Author: Thomas Kiefer
Diff between fechner versions 1.0-0 dated 2009-02-16 and 1.0-1 dated 2009-08-10
Title: Fechnerian Scaling of Discrete Object Sets
Description: Functions and example datasets for Fechnerian scaling of
discrete object sets. It computes Fechnerian distances among
objects representing subjective dissimilarities, and other
related information. See package?fechner for an overview.
COPYING |only
COPYRIGHTS |only
DESCRIPTION | 35 +++---
NEWS |only
R/check.data.R | 18 +--
R/check.regular.R | 88 ++++++++--------
R/fechner.R | 218 ++++++++++++++++++++---------------------
R/plot.fechner.R | 22 ++--
R/shortest.paths.information.R | 2
R/summary.fechner.R | 20 +--
inst |only
man/check.data.Rd | 34 +++---
man/check.regular.Rd | 16 +--
man/fechner-package.Rd | 13 +-
man/fechner.Rd | 52 ++++-----
man/morse.Rd | 7 -
man/noRegMin.Rd | 9 -
man/plot.fechner.Rd | 37 +++---
man/print.fechner.Rd | 6 -
man/print.summary.fechner.Rd | 8 -
man/regMin.Rd | 7 -
man/summary.fechner.Rd | 39 +++----
man/wish.Rd | 7 -
23 files changed, 321 insertions(+), 317 deletions(-)
Author: Philippe Grosjean
Title: SciViews GUI API - Sweave functions
Description: Supporting functions for the GUI API (Sweave functions)
Diff between svSweave versions 0.9-0 dated 2009-06-28 and 0.9-1 dated 2009-08-10
DESCRIPTION | 10 ++++++---- NEWS | 5 ++++- R/cleanLyxRnw.R | 9 ++++----- man/cleanLyxRnw.Rd | 4 ++-- 4 files changed, 16 insertions(+), 12 deletions(-)
Author: Claus Dethlefsen, Soren Lundbye-Christensen and Anette Luther
Christensen
Title: State Space Models in R
Description: A glm-like formula language to define dynamic generalized
linear models (state space models). Includes functions for
Kalman filtering and smoothing. Estimation of variance matrices
can be perfomred using the EM algorithm in case of Gaussian
models. Read help(sspir) to get started.
Diff between sspir versions 0.2.3 dated 2007-04-19 and 0.2.7 dated 2009-08-10
CHANGES |only DESCRIPTION | 30 +++++++---- NAMESPACE | 6 +- R/EMalgo.R |only R/SS.R | 54 ++++++++++++++++++-- R/getFamily.R | 14 ++--- R/kfs.R | 148 +++++++++++++++++++++++++++++++++++++++++++++++++++---- R/simulation.R | 2 R/ssm.R | 5 + man/EMalgo.Rd |only man/SS.Rd | 14 ++--- man/kfs.Rd | 4 - man/kurit.Rd | 2 man/recursion.Rd | 2 14 files changed, 234 insertions(+), 47 deletions(-)
Author: Martin Maechler and many others.
Title: Utilities from Seminar fuer Statistik ETH Zurich
Description: Useful utilities ['goodies'] from Seminar fuer Statistik
ETH Zurich, many ported from S-plus times.
Diff between sfsmisc versions 1.0-7 dated 2009-01-11 and 1.0-8 dated 2009-08-10
ChangeLog | 17 +++++++++++++++++ DESCRIPTION | 12 +++++++----- R/unix/Sys.ps.R | 1 + inst/ChangeLog | 17 +++++++++++++++++ man/Duplicated.Rd | 2 +- man/uniqueL.Rd | 5 ++++- man/unix/Sys.cpuinfo.Rd | 6 +++++- 7 files changed, 52 insertions(+), 8 deletions(-)
Author: Kurt Hornik and David Meyer
Title: Data Structures and Algorithms for Relations
Description: Data structures and algorithms for k-ary relations with
arbitrary domains, featuring relational algebra, predicate
functions, and fitters for consensus relations.
