Wed, 05 Aug 2009

Package rpart updated to version 3.1-45 with previous version 3.1-44 dated 2009-05-24

Author: Terry M Therneau and Beth Atkinson . R port by Brian Ripley.
Title: Recursive Partitioning
Description: Recursive partitioning and regression trees

Diff between rpart versions 3.1-44 dated 2009-05-24 and 3.1-45 dated 2009-08-05

 ChangeLog         |    2 ++
 DESCRIPTION       |    8 ++++----
 man/path.rpart.Rd |   12 ++++++------
 man/snip.rpart.Rd |    2 +-
 tests/Examples    |only
 5 files changed, 13 insertions(+), 11 deletions(-)

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Package ks updated to version 1.6.6 with previous version 1.6.5 dated 2009-06-24

Author: Tarn Duong
Title: Kernel smoothing
Description: Kernel density estimators and kernel discriminant analysis for multivariate data

Diff between ks versions 1.6.5 dated 2009-06-24 and 1.6.6 dated 2009-08-05

 DESCRIPTION        |   10 +--
 NAMESPACE          |    2 
 R/deconv-kde.R     |only
 R/mise.R           |  169 +++++++++++++++++++++++++++++++++--------------------
 R/normal.R         |   81 ++++++++++++++++---------
 README             |   27 +++++---
 inst/doc/kde.pdf   |binary
 man/Hamise.mixt.Rd |    6 +
 8 files changed, 188 insertions(+), 107 deletions(-)

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Package boot updated to version 1.2-38 with previous version 1.2-37 dated 2009-06-16

Author: S original by Angelo Canty . R port by Brian Ripley .
Title: Bootstrap R (S-Plus) Functions (Canty)
Description: functions and datasets for bootstrapping from the book "Bootstrap Methods and Their Applications" by A. C. Davison and D. V. Hinkley (1997, CUP).

Diff between boot versions 1.2-37 dated 2009-06-16 and 1.2-38 dated 2009-08-05

 ChangeLog              |    4 ++++
 DESCRIPTION            |   10 +++++-----
 man/boot-practicals.Rd |    2 +-
 man/censboot.Rd        |    4 ++--
 man/linear.approx.Rd   |    2 +-
 man/nitrofen.Rd        |    2 +-
 tests                  |only
 7 files changed, 14 insertions(+), 10 deletions(-)

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Package VR updated to version 7.2-48 with previous version 7.2-47 dated 2009-05-12

Author: S original by Venables & Ripley. R port by Brian Ripley , following earlier work by Kurt Hornik and Albrecht Gebhardt.
Bundle: VR
Contains: MASS class nnet spatial

Diff between VR versions 7.2-47 dated 2009-05-12 and 7.2-48 dated 2009-08-05

 DESCRIPTION                 |    8 ++++----
 MASS/INDEX                  |    2 +-
 MASS/R/gamma.shape.R        |    6 +++---
 MASS/R/neg.bin.R            |    3 ++-
 MASS/R/negbin.R             |    1 +
 MASS/inst/NEWS              |    2 ++
 MASS/inst/scripts/ch08.R    |   22 +++++++++++-----------
 MASS/inst/scripts/ch11.R    |    9 ++++++---
 MASS/inst/scripts/ch13.R    |    2 +-
 MASS/man/Pima.tr.Rd         |    2 +-
 MASS/man/boxcox.Rd          |    2 +-
 MASS/man/contr.sdif.Rd      |   41 ++++++++++++++++++++++-------------------
 MASS/man/denumerate.Rd      |    2 +-
 MASS/man/fractions.Rd       |   22 +---------------------
 MASS/man/gamma.shape.glm.Rd |   15 +--------------
 MASS/man/genotype.Rd        |    2 +-
 MASS/man/newcomb.Rd         |    2 +-
 MASS/man/rational.Rd        |   17 ++---------------
 MASS/man/stepAIC.Rd         |    2 +-
 WHATS.NEW                   |    4 ++++
 nnet/R/multinom.R           |    4 +++-
 nnet/R/nnet.R               |    2 ++
 nnet/inst/NEWS              |    4 +++-
 23 files changed, 75 insertions(+), 101 deletions(-)

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Package gdata updated to version 2.6.0 with previous version 2.4.2 dated 2008-05-13

Author: Gregory R. Warnes and Gregor Gorjanc. Includes R source code and/or documentation contributed by Ben Bolker and Thomas Lumley.
Title: Various R programming tools for data manipulation
Description: Various R programming tools for data manipulation

