Author: Edgar Acuna
Diff between dprep versions 2.0 dated 2008-04-14 and 2.1 dated 2009-08-21
Title: Data preprocessing and visualization functions for
classification
Description: Functions for normalization, handling of missing values,
discretization, outlier detection, feature selection, and
visualization
dprep-2.0/dprep/Read-and-delete-me |only
dprep-2.1/dprep/DESCRIPTION | 34 +++++++++++++++++++---------------
dprep-2.1/dprep/R/assig.R | 2 +-
dprep-2.1/dprep/R/baysout.R | 9 ++++++---
dprep-2.1/dprep/R/ce.impute.R | 2 +-
dprep-2.1/dprep/R/ce.knn.imp.R | 2 +-
dprep-2.1/dprep/R/ce.mimp.R | 2 +-
dprep-2.1/dprep/R/chiMerge.R | 2 +-
dprep-2.1/dprep/R/circledraw.R | 2 +-
dprep-2.1/dprep/R/clean.R | 2 +-
dprep-2.1/dprep/R/closest.R | 2 +-
dprep-2.1/dprep/R/combinations.R | 2 +-
dprep-2.1/dprep/R/crossval.R | 2 +-
dprep-2.1/dprep/R/cv10knn2.R | 2 +-
dprep-2.1/dprep/R/cv10lda2.R | 2 +-
dprep-2.1/dprep/R/cv10log.R | 2 +-
dprep-2.1/dprep/R/cv10mlp.R | 2 +-
dprep-2.1/dprep/R/cv10rpart2.R | 2 +-
dprep-2.1/dprep/R/decscale.R | 2 +-
dprep-2.1/dprep/R/disc.1r.R | 2 +-
dprep-2.1/dprep/R/disc.ef.R | 2 +-
dprep-2.1/dprep/R/disc.ew.R | 2 +-
dprep-2.1/dprep/R/disc.mentr.R | 2 +-
dprep-2.1/dprep/R/disc2.R | 2 +-
dprep-2.1/dprep/R/discretevar.R | 2 +-
dprep-2.1/dprep/R/dist.to.knn.R | 2 +-
dprep-2.1/dprep/R/distan2.R | 2 +-
dprep-2.1/dprep/R/distancia.R | 2 +-
dprep-2.1/dprep/R/ec.knnimp.R | 2 +-
dprep-2.1/dprep/R/finco.R | 2 +-
dprep-2.1/dprep/R/imagmiss.R | 2 +-
dprep-2.1/dprep/R/inconsist.R | 2 +-
dprep-2.1/dprep/R/knneigh.vect.R | 2 +-
dprep-2.1/dprep/R/lofactor.R | 2 +-
dprep-2.1/dprep/R/lvf.R | 2 +-
dprep-2.1/dprep/R/mahaout.R | 4 ++--
dprep-2.1/dprep/R/mardia.R | 2 +-
dprep-2.1/dprep/R/maxdist.R | 2 +-
dprep-2.1/dprep/R/maxlof.R | 2 +-
dprep-2.1/dprep/R/midpoints.R | 2 +-
dprep-2.1/dprep/R/mmnorm.R | 2 +-
dprep-2.1/dprep/R/mo3.R | 2 +-
dprep-2.1/dprep/R/mo4.R | 2 +-
dprep-2.1/dprep/R/moda.R | 2 +-
dprep-2.1/dprep/R/near1.R | 2 +-
dprep-2.1/dprep/R/near2.R | 2 +-
dprep-2.1/dprep/R/nnmiss.R | 2 +-
dprep-2.1/dprep/R/outbox.R | 2 +-
dprep-2.1/dprep/R/parallelplot.R | 4 ++--
dprep-2.1/dprep/R/radviz2d.R | 2 +-
dprep-2.1/dprep/R/rangenorm.R | 2 +-
dprep-2.1/dprep/R/reachability.R | 2 +-
dprep-2.1/dprep/R/redundancy.R | 2 +-
dprep-2.1/dprep/R/relief.R | 2 +-
dprep-2.1/dprep/R/reliefcat.R | 2 +-
dprep-2.1/dprep/R/reliefcont.R | 2 +-
dprep-2.1/dprep/R/robout.R | 4 ++--
dprep-2.1/dprep/R/row.matches.R | 2 +-
dprep-2.1/dprep/R/sbs1.R | 2 +-
dprep-2.1/dprep/R/score.R | 2 +-
dprep-2.1/dprep/R/sffs.R | 2 +-
dprep-2.1/dprep/R/sfs.R | 2 +-
dprep-2.1/dprep/R/sfs1.R | 2 +-
dprep-2.1/dprep/R/signorm.R | 2 +-
dprep-2.1/dprep/R/softmaxnorm.R | 2 +-
dprep-2.1/dprep/R/starcoord.R | 2 +-
dprep-2.1/dprep/R/surveyplot.R | 2 +-
dprep-2.1/dprep/R/tchisq.R | 2 +-
dprep-2.1/dprep/R/top.R | 26 ++++++++++++++++++++++----
dprep-2.1/dprep/R/vvalen.R | 2 +-
dprep-2.1/dprep/R/vvalen1.R | 2 +-
dprep-2.1/dprep/R/znorm.R | 2 +-
dprep-2.1/dprep/data/breastw.rda |binary
dprep-2.1/dprep/data/bupa.rda |binary
dprep-2.1/dprep/data/censusn.rda |binary
dprep-2.1/dprep/data/colon.rda |binary
dprep-2.1/dprep/data/diabetes.rda |binary
