Fri, 14 Aug 2009

New package sdef with initial version 1.0
Package: sdef
Type: Package
Title: Synthesizing List of Differentially Expressed Features
Version: 1.0
Date: 2009-08-14
Author: Marta Blangiardo, Alberto Cassese
Maintainer: Marta Blangiardo , Alberto Cassese
Description: The package performs two tests to evaluate if the experiments are associated and returns a list of interesting feautres common to all the experiments.
License: GPL-2
LazyLoad: yes
Packaged: 2009-08-14 12:34:53 UTC; albantonio
Repository: CRAN
Date/Publication: 2009-08-14 20:03:30

More information about sdef at CRAN
Permanent link

Package rgdal updated to version 0.6-12 with previous version 0.6-10 dated 2009-07-18

Author: Timothy H. Keitt , Roger Bivand , Edzer Pebesma , Barry Rowlingson
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data Abstraction Library (GDAL) (>= 1.3.1) and access to projection/transformation operations from the PROJ.4 library. The GDAL and PROJ.4 libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both GDAL raster and OGR vector map data can be imported into R, and GDAL raster data and OGR vector data exported. Use is made of classes defined in the sp package.

Diff between rgdal versions 0.6-10 dated 2009-07-18 and 0.6-12 dated 2009-08-14

 ChangeLog                        |   32 ++++++++++++++++
 DESCRIPTION                      |    8 ++--
 R/gdal.R                         |   20 ++++++----
 R/sgdf_gdal.R                    |    4 +-
 R/sp_gdal.R                      |    6 +--
 inst/ChangeLog                   |   32 ++++++++++++++++
 man/CRS-class.Rd                 |    5 +-
 man/GDALDataset-class.Rd         |    2 -
 man/GDALReadOnlyDataset-class.Rd |    3 +
 man/SpatialGDAL-class.Rd         |   16 ++++++++
 man/readGDAL.Rd                  |    5 +-
 man/spTransform-methods.Rd       |   23 +++++------
 man/writeOGR.Rd                  |    5 ++
 src/gdal-bindings.cpp            |   75 +++++++++++++++++++++++++++++++++++++--
 14 files changed, 197 insertions(+), 39 deletions(-)

More information about rgdal at CRAN
Permanent link

Package ramps updated to version 0.6-8 with previous version 0.6-7 dated 2008-11-26

Author: Brian J. Smith , Jun Yan , and Mary Kathryn Cowles
Title: Bayesian Geostatistical Modeling with RAMPS
Description: Bayesian geostatistical modeling of Gaussian processes using a reparameterized and marginalized posterior sampling (RAMPS) algorithm designed to lower autocorrelation in MCMC samples. Package performance is tuned for large spatial datasets.

Diff between ramps versions 0.6-7 dated 2008-11-26 and 0.6-8 dated 2009-08-14

 DESCRIPTION          |   23 ++--
 R/control.R          |  261 ++++++++++++++++++++++++++++-----------------------
 R/georamps.R         |   47 +++++----
 R/mpdensity.R        |    8 -
 R/simplex.R          |    4 
 man/georamps.Rd      |    8 -
 man/param.Rd         |    8 -
 man/ramps.control.Rd |    4 
 8 files changed, 210 insertions(+), 153 deletions(-)

More information about ramps at CRAN
Permanent link

Package exact2x2 updated to version 0.9-3.1 with previous version 0.9-1 dated 2009-07-22

Author: M.P. Fay
Title: Exact Conditional Tests and Confidence Intervals for 2x2 tables
Description: Calculates Fisher's exact and Blaker's exact tests with appropriate matching confidence intervals.

Diff between exact2x2 versions 0.9-1 dated 2009-07-22 and 0.9-3.1 dated 2009-08-14

 ChangeLog                      |only
 DESCRIPTION                    |    8 
 R/blaker.exact.R               |    2 
 R/exact2x2.R                   |   22 
 R/exact2x2CI.R                 |   51 
 R/exact2x2Pvals.R              |    6 
 R/fisher.exact.R               |    2 
 inst/doc/exact2x2.Rnw          |    2 
 inst/doc/exact2x2.pdf          |binary
 inst/doc/exact2x2.tex          |    2 
 inst/doc/fay2009MatchingCI.pdf | 4799 ++++++++++++++++++++++++-----------------
 man/exact2x2-internal.Rd       |    9 
 man/exact2x2.Rd                |    5 
 man/exact2x2Plot.Rd            |    2 
 14 files changed, 2907 insertions(+), 2003 deletions(-)