Diff between gdata versions 2.4.2 dated 2008-05-13 and 2.6.0 dated 2009-08-05

 gdata-2.4.2/gdata/tests/doRUnit.R                         |only
 gdata-2.6.0/gdata/ChangeLog                               |  780 +++++++-------
 gdata-2.6.0/gdata/DESCRIPTION                             |   15 
 gdata-2.6.0/gdata/NAMESPACE                               |   53 
 gdata-2.6.0/gdata/NEWS                                    |   74 +
 gdata-2.6.0/gdata/R/bindData.R                            |only
 gdata-2.6.0/gdata/R/cbindX.R                              |only
 gdata-2.6.0/gdata/R/env.R                                 |    8 
 gdata-2.6.0/gdata/R/getDateTimeParts.R                    |only
 gdata-2.6.0/gdata/R/ll.R                                  |    8 
 gdata-2.6.0/gdata/R/nPairs.R                              |only
 gdata-2.6.0/gdata/R/object.size.R                         |only
 gdata-2.6.0/gdata/R/read.xls.R                            |  254 ++--
 gdata-2.6.0/gdata/R/runRUnitTests.R                       |only
 gdata-2.6.0/gdata/R/trimSum.R                             |only
 gdata-2.6.0/gdata/R/wideByFactor.R                        |only
 gdata-2.6.0/gdata/R/write.fwf.R                           |  164 ++
 gdata-2.6.0/gdata/inst/ChangeLog                          |  780 +++++++-------
 gdata-2.6.0/gdata/inst/NEWS                               |   74 +
 gdata-2.6.0/gdata/inst/doc/gregmisc.tex                   |    4 
 gdata-2.6.0/gdata/inst/doc/mapLevels.pdf                  |binary
 gdata-2.6.0/gdata/inst/doc/unknown.pdf                    |binary
 gdata-2.6.0/gdata/inst/perl/xls2tab.pl                    |only
 gdata-2.6.0/gdata/inst/unitTests/Makefile                 |   12 
 gdata-2.6.0/gdata/inst/unitTests/runRUnitTests.R          |only
 gdata-2.6.0/gdata/inst/unitTests/runit.bindData.R         |only
 gdata-2.6.0/gdata/inst/unitTests/runit.cbindX.R           |only
 gdata-2.6.0/gdata/inst/unitTests/runit.getDateTimeParts.R |only
 gdata-2.6.0/gdata/inst/unitTests/runit.nPairs.R           |only
 gdata-2.6.0/gdata/inst/unitTests/runit.trimSum.R          |only
 gdata-2.6.0/gdata/inst/unitTests/runit.wideByFactor.R     |only
 gdata-2.6.0/gdata/inst/unitTests/runit.write.fwf.R        |   64 -
 gdata-2.6.0/gdata/man/ConvertMedUnits.Rd                  |    2 
 gdata-2.6.0/gdata/man/aggregate.table.Rd                  |    4 
 gdata-2.6.0/gdata/man/bindData.Rd                         |only
 gdata-2.6.0/gdata/man/cbindX.Rd                           |only
 gdata-2.6.0/gdata/man/combine.Rd                          |    4 
 gdata-2.6.0/gdata/man/env.Rd                              |    2 
 gdata-2.6.0/gdata/man/frameApply.Rd                       |    4 
 gdata-2.6.0/gdata/man/gdata-package.Rd                    |    9 
 gdata-2.6.0/gdata/man/getDateTimePart.Rd                  |only
 gdata-2.6.0/gdata/man/humanReadable.Rd                    |only
 gdata-2.6.0/gdata/man/interleave.Rd                       |    4 
 gdata-2.6.0/gdata/man/ll.Rd                               |    7 
 gdata-2.6.0/gdata/man/matchcols.Rd                        |    2 
 gdata-2.6.0/gdata/man/nPairs.Rd                           |only
 gdata-2.6.0/gdata/man/nobs.Rd                             |    4 
 gdata-2.6.0/gdata/man/object.size.Rd                      |only
 gdata-2.6.0/gdata/man/read.xls.Rd                         |   51 
 gdata-2.6.0/gdata/man/rename.vars.Rd                      |    4 
 gdata-2.6.0/gdata/man/reorder.Rd                          |    4 
 gdata-2.6.0/gdata/man/resample.Rd                         |   41 
 gdata-2.6.0/gdata/man/runRUnitTests.Rd                    |only
 gdata-2.6.0/gdata/man/trim.Rd                             |    2 
 gdata-2.6.0/gdata/man/trimSum.Rd                          |only
 gdata-2.6.0/gdata/man/unmatrix.Rd                         |    2 
 gdata-2.6.0/gdata/man/upperTriangle.Rd                    |    4 
 gdata-2.6.0/gdata/man/wideByFactor.Rd                     |only
 gdata-2.6.0/gdata/man/write.fwf.Rd                        |  114 +-
 gdata-2.6.0/gdata/tests/tests.write.fwf.R                 |   40 
 gdata-2.6.0/gdata/tests/tests.write.fwf.Rout.save         |  290 ++---
 61 files changed, 1745 insertions(+), 1139 deletions(-)

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New package DRI with initial version 1.0
Package: DRI
Type: Package
Title: DR-Integrator
Version: 1.0
Date: 2009-07-30
Author: Keyan Salari, Robert Tibshirani, Jonathan R. Pollack
Maintainer: Keyan Salari
Description: Integrative analysis of DNA copy number and gene expression data described in Salari et al 2009
License: GPL (>= 2)
Depends: impute
Packaged: 2009-08-04 19:05:36 UTC; pollacklab
Repository: CRAN
Date/Publication: 2009-08-05 05:17:35

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