Author: Kim Nimon
Diff between yhat versions 1.0-0 dated 2009-07-18 and 1.0-1 dated 2009-08-20
Title: Interpreting Regression Effects
Description: The purpose of this package is to provide methods for
variance partitioning for linear models and canonical
correlation and methods for interpreting regression effects
using beta weights, standardized beta weights, structure
coefficients, and adjusted effect sizes.
DESCRIPTION | 23 +++++++++++++----------
R/canonVariate.R | 1 -
R/effect.size.R |only
R/regr.R |only
man/canonCommonality.Rd | 1 -
man/commonalityCoefficients.Rd | 1 -
man/effect.size.Rd |only
man/regr.Rd |only
man/yhat-package.Rd | 14 ++++++++++----
9 files changed, 23 insertions(+), 17 deletions(-)
Author: Ryan T. Moore
Diff between muRL versions 0.1-1 dated 2009-07-18 and 0.1-2 dated 2009-08-20
Title: Mailmerge using R, LaTeX, and the Web
Description: Provides mailmerge methods for reading spreadsheets of
addresses and other relevant information to create standardized
but customizable letters. Provides a method for mapping US ZIP
codes, including those of letter recipients. Provides a method
for parsing and processing html code from online job postings
of the American Political Science Association.
CHANGELOG | 16 +++++++++++++++-
DESCRIPTION | 18 +++++++++---------
R/apsahtml2csv.R | 4 +++-
R/getdesc.R |only
R/read.murl.R | 10 ++++++----
R/zip.plot.R | 10 +++++++---
data/zips.tab | 2 +-
demo/zip.plot.R | 4 +++-
inst/doc/murlejobs.pdf |binary
man/apsahtml2csv.Rd | 6 ++++--
man/murl-package.Rd | 10 +++++-----
man/read.murl.Rd | 19 +++++++++++++------
man/write.murl.Rd | 10 +++++++---
man/zip.plot.Rd | 15 +++++++++++----
man/zips.Rd | 12 ++++++++----
15 files changed, 92 insertions(+), 44 deletions(-)
Author: Patrick E. Meyer, Frederic Lafitte, Gianluca Bontempi
Title: Mutual Information Network Inference
Description: This package implements various algorithms for inferring
mutual information networks from data.
Diff between minet versions 1.6.0 dated 2009-05-11 and 2.0.0 dated 2009-08-20
minet-1.6.0/minet/R/aracne.net.R |only minet-1.6.0/minet/R/clr.net.R |only minet-1.6.0/minet/R/disc.R |only minet-1.6.0/minet/R/mr.net.R |only minet-1.6.0/minet/R/norm.R |only minet-1.6.0/minet/inst/doc/courbes.pdf |only minet-1.6.0/minet/inst/doc/graph.pdf |only minet-1.6.0/minet/man/aracne.net.Rd |only minet-1.6.0/minet/man/clr.net.Rd |only minet-1.6.0/minet/man/disc.Rd |only minet-1.6.0/minet/man/mr.net.Rd |only minet-1.6.0/minet/man/norm.Rd |only minet-1.6.0/minet/src/disc.cpp |only minet-1.6.0/minet/src/mim.cpp |only minet-1.6.0/minet/src/symmetrize.cpp |only minet-2.0.0/minet/CHANGES | 7 minet-2.0.0/minet/DESCRIPTION | 14 minet-2.0.0/minet/R/build.mim.R | 66 minet-2.0.0/minet/R/minet.R | 15 minet-2.0.0/minet/R/netinf.R |only minet-2.0.0/minet/R/validate.R | 27 minet-2.0.0/minet/data/syn.net.rda |binary minet-2.0.0/minet/demo/demo.R | 22 minet-2.0.0/minet/inst/doc/minet.Rnw | 161 - minet-2.0.0/minet/inst/doc/minet.pdf | 3774 ++++++++------------------------- minet-2.0.0/minet/man/aracne.Rd |only minet-2.0.0/minet/man/build.mim.Rd | 25 minet-2.0.0/minet/man/clr.Rd |only minet-2.0.0/minet/man/minet.Rd | 12 minet-2.0.0/minet/man/mrnet.Rd |only minet-2.0.0/minet/man/syn.data.Rd | 3 minet-2.0.0/minet/man/syn.net.Rd | 2 minet-2.0.0/minet/man/validate.Rd | 8 minet-2.0.0/minet/man/vis.res.Rd | 6 minet-2.0.0/minet/src/aracne.cpp | 22 minet-2.0.0/minet/src/clr.cpp | 33 minet-2.0.0/minet/src/minet.cpp | 9 minet-2.0.0/minet/src/minet.h | 20 minet-2.0.0/minet/src/mrnet.cpp | 76 minet-2.0.0/minet/src/symetrize.cpp |only minet-2.0.0/minet/src/validate.cpp | 31 41 files changed, 1211 insertions(+), 3122 deletions(-)
Author: Gregory R. Warnes and Gregor Gorjanc. Includes R source code
and/or documentation contributed by Ben Bolker and Thomas
Lumley.