dprep-2.1/dprep/data/eje1dis.rda |binary
dprep-2.1/dprep/data/hawkins.rda |binary
dprep-2.1/dprep/data/heartc.rda |binary
dprep-2.1/dprep/data/hepatitis.rda |binary
dprep-2.1/dprep/data/ionosphere.rda |binary
dprep-2.1/dprep/data/my.iris.rda |binary
dprep-2.1/dprep/data/pp.golub.rda |binary
dprep-2.1/dprep/data/sonar.rda |binary
dprep-2.1/dprep/data/srbct.rda |binary
dprep-2.1/dprep/data/vehicle.rda |binary
dprep-2.1/dprep/man/rangenorm.Rd | 2 +-
dprep-2.1/dprep/man/robout.Rd | 6 +++---
89 files changed, 122 insertions(+), 97 deletions(-)
More information about RcmdrPlugin.qual at CRAN
Permanent link
Author: Jon Clayden
Diff between tractor.base versions 1.1.0 dated 2009-06-16 and 1.2.0 dated 2009-08-21
Title: Basic functions for the TractoR (tractography with R) bundle
Description: The tractor.base package consists of functions for working
with magnetic resonance images. It can read and write image
files stored in Analyze, NIfTI and DICOM formats (DICOM support
is read only), generate images for use as regions of interest,
and manipulate and visualise images.
DESCRIPTION | 10 +++++-----
R/bootstrap.R | 42 ++++++++++++++++++++++++++++++++++++++++++
R/dicom.R | 20 ++++++++++++--------
R/misc.R | 47 +++++++++++++++++++++++++++++++++++------------
man/list.object.Rd | 2 +-
man/metadata.dicom.Rd | 3 ++-
man/undocumented.Rd | 1 +
7 files changed, 98 insertions(+), 27 deletions(-)
Author: Kenneth Knoblauch
Title: Functions for analyzing psychophysical data in R
Description: An assortment of functions that could be useful in
analyzing data from pyschophysical experiments. It includes
functions for calculating d' from several different
experimental designs, links for m-alternative forced-choice
(mafc) data to be used with the binomial family in glm (and
possibly other contexts) and self-Start functions for
estimating gamma values for CRT screen calibrations.
Diff between psyphy versions 0.1-1 dated 2009-01-26 and 0.1-2 dated 2009-08-21
DESCRIPTION | 16 ++++++++++++---- inst/NEWS | 4 +++- man/RGB.Rd | 7 +------ man/dprime.oddity.Rd | 2 -- man/ecc2.Rd | 10 +++------- man/psyphy-package.Rd | 8 +------- man/summary.lambda.Rd | 2 -- 7 files changed, 20 insertions(+), 29 deletions(-)
Author: Charles Kooperberg
Diff between polspline versions 1.1.3 dated 2009-06-25 and 1.1.4 dated 2009-08-21
Title: Polynomial spline routines
Description: Routines for the polynomial spline fitting routines hazard
regression, hazard estimation with flexible tails, logspline,
lspec, polyclass, and polymars, by C. Kooperberg and co-authors
DESCRIPTION | 6 +++---
R/polspline.R | 2 +-
2 files changed, 4 insertions(+), 4 deletions(-)
Author: Fridolin Wild
Title: Latent Semantic Analysis
Description: The basic idea of latent semantic analysis (LSA) is, that
text do have a higher order (=latent semantic) structure which,
however, is obscured by word usage (e.g. through the use of
synonyms or polysemy). By using conceptual indices that are
derived statistically via a truncated singular value
decomposition (a two-mode factor analysis) over a given
document-term matrix, this variability problem can be overcome.