Diff between relations versions 0.5-2 dated 2009-07-01 and 0.5-3 dated 2009-08-10
DESCRIPTION | 10 +++++----- NEWS | 4 ++++ R/dissimilarity.R | 5 ++++- R/fitters.R | 4 ++-- R/pclust.R | 10 +++++----- inst/NEWS | 4 ++++ inst/doc/relations.Rnw | 29 ++++++++++++++--------------- inst/doc/relations.pdf |binary man/algebra.Rd | 10 +++++----- man/choice.Rd | 2 +- man/consensus.Rd | 12 +++++++----- man/dissimilarity.Rd | 2 +- man/incidence.Rd | 6 +++--- man/pclust.Rd | 2 +- man/plot.Rd | 15 ++++++++------- man/relation.Rd | 5 +++-- man/scores.Rd | 4 ++-- 17 files changed, 69 insertions(+), 55 deletions(-)
Author: Original S code by Patrick J. Burns. Ported to R by Nick
Efthymiou. Adapted to new R releases by Claus Dethlefsen.
Title: Directed and undirected graphs
Description: Simple tools for constructing and manipulating objects of
class mathgraph from the book "S Poetry", available at
http://www.burns-stat.com/pages/spoetry.html
Diff between mathgraph versions 0.9-8 dated 2007-04-19 and 0.9-10 dated 2009-08-10
DESCRIPTION | 28 +++++++++++++++------------- LICENSE |only man/adjamat.Rd | 4 ++-- man/getpath.Rd | 4 ++-- man/incidmat.Rd | 4 ++-- man/mathgraph.Rd | 4 ++-- 6 files changed, 23 insertions(+), 21 deletions(-)
Author: Kurt Hornik, with contributions from Walter Boehm
Title: Cluster ensembles
Description: CLUster Ensembles
Diff between clue versions 0.3-27 dated 2009-02-19 and 0.3-28 dated 2009-08-10
clue-0.3-27/clue/man/agreement.Rd |only clue-0.3-27/clue/man/bag.Rd |only clue-0.3-27/clue/man/boot.Rd |only clue-0.3-27/clue/man/classes.Rd |only clue-0.3-27/clue/man/consensus.Rd |only clue-0.3-27/clue/man/dissimilarity.Rd |only clue-0.3-27/clue/man/ensemble.Rd |only clue-0.3-27/clue/man/fuzziness.Rd |only clue-0.3-27/clue/man/margin.Rd |only clue-0.3-27/clue/man/medoid.Rd |only clue-0.3-27/clue/man/membership.Rd |only clue-0.3-27/clue/man/object_names.Rd |only clue-0.3-27/clue/man/pam.Rd |only clue-0.3-27/clue/man/predict.Rd |only clue-0.3-27/clue/man/prototypes.Rd |only clue-0.3-27/clue/man/tabulate.Rd |only clue-0.3-27/clue/man/ultrametric.Rd |only clue-0.3-27/clue/man/validity.Rd |only clue-0.3-28/clue/DESCRIPTION | 10 - clue-0.3-28/clue/NAMESPACE | 1 clue-0.3-28/clue/R/dissimilarity.R | 43 ++++++ clue-0.3-28/clue/R/pclust.R | 38 +++-- clue-0.3-28/clue/R/registration.R | 3 clue-0.3-28/clue/inst/CITATION | 4 clue-0.3-28/clue/inst/doc/clue.Rnw | 4 clue-0.3-28/clue/inst/doc/clue.pdf |binary clue-0.3-28/clue/man/cl_agreement.Rd |only clue-0.3-28/clue/man/cl_bag.Rd |only clue-0.3-28/clue/man/cl_boot.Rd |only clue-0.3-28/clue/man/cl_classes.Rd |only clue-0.3-28/clue/man/cl_consensus.Rd |only clue-0.3-28/clue/man/cl_dissimilarity.Rd |only clue-0.3-28/clue/man/cl_ensemble.Rd |only