Title: Various R programming tools for data manipulation
Description: Various R programming tools for data manipulation
Diff between gdata versions 2.6.0 dated 2009-08-05 and 2.6.1 dated 2009-08-20
ChangeLog | 33 ++++++++++++++++++++++++++++++++ DESCRIPTION | 8 +++---- NEWS | 8 +++++++ inst/ChangeLog | 33 ++++++++++++++++++++++++++++++++ inst/NEWS | 8 +++++++ inst/doc/mapLevels.pdf |binary inst/doc/unknown.pdf |binary inst/unitTests/report.html |only inst/unitTests/report.txt |only inst/unitTests/runit.bindData.Rout |only inst/unitTests/runit.getDateTimeParts.R | 8 ++----- man/cbindX.Rd | 4 +-- man/getDateTimePart.Rd | 14 ++++++------- man/mapLevels.Rd | 4 +-- man/nPairs.Rd | 2 - man/trim.Rd | 4 +-- man/trimSum.Rd | 4 +-- man/unknown.Rd | 10 ++++----- man/write.fwf.Rd | 24 +++++++++++------------ 19 files changed, 122 insertions(+), 42 deletions(-)
Author: Guido van Steen
Title: dataframes2xls writes data frames to xls files
Description: dataframes2xls writes data frames to xls files. It
supports multiple sheets and basic formatting.
Diff between dataframes2xls versions 0.4.2 dated 2008-07-20 and 0.4.3 dated 2009-08-20
DESCRIPTION | 17 - LICENSE | 2 R/write.xls.R | 24 - inst/python/afm/LICENSE | 2 inst/python/afm/_mathtext_data.py | 62 ++++- inst/python/afm/afm.py | 106 ++++---- inst/python/pyexcelerator/BIFFRecords.py | 292 +++++++++++++++++++++++- inst/python/pyexcelerator/Cell.py | 51 +++- inst/python/pyexcelerator/Column.py | 19 + inst/python/pyexcelerator/CompoundDoc.py | 10 inst/python/pyexcelerator/ExcelFormula.py | 39 ++- inst/python/pyexcelerator/ExcelFormulaLexer.py | 8 inst/python/pyexcelerator/ExcelFormulaParser.py | 2 inst/python/pyexcelerator/Formatting.py | 62 ++++- inst/python/pyexcelerator/Row.py | 44 ++- inst/python/pyexcelerator/Style.py | 10 inst/python/pyexcelerator/Utils.py | 5 inst/python/pyexcelerator/Workbook.py | 57 ++++ inst/python/pyexcelerator/Worksheet.py | 82 ++++++ inst/python/pyexcelerator/excel-formula.g | 2 20 files changed, 748 insertions(+), 148 deletions(-)
More information about dataframes2xls at CRAN
Permanent link
Author: Sanford Weisberg
Diff between alr3 versions 1.1.9 dated 2009-08-19 and 1.1.10 dated 2009-08-20
Title: Methods and data to accompany Applied Linear Regression 3rd
edition
Description: This library is a companion to the textbook S. Weisberg
(2005), "Applied Linear Regression," 3rd edition, Wiley. It
includes all the data sets discussed in the book (except one),
and several few functions that are tailored to the methods
discussed in the book. Ver. 1.0.3 corrects bugs in (1) weights
for POD models; (2) use of 'subset' arguments with boot.case.
Ver. 1.0.4 corrects a few bugs with overparameterized models.
Ver. 1.0.5 changes one default argument. Ver 1.0.6 replaces the
pure.error.anova function so it prints nicer and works with
interactions. Ver 1.0.7 fixes a bug in residual.plots and adds
an additional argument and adds a new function alrweb to access
the website for the book in a browser. Ver 1.0.8 fixed a bug in
delta.method for generalized linear models. Ver 1.0.9 fixes a
bug with Yeo Johnson transformations. Ver 1.1.0 drops the
conf.intervals function in favor of the confint function in
stat, includes several minor bug fixes, and makes the package
fully compatible with version 2.6.0 of R. 1.1.2 corrects a bug
introduced in boot.case. Version 1.1.7 adds a namespace. Ver
1.1.8 fixes more bugs. Ver. 1.1.9 updated the delta.method to
work with a user-supplied estimate of the variance matrix.