Diff between lsa versions 0.61 dated 2009-02-10 and 0.63 dated 2009-08-21
lsa-0.61/lsa/R/corpus_sample.R |only lsa-0.61/lsa/man/corpus_sample.Rd |only lsa-0.63/lsa/DESCRIPTION | 37 +- lsa-0.63/lsa/HISTORY | 525 +++++++++++++++++---------------- lsa-0.63/lsa/NAMESPACE | 5 lsa-0.63/lsa/R/associate.R |only lsa-0.63/lsa/R/query.R | 4 lsa-0.63/lsa/R/sample.textmatrix.R |only lsa-0.63/lsa/R/textmatrix.R | 16 - lsa-0.63/lsa/data/stopwords_fr.rda |only lsa-0.63/lsa/man/as.textmatrix.Rd | 4 lsa-0.63/lsa/man/associate.Rd |only lsa-0.63/lsa/man/corpora.Rd | 2 lsa-0.63/lsa/man/cosine.Rd | 2 lsa-0.63/lsa/man/dimcalc.Rd | 2 lsa-0.63/lsa/man/foldin.Rd | 2 lsa-0.63/lsa/man/print.textmatrix.Rd | 2 lsa-0.63/lsa/man/query.Rd | 4 lsa-0.63/lsa/man/sample.textmatrix.Rd |only lsa-0.63/lsa/man/stopwords.Rd | 17 - lsa-0.63/lsa/man/summary.textmatrix.Rd | 2 lsa-0.63/lsa/man/textmatrix.Rd | 6 lsa-0.63/lsa/man/triples.Rd | 2 lsa-0.63/lsa/man/weightings.Rd | 2 lsa-0.63/lsa/tests/lsa-tests.R | 8 25 files changed, 342 insertions(+), 300 deletions(-)
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.9.1.5 dated 2009-07-31 and 2.9.1.6 dated 2009-08-21
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 8 ++++----
R/epicalc.R | 6 ++++--
2 files changed, 8 insertions(+), 6 deletions(-)
Author: Peter Gilbert, Ian McKeague, and Yanqing Sun
Title: Continuous mark-specific relative risks for two groups
Description: Estimation and testing of continuous mark-specific
relative risks in two groups as described in Gilbert, P.,
McKeague, I. and Sun, Y. (2008) The 2-sample problem for
failure rates depending on a continuous mark: an application to
vaccine efficacy. Biostatistics 9, 2, 263-276. This package
implements the methods presented in the paper for testing
mark-specific hazards ratios and for estimation of
mark-specific incidence ratios that are cumulative in time or
cumulative in both time and the continuous mark.
Diff between cmprskContin versions 1.1 dated 2009-08-20 and 1.2 dated 2009-08-21
DESCRIPTION | 8 ++++---- NEWS |only configure | 2 +- configure.in | 2 +- man/cmprskContin-package.Rd | 4 ++-- 5 files changed, 8 insertions(+), 8 deletions(-)
Author: Kenneth Knoblauch and Laurence T. Maloney, based in part on C
code written by Laurence T. Maloney and J. N. Yang
Title: Maximum Likelihood Difference Scaling
Description: Difference scaling is a method for scaling perceived
supra-threshold differences. The package contains functions
that allow the user to design and run a difference scaling
experiment, to fit the resulting data by maximum likelihood and
test the internal validity of the estimated scale.
Diff between MLDS versions 0.2-0 dated 2009-08-19 and 0.2-1 dated 2009-08-21
DESCRIPTION | 8 ++++---- inst/NEWS | 3 +++ man/as.mlds.df.Rd | 7 +------ man/ix.mat2df.Rd | 1 - 4 files changed, 8 insertions(+), 11 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.97-5 dated 2009-08-21 and 0.97-6 dated 2009-08-21
DESCRIPTION | 6 +++--- R/check.R | 8 +------- R/find.gen.R | 6 ++++-- inst/NEWS | 6 ++++++ 4 files changed, 14 insertions(+), 12 deletions(-)
Author: Ben Bolker
Title: Ecological models and data (book support)
Description: Auxiliary functions and data sets for _Ecological Models
and Data_, a book presenting maximum likelihood estimation and
related topics for ecologists (ISBN 978-0-691-12522-0)
Diff between emdbook versions 1.1.1.1 dated 2008-10-17 and 1.2 dated 2009-08-21
