man/clvarselsamphl.Rd | 10 ++---
15 files changed, 225 insertions(+), 141 deletions(-)
Author: Sanford Weisberg
Diff between alr3 versions 1.1.7 dated 2008-05-25 and 1.1.8 dated 2009-08-04
Title: Methods and data to accompany Applied Linear Regression 3rd
edition
Description: This library is a companion to the textbook S. Weisberg
(2005), "Applied Linear Regression," 3rd edition, Wiley. It
includes all the data sets discussed in the book (except one),
and several few functions that are tailored to the methods
discussed in the book. Ver. 1.0.3 corrects bugs in (1) weights
for POD models; (2) use of 'subset' arguments with boot.case.
Ver. 1.0.4 corrects a few bugs with overparameterized models.
Ver. 1.0.5 changes one default argument. Ver 1.0.6 replaces the
pure.error.anova function so it prints nicer and works with
interactions. Ver 1.0.7 fixes a bug in residual.plots and adds
an additional argument and adds a new function alrweb to access
the website for the book in a browser. Ver 1.0.8 fixed a bug in
delta.method for generalized linear models. Ver 1.0.9 fixes a
bug with Yeo Johnson transformations. Ver 1.1.0 drops the
conf.intervals function in favor of the confint function in
stat, includes several minor bug fixes, and makes the package
fully compatible with version 2.6.0 of R. 1.1.2 corrects a bug
introduced in boot.case. Version 1.1.7 adds a namespace. Ver
1.1.8 fixes more bugs.
DESCRIPTION | 41 ++++++++++++++++++++++++++---------------
R/alr3.R | 4 +++-
man/anscombe.Rd | 1 -
man/blowdown.Rd | 1 -
man/pod.Rd | 4 ++--
man/residual.plots.Rd | 4 ++--
6 files changed, 33 insertions(+), 22 deletions(-)
Author: Rene Locher
Title: Air Quality Data of Switzerland for one year in 30 min
Resolution
Description: Ozone, NOx (= Sum of Nitrogenmonoxide and
Nitrogendioxide), Nitrogenmonoxide, ambient temperature, dew
point, wind speed and wind direction at 3 sites around lake of
Lucerne in Central Switzerland in 30 min time resolution for
year 2004.
Diff between SwissAir versions 1.0.9 dated 2007-10-03 and 1.1.00 dated 2009-08-04
ChangeLog | 19 ++++++++++++------- DESCRIPTION | 32 +++++++++++++++++++------------- man/AirQual.Rd | 30 +++++++++++++++--------------- 3 files changed, 46 insertions(+), 35 deletions(-)
Author: Dirk Eddelbuettel with contributions by Simon Urbanek and David
Reiss
Title: Rcpp R/C++ interface package
Description: R/C++ interface classes and examples The Rcpp library maps
data types betweeen R and C++, and includes support for R types
real, integer, character, vector, matrix, Date, datetime (i.e.
POSIXct) at microsecond resolution, data frame, and function.
It also supports calling R functions from C++.
Diff between Rcpp versions 0.6.5 dated 2009-04-03 and 0.6.6 dated 2009-08-04
Rcpp-0.6.5/Rcpp/inst/doc/RcppAPI.Rnw |only Rcpp-0.6.5/Rcpp/inst/doc/RcppAPI.pdf |only Rcpp-0.6.5/Rcpp/inst/doc/latex/FreeSans.ttf |only Rcpp-0.6.6/Rcpp/DESCRIPTION | 8 Rcpp-0.6.6/Rcpp/inst/ChangeLog | 9 Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp.html | 40 Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp_44dbfa080dcf3c7ed95e7d0b067276b3_cgraph.map | 16 Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp_44dbfa080dcf3c7ed95e7d0b067276b3_cgraph.md5 | 2 Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp_44dbfa080dcf3c7ed95e7d0b067276b3_cgraph.png |binary Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp_4d13d94df70a9a51d67cc6546eb2454f_cgraph.md5 | 2 Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp_4d13d94df70a9a51d67cc6546eb2454f_cgraph.png |binary Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp__incl.md5 | 2 Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp__incl.png |binary Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp_ecc07b10373d7134c6be02aaa652fc19_cgraph.map | 2 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Author: Andreas Ruckstuhl, Thomas Unternaehrer, Rene Locher
Title: Utilities of Institute of Data Analyses and Process Design
(www.idp.zhaw.ch)
Description: The IDPmisc package contains different high-level graphics
functions for displaying large datasets, displaying circular
data in a very flexible way, finding local maxima, brewing
color ramps, drawing nice arrows, zooming 2D-plots, creating
figures with differently colored margin and plot region. In
addition, the package contains auxiliary functions for data
manipulation like omitting observations with irregular values
or selecting data by logical vectors, which include NAs. Other
functions are especially useful in spectroscopy and analyses of
environmental data: robust baseline fitting, finding peaks in
spectra.