More information about exact2x2 at CRAN
Permanent link

New package SIS with initial version 0.1
Package: SIS
Version: 0.1
Date: 2009-08-10
Title: Sure Independent Screening
Author: Jianqing Fan, Yang Feng, Richard Samworth, Yichao Wu
Maintainer: Yang Feng
Depends: survival, R (>= 2.0)
Description: (Iterative) Sure Independent Screening for Generalized Linear Models and Cox's Proportional Hazard's Models
License: GPL-2
Packaged: 2009-08-13 15:45:41 UTC; yangfeng
Repository: CRAN
Date/Publication: 2009-08-14 20:24:07

More information about SIS at CRAN
Permanent link

New package Rmpfr with initial version 0.1-5
Package: Rmpfr
Type: Package
Title: R MPFR - Multiple Precision Floating-Point Reliable
Version: 0.1-5
Date: 2009-08-06
Author: Martin Maechler
Maintainer: Martin Maechler
Depends: methods, R (>= 2.8.0)
SystemRequirements: MPFR (MP Floating-Point Reliable Library, http://mpfr.org/) and GMP (GNU Multiple Precision library, http://gmplib.org/), see README
Description: The package aims at providing S4 classes and methods for arithmetic including transcendental ("special") functions for arbitrary precision floating point numbers. To this end, it interfaces to the LGPL'ed MPFR (Multiple Precision Floating-Point Reliable) Library which itself is based on the GMP (GNU Multiple Precision) Library.
License: GPL (>= 2)
Packaged: 2009-08-13 19:40:47 UTC; maechler
Repository: CRAN
Date/Publication: 2009-08-14 20:24:02

More information about Rmpfr at CRAN
Permanent link

Package RSQLite updated to version 0.7-2 with previous version 0.7-1 dated 2008-10-26

Author: David A. James
Title: SQLite interface for R
Description: Database Interface R driver for SQLite. This package embeds the SQLite database engine in R and provides an interface compliant with the DBI package. The source for the SQLite engine (version 3.6.4) is included.

Diff between RSQLite versions 0.7-1 dated 2008-10-26 and 0.7-2 dated 2009-08-14

 DESCRIPTION       |   14 ++++++++------
 NAMESPACE         |    1 +
 R/SQLiteSupport.R |   12 ++++++------
 inst/HACKING      |   14 ++++++++++++++
 inst/NEWS         |    7 +++++++
 5 files changed, 36 insertions(+), 12 deletions(-)

More information about RSQLite at CRAN
Permanent link

Package R.filesets updated to version 0.5.3 with previous version 0.5.2 dated 2009-06-09

Author: Henrik Bengtsson
Title: Easy handling of and access to files organized in structured directories
Description: A file set refers to a set of files located in one or more directories on the file system. This package provides classes and methods to locate, setup, subset, navigate and iterative suchs sets. The API is designed such that these classes can be subsetted to provide for instance a richer API for special file formats. Moreover, a specific name format is defined such that filenames and directories can be considered to have fullnames which consists of a name followed by comma-separated tags. This adds additional flexibility to identify file sets and individual files. NOTE: This package's API should be considered to been in an alpha stage. Its main purpose is currently to support the aroma.* packages, where it is one of the main core components; if you decide to build on top of this package, please contact the author first.

Diff between R.filesets versions 0.5.2 dated 2009-06-09 and 0.5.3 dated 2009-08-14

 DESCRIPTION            |   10 +++++-----
 R/GenericDataFileSet.R |    8 +++++++-
 inst/NEWS              |    5 +++++
 3 files changed, 17 insertions(+), 6 deletions(-)

More information about R.filesets at CRAN
Permanent link

Package dtw updated to version 1.14-1 with previous version 1.13-1 dated 2009-07-01

Author: Toni Giorgino ,
Title: Dynamic Time Warping algorithms
Description: Comprehensive implementation of Dynamic Time Warping algorithms in R. DTW finds the optimal (least cumulative distance) mapping between two time series. All common DTW variants are covered, including local and global constraints, arbitrary timeseries lenghts, distance definitions, MVM, etc. Package computes cumulative distance, warping functions, plots, normalizations, etc.

Diff between dtw versions 1.13-1 dated 2009-07-01 and 1.14-1 dated 2009-08-14

 dtw-1.13-1/dtw/inst/dtw.bib       |only
 dtw-1.14-1/dtw/DESCRIPTION        |    8 ++--
 dtw-1.14-1/dtw/inst/CITATION      |   64 +++++++++++++++++++-------------------
 dtw-1.14-1/dtw/inst/ChangeLog     |    6 +--
 dtw-1.14-1/dtw/inst/doc           |only
 dtw-1.14-1/dtw/man/dtw-package.Rd |    8 +++-
 dtw-1.14-1/dtw/man/dtw.Rd         |   18 ++++++++--
 dtw-1.14-1/dtw/man/mvm.Rd         |    4 ++
 dtw-1.14-1/dtw/man/stepPattern.Rd |   27 +++++++++-------
 9 files changed, 80 insertions(+), 55 deletions(-)

More information about dtw at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.