emdbook-1.1.1.1/emdbook/man/traceplot.mcmc.Rd |only emdbook-1.2/emdbook/CITATION |only emdbook-1.2/emdbook/DESCRIPTION | 18 +- emdbook-1.2/emdbook/NEWS | 6 emdbook-1.2/emdbook/R/bayes.R |only emdbook-1.2/emdbook/R/emdbook.R | 172 +++--------------------- emdbook-1.2/emdbook/TODO | 2 emdbook-1.2/emdbook/inst/BUGS/myxogamma.bug |only emdbook-1.2/emdbook/inst/BUGS/negbinom.bug |only emdbook-1.2/emdbook/inst/BUGS/reefgobysurv.bug |only emdbook-1.2/emdbook/inst/BUGS/testmyxo.bug |only emdbook-1.2/emdbook/man/Damsel.Rd | 2 emdbook-1.2/emdbook/man/HPDregionplot.Rd | 2 emdbook-1.2/emdbook/man/dbetabinom.Rd | 9 - emdbook-1.2/emdbook/man/get.emdbook.packages.Rd | 2 emdbook-1.2/emdbook/man/lump.mcmc.list.Rd | 19 ++ emdbook-1.2/emdbook/man/scinot.Rd | 2 17 files changed, 64 insertions(+), 170 deletions(-)
Author: Duncan Temple Lang
Title: General network (HTTP/FTP/...) client interface for R
Description: The package allows one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Diff between RCurl versions 1.0-0 dated 2009-08-19 and 1.1-0 dated 2009-08-21
RCurl-1.0-0/RCurl/CodeGeneration/enum.c.001t.tu |only RCurl-1.0-0/RCurl/ii |only RCurl-1.0-0/RCurl/oo |only RCurl-1.1-0/RCurl/Changes.html | 10 ++++++ RCurl-1.1-0/RCurl/CodeGeneration/foo.html |only RCurl-1.1-0/RCurl/DESCRIPTION | 6 ++-- RCurl-1.1-0/RCurl/R/aclassesEnums.R |only RCurl-1.1-0/RCurl/R/curl.S | 8 ++++- RCurl-1.1-0/RCurl/R/getURLContent.R | 2 - RCurl-1.1-0/RCurl/R/options.S | 10 +++--- RCurl-1.1-0/RCurl/R/xbits.R |only RCurl-1.1-0/RCurl/inst/CurlSSL/cacert.pem |only RCurl-1.1-0/RCurl/inst/CurlSSL/google.pem |only RCurl-1.1-0/RCurl/inst/CurlSSL/logfile |only RCurl-1.1-0/RCurl/inst/CurlSSL/myBundle.crt |only RCurl-1.1-0/RCurl/inst/CurlSSL/ok.R |only RCurl-1.1-0/RCurl/inst/CurlSSL/server.pem |only RCurl-1.1-0/RCurl/inst/doc/fileUploads.html |only RCurl-1.1-0/RCurl/inst/doc/fileUploads.pdf |only RCurl-1.1-0/RCurl/inst/doc/philosophy.html | 36 ++++++++++++------------ RCurl-1.1-0/RCurl/inst/doc/philosophy.pdf |only RCurl-1.1-0/RCurl/man/getBitIndicators.Rd | 2 - RCurl-1.1-0/RCurl/man/getCurlHandle.Rd | 14 ++++++++- RCurl-1.1-0/RCurl/man/getURL.Rd | 9 ++++-- RCurl-1.1-0/RCurl/src/Makevars | 4 +- 25 files changed, 64 insertions(+), 37 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.97-4 dated 2009-08-21 and 0.97-5 dated 2009-08-21
DESCRIPTION | 6 +-- R/find.gen.R | 104 ++++++++++++++--------------------------------------------- inst/NEWS | 4 ++ 3 files changed, 33 insertions(+), 81 deletions(-)
Author: Charles Kooperberg
Diff between logspline versions 2.1.2 dated 2009-01-27 and 2.1.3 dated 2009-08-21
Title: Logspline density estimation routines
Description: Routines for the logspline density estimation.
oldlogspline uses the same algorithm as the logspline 1.0.x
package - the Kooperberg and Stone (1992) algorithm (with an
improved interface). The recomended routine logspline uses an
algorithm from Stone et al (1997).
DESCRIPTION | 17 ++++++++++-------
R/logspline.R | 2 +-
2 files changed, 11 insertions(+), 8 deletions(-)
Author: Jouni Lehtonen
Diff between KFAS versions 0.3.1 dated 2009-08-19 and 0.3.2 dated 2009-08-21
Title: Multivariate Kalman filter and smoother, simulation smoother and
forecasting
Description: Fast multivariate Kalman filter, smoother, simulation
smoother and forecasting. Uses exact diffuse initialisation
when distributions of some or all elements of initial state
vector are unknown.
KFAS-0.3.1/KFAS/R/kfas.R |only
KFAS-0.3.2/KFAS/DESCRIPTION | 8 ++++----
KFAS-0.3.2/KFAS/R/KFAS.R |only
3 files changed, 4 insertions(+), 4 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.97-3 dated 2009-08-20 and 0.97-4 dated 2009-08-21
DESCRIPTION | 8 +-- R/estimable2fis.R | 2 inst/NEWS | 4 + tests/foldtest.Rout.save | 109 +++++++++++++++++++++++++---------------------- 4 files changed, 68 insertions(+), 55 deletions(-)