Diff between IDPmisc versions 1.1.00 dated 2009-04-14 and 1.1.02 dated 2009-08-04
ChangeLog | 14 +++- DESCRIPTION | 11 +-- R/Arrows.R | 8 +- R/IDPcolorRamp.R | 19 +++--- R/Image.R | 16 ++--- R/NaRV.omit.R | 14 ++-- R/cart2clock.R | 6 - R/clock2cart.R | 5 - R/col2hsv.R | 6 - R/data.sheet.R | 8 +- R/drawleg.R |only R/general.control.R | 7 +- R/getXY.R | 5 - R/grid.control.R | 6 + R/griddat.R | 9 +- R/ilagplot.R | 16 ++--- R/ipairs.R | 30 +++++---- R/ipanel.smooth.R | 7 +- R/iplot.R | 18 ++--- R/iplotLegend.R | 8 +- R/iplotMain.R | 5 - R/itermplot.R | 9 +- R/ixyplot-Deprecated.R |only R/key.control.R | 5 - R/longts.plot-Defunct.R |only R/longtsPlot.R | 9 +- R/ok.R | 5 - R/peaks.R | 149 ++++++++++++++++++++++++------------------------ R/plot.page.R | 25 ++++---- R/poster.plot.R | 6 + R/rfbaselineScale.R | 20 +++--- R/rose.R | 2 R/rose.grob.R | 4 - R/segments.circle.R | 6 + R/showColors.R | 13 ++-- R/title.control.R | 6 + R/val.rose.R | 2 R/zoom.R | 9 +- man/Arrows.Rd | 12 +-- man/IDPcolorRamp.Rd | 3 man/IDPmisc-package.Rd | 4 - man/cart2clock.Rd | 2 man/clock2cart.Rd | 2 man/general.control.Rd | 17 ++--- 44 files changed, 285 insertions(+), 243 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.96 dated 2009-07-31 and 0.96-1 dated 2009-08-04
DESCRIPTION | 8 R/IAPlot.R | 1 R/print.catlg.R | 2 inst/NEWS | 7 man/FrF2-package.Rd | 2 tests/FrF2test.Rout.save | 1371 ++++++++++++------------ tests/pbtest.Rout.save | 2623 +++++++++++++++++++++++------------------------ 7 files changed, 2050 insertions(+), 1964 deletions(-)
Author: Kaspar Rufibach
Title: Generate LaTeX tables of descriptive statistics
Description: The functions in this package are especially helpful when
writing reports of data analysis using Sweave.
Diff between reporttools versions 1.0.3 dated 2009-04-22 and 1.0.4 dated 2009-08-04
CHANGES | 18 ++++++++- DESCRIPTION | 8 ++-- R/NAtoCategory.R | 2 - R/checkDateSuccession.R | 2 - R/disp.R | 17 ++++++-- R/displayCI.R | 7 ++- R/displayKbyC.R | 8 +++- R/eliminateNA.R | 2 - R/tableContinuous.R | 86 +++++++++++++++++++++++++------------------ R/tableDate.R | 37 ++++++++++++------ R/tableNominal.R | 35 ++++++++++++----- R/transformVarNames.R | 5 ++ R/varNamesToChar.R | 2 - inst |only man/disp.Rd | 14 ++++--- man/eliminateNA.Rd | 2 - man/reporttools-package.Rd | 7 ++- man/tableContinuous.Rd | 89 +++++++++++++++++++++++++-------------------- man/tableDate.Rd | 63 +++++++++++++++++++------------ man/tableNominal.Rd | 61 +++++++++++++++++++----------- man/transformVarNames.Rd | 6 +-- 21 files changed, 296 insertions(+), 175 deletions(-)