1.1.10 removed a conflict with another package.
DESCRIPTION | 9 +++++----
NAMESPACE | 1 -
R/deltaMethod.R | 5 -----
man/deltaMethod.Rd | 2 --
4 files changed, 5 insertions(+), 12 deletions(-)
Author: Charlotte Maia
Title: Random Time Variables
Description: An R package for conveniently representing and
manipulating realisations of random time variables.
Diff between rtv versions 0.2.2 dated 2009-03-23 and 0.3.0 dated 2009-08-20
DESCRIPTION | 11 +++++------ inst/doc/rtv.pdf |binary inst/doc/rtv.rnw | 15 ++++++++------- 3 files changed, 13 insertions(+), 13 deletions(-)
Author: Martin Elff
Title: Tools for Management of Survey Data, Graphics, Programming,
Statistics, and Simulation
Description: One of the aims of this package is to make life easier for
useRs who deal with survey data sets. It provides an
infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) SPSS and
Stata files. Further, it provides functionality to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates. Also some convenience tools for graphics,
programming, and simulation are provided.
Diff between memisc versions 0.95-19 dated 2009-06-02 and 0.95-21 dated 2009-08-20
DESCRIPTION | 13 +-- R/AllGenerics.R | 12 ++ R/contrasts.R | 2 inst/NEWS | 6 + inst/doc/anes48.pdf |binary man/contrasts.Rd | 9 +- man/mtable.Rd | 4 src/pspp-portableStream-for-R.c | 167 +++++++++++++++++++++------------------- 8 files changed, 122 insertions(+), 91 deletions(-)
Author: Yue Fan, Thomas Brendan Murphy, R. William G. Watson
Title: GUI tool for analyzing 2D DIGE data
Description: An easy to use Graphical User Interfact for spots
correlation analysis, score plot, classification, feature
selection and power analysis for 2D DIGE experiment data.
Diff between digeR versions 1.1 dated 2009-08-06 and 1.2 dated 2009-08-20
digeR-1.1/digeR/inst/Manual_for_digeR_v1.1.pdf |only digeR-1.1/digeR/inst/digeR.pdf |only digeR-1.2/digeR/DESCRIPTION | 6 +++--- digeR-1.2/digeR/inst/doc |only digeR-1.2/digeR/man/digeR-package.Rd | 3 ++- digeR-1.2/digeR/man/digeR.Rd | 1 - 6 files changed, 5 insertions(+), 5 deletions(-)
Author: Peter Gilbert, Ian McKeague, and Yanqing Sun
Title: Continuous mark-specific relative risks for two groups
Description: Estimation and testing of continuous mark-specific
relative risks in two groups as described in Gilbert, P.,
McKeague, I. and Sun, Y. (2008) The 2-sample problem for
failure rates depending on a continuous mark: an application to
vaccine efficacy. Biostatistics 9, 2, 263-276. This package
implements the methods presented in the paper for testing
mark-specific hazards ratios and for estimation of
mark-specific incidence ratios that are cumulative in time or
cumulative in both time and the continuous mark.
Diff between cmprskContin versions 1.0 dated 2009-06-18 and 1.1 dated 2009-08-20
DESCRIPTION | 11 ++++++----- man/cmprsk.Rd | 2 +- man/cmprskContin-package.Rd | 6 +++--- man/plotCmprsk.Rd | 2 +- man/summaryCmprsk.Rd | 2 +- 5 files changed, 12 insertions(+), 11 deletions(-)
Author: Dimitris Rizopoulos
Diff between JM versions 0.3-0 dated 2009-06-17 and 0.4-0 dated 2009-08-20
Title: Joint Modelling of Longitudinal and Survival Data
Description: Shared parameter models for the joint modelling of
longitudinal and time-to-event data.