clue-0.3-28/clue/man/cl_fuzziness.Rd |only clue-0.3-28/clue/man/cl_margin.Rd |only clue-0.3-28/clue/man/cl_medoid.Rd |only clue-0.3-28/clue/man/cl_membership.Rd |only clue-0.3-28/clue/man/cl_object_names.Rd |only clue-0.3-28/clue/man/cl_pam.Rd |only clue-0.3-28/clue/man/cl_pclust.Rd |only clue-0.3-28/clue/man/cl_predict.Rd |only clue-0.3-28/clue/man/cl_prototypes.Rd |only clue-0.3-28/clue/man/cl_tabulate.Rd |only clue-0.3-28/clue/man/cl_ultrametric.Rd |only clue-0.3-28/clue/man/cl_validity.Rd |only clue-0.3-28/clue/man/hierarchy.Rd | 2 clue-0.3-28/clue/man/l1_fit_ultrametric.Rd | 2 clue-0.3-28/clue/man/ls_fit_sum_of_ultrametrics.Rd | 2 clue-0.3-28/clue/man/ls_fit_ultrametric.Rd | 2 clue-0.3-28/clue/man/pclust.Rd | 145 +++++++++++---------- clue-0.3-28/clue/man/sumt.Rd | 4 51 files changed, 169 insertions(+), 91 deletions(-)
Author: Peter K Dunn
Diff between tweedie versions 1.6.8 dated 2009-07-18 and 2.0.0 dated 2009-08-10
Title: Tweedie exponential family models
Description: Maximum likelihood computations for Tweedie families.
CHANGE.log | 12
DESCRIPTION | 8
R/tweedie.R | 63 +-
man/tweedie-package.Rd | 5
man/tweedie.profile.Rd | 44 +
src/tweedie.f | 1100 ++++++++++++++++++++++++-------------------------
6 files changed, 642 insertions(+), 590 deletions(-)
Author: Mark Stevenson
Diff between epiR versions 0.9-18 dated 2009-06-25 and 0.9-19 dated 2009-08-10
Title: Functions for analysing epidemiological data
Description: A package for analysing epidemiological data. Contains
functions for directly and indirectly adjusting measures of
disease frequency, quantifying measures of association on the
basis of single or multiple strata of count data presented in a
contingency table, and computing confidence intervals around
incidence risk and incidence rate estimates. Miscellaneous
functions for use in meta-analysis, diagnostic test
interpretation, and sample size calculations.
DESCRIPTION | 8
R/epi.2by2.R | 474 +--
R/epi.conf.R | 131
R/epi.descriptives.R | 2
R/epi.detectsize.R | 40
R/epi.dsl.R | 75
R/epi.iv.R | 70
R/epi.mh.R | 314 +-
R/epi.prev.R | 60
R/epi.smd.R | 29
R/epi.studysize.R | 197 -
R/epi.tests.R | 267 +
doc/epiR.pdf | 6556 ++++++++++++++++++++++++------------------------
man/epi.2by2.Rd | 24
man/epi.conf.Rd | 12
man/epi.descriptives.Rd | 4
man/epi.detectsize.Rd | 13
man/epi.dsl.Rd | 10
man/epi.iv.Rd | 8
man/epi.mh.Rd | 16
man/epi.prev.Rd | 13
man/epi.smd.Rd | 10
man/epi.studysize.Rd | 82
man/epi.tests.Rd | 35
24 files changed, 4387 insertions(+), 4063 deletions(-)
Author: Tomoaki Nakatani
Diff between ccgarch versions 0.1.4-2 dated 2009-05-29 and 0.1.6 dated 2009-08-10
Title: Conditional Correlation GARCH models
Description: Functions for estimating and simulating the family of the
CC-GARCH models.