JM-0.3-0/JM/R/predict.jointModel.R |only
JM-0.4-0/JM/DESCRIPTION | 8 +++---
JM-0.4-0/JM/NAMESPACE | 6 +++-
JM-0.4-0/JM/R/H.longAFTWB.R |only
JM-0.4-0/JM/R/H.longPC.R |only
JM-0.4-0/JM/R/H.longWB.R |only
JM-0.4-0/JM/R/LogLik.piecewiseGH.R | 2 -
JM-0.4-0/JM/R/LogLik.weibullAFTGH.R | 15 ++++++-----
JM-0.4-0/JM/R/LogLik.weibullGH.R | 15 ++++++-----
JM-0.4-0/JM/R/MI.fixed.times.R | 44 +++++++++++++++++++++++++----------
JM-0.4-0/JM/R/MI.random.times.R | 33 +++++++++++++++++++-------
JM-0.4-0/JM/R/S.b.R |only
JM-0.4-0/JM/R/Score.piecewiseGH.R | 2 -
JM-0.4-0/JM/R/Score.weibullAFTGH.R | 13 +++++-----
JM-0.4-0/JM/R/Score.weibullGH.R | 13 +++++-----
JM-0.4-0/JM/R/cd.R |only
JM-0.4-0/JM/R/fitted.jointModel.R | 15 ++++++++---
JM-0.4-0/JM/R/gr.survPC.R | 10 +++----
JM-0.4-0/JM/R/h.b.R |only
JM-0.4-0/JM/R/log.posterior.b.R |only
JM-0.4-0/JM/R/piecewisePHGH.fit.R | 11 ++++----
JM-0.4-0/JM/R/plot.jointModel.R | 2 -
JM-0.4-0/JM/R/plot.survfitJM.R |only
JM-0.4-0/JM/R/posterior.b.R | 10 +++----
JM-0.4-0/JM/R/print.survfitJM.R |only
JM-0.4-0/JM/R/residuals.jointModel.R | 12 +++++++--
JM-0.4-0/JM/R/survfitJM.R |only
JM-0.4-0/JM/R/weibullAFTGH.fit.R | 25 +++++++++++--------
JM-0.4-0/JM/R/weibullPHGH.fit.R | 28 +++++++++++-----------
JM-0.4-0/JM/data/aids.id.rda |binary
JM-0.4-0/JM/data/aids.rda |binary
JM-0.4-0/JM/data/pbc2.id.rda |binary
JM-0.4-0/JM/data/pbc2.rda |binary
JM-0.4-0/JM/data/prothro.rda |binary
JM-0.4-0/JM/data/prothros.rda |binary
JM-0.4-0/JM/inst/NEWS | 12 +++++++++
JM-0.4-0/JM/man/JM.Rd | 4 +--
JM-0.4-0/JM/man/fitted.Rd | 5 ++-
JM-0.4-0/JM/man/jointModel.Rd | 8 ++++--
JM-0.4-0/JM/man/plot-survfitJM.Rd |only
JM-0.4-0/JM/man/survfitJM.Rd |only
41 files changed, 186 insertions(+), 107 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.97-1 dated 2009-08-19 and 0.97-3 dated 2009-08-20
DESCRIPTION | 8 ++-- R/FrF2.R | 23 +++++++---- R/add.center.R | 3 + R/find.gen.R |only R/fold.design.R | 5 ++ R/utilpb.R | 13 ++++-- inst/NEWS | 20 ++++++++++ man/CatalogueAccessors.Rd | 2 - man/FrF2.Rd | 10 ++++- man/pb.Rd | 2 - man/utilitiesPB.Rd | 8 ++-- tests/FrF2test.R | 2 + tests/FrF2test.Rout.save | 71 ++++++++++++++++++++++++++++++++++--- tests/generators.from.designtest.R |only 14 files changed, 136 insertions(+), 31 deletions(-)
Author: David Ardia, Lennart F. Hoogerheide and Herman K. van Dijk
Title: Adaptive Mixture of Student-t distributions
Description: This package provides functions to perform the fitting of
an adaptive mixture of Student-t distributions to a target
density through its kernel function. The mixture approximation
can then be used as the importance density in importance
sampling or as the candidate density in the Metropolis-Hastings
algorithm to obtain quantities of interest for the target
density itself.
Diff between AdMit versions 1-01.02 dated 2009-05-11 and 1-01.03 dated 2009-08-20
AdMit-1-01.02/AdMit/XEmacs-21.4.20.lnk |only AdMit-1-01.02/AdMit/inst/doc/ArticleRnews.txt |only AdMit-1-01.03/AdMit/DESCRIPTION | 8 AdMit-1-01.03/AdMit/NEWS | 5 AdMit-1-01.03/AdMit/R/onload.R | 2 AdMit-1-01.03/AdMit/inst/CITATION | 23 - AdMit-1-01.03/AdMit/inst/doc/AdMit.pdf | 497 +++++++++++------------ AdMit-1-01.03/AdMit/inst/doc/ArticleJSS.txt | 2 AdMit-1-01.03/AdMit/inst/doc/ArticleRJournal.txt |only AdMit-1-01.03/AdMit/inst/doc/Rplots.pdf | 4 AdMit-1-01.03/AdMit/man/AdMit.Rd | 14 AdMit-1-01.03/AdMit/man/AdMitIS.Rd | 16 AdMit-1-01.03/AdMit/man/AdMitMH.Rd | 14 AdMit-1-01.03/AdMit/man/Mit.Rd | 14 14 files changed, 304 insertions(+), 295 deletions(-)