ccgarch-0.1.4-2/ccgarch/TODO |only
ccgarch-0.1.6/ccgarch/DESCRIPTION | 8 ++--
ccgarch-0.1.6/ccgarch/R/dcc_estimation.R | 24 +++++++------
ccgarch-0.1.6/ccgarch/R/loglik_dcc.R | 3 +
ccgarch-0.1.6/ccgarch/man/analytical_Hessian.Rd | 6 +--
ccgarch-0.1.6/ccgarch/man/analytical_grad.Rd | 4 +-
ccgarch-0.1.6/ccgarch/man/d2lv.Rd | 8 +---
ccgarch-0.1.6/ccgarch/man/dcc_est.Rd | 8 +---
ccgarch-0.1.6/ccgarch/man/dcc_estimation.Rd | 19 +++++------
ccgarch-0.1.6/ccgarch/man/dcc_estimation1.Rd | 14 +-------
ccgarch-0.1.6/ccgarch/man/dcc_estimation2.Rd | 8 +---
ccgarch-0.1.6/ccgarch/man/dcc_results.Rd | 7 +---
ccgarch-0.1.6/ccgarch/man/dcc_sim.Rd | 12 +++---
ccgarch-0.1.6/ccgarch/man/dlc.Rd | 10 ++---
ccgarch-0.1.6/ccgarch/man/dlv.Rd | 10 ++---
ccgarch-0.1.6/ccgarch/man/dlv_est.Rd | 6 +--
ccgarch-0.1.6/ccgarch/man/eccc_estimation.Rd | 8 ++--
ccgarch-0.1.6/ccgarch/man/eccc_sim.Rd | 14 ++++----
ccgarch-0.1.6/ccgarch/man/fourth.Rd | 6 +--
ccgarch-0.1.6/ccgarch/man/grad_dcc2.Rd | 4 +-
ccgarch-0.1.6/ccgarch/man/grad_full_likelihood.Rd | 8 ++--
ccgarch-0.1.6/ccgarch/man/jb_test.Rd | 6 +--
ccgarch-0.1.6/ccgarch/man/ljung_box_test.Rd | 4 +-
ccgarch-0.1.6/ccgarch/man/loglik_dcc.Rd | 12 +++---
ccgarch-0.1.6/ccgarch/man/loglik_dcc1.Rd | 6 +--
ccgarch-0.1.6/ccgarch/man/loglik_dcc2.Rd | 6 +--
ccgarch-0.1.6/ccgarch/man/loglik_eccc.Rd | 8 ++--
ccgarch-0.1.6/ccgarch/man/p_mat.Rd | 5 +-
ccgarch-0.1.6/ccgarch/man/rob_kr.Rd | 4 +-
ccgarch-0.1.6/ccgarch/man/rob_sk.Rd | 4 +-
ccgarch-0.1.6/ccgarch/man/stationarity.Rd | 5 +-
ccgarch-0.1.6/ccgarch/man/stcc_sim.Rd | 16 ++++-----
ccgarch-0.1.6/ccgarch/man/tr_func.Rd | 2 -
ccgarch-0.1.6/ccgarch/man/uni_vola.Rd | 4 +-
ccgarch-0.1.6/ccgarch/man/uni_vola_sim.Rd | 10 ++---
ccgarch-0.1.6/ccgarch/man/vdR.Rd | 8 ++--
ccgarch-0.1.6/ccgarch/man/vec_garch_derivative.Rd | 8 ++--
ccgarch-0.1.6/ccgarch/man/vector_garch.Rd | 4 +-
ccgarch-0.1.6/ccgarch/src/R_dcc_sim.c | 38 +++++++++-------------
ccgarch-0.1.6/ccgarch/src/R_eccc_sim.c | 29 +++++++---------
ccgarch-0.1.6/ccgarch/src/R_stcc_sim.c | 24 +++++--------
41 files changed, 181 insertions(+), 209 deletions(-)