Author: Kurt Hornik, David Meyer, Christian Buchta
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and
matrices, based on index arrays and simple triplet
representations, respectively.
Diff between slam versions 0.1-3 dated 2009-08-13 and 0.1-4 dated 2009-08-26
DESCRIPTION | 8 ++++---- R/matrix.R | 11 +++++------ 2 files changed, 9 insertions(+), 10 deletions(-)
Author: Jing Hua Zhao and colleagues with inputs from Kurt Hornik and
Brian Ripley
Title: Genetic analysis package
Description: It is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it
contains functions for sample size calculations of both
population-based and family-based designs, classic twin models,
probability of familial disease aggregation, kinship
calculation, some statistics in linkage analysis, and
association analysis involving one or more genetic markers
including haplotype analysis with or without environmental
covariates.
Diff between gap versions 1.0-17 dated 2009-01-02 and 1.0-20 dated 2009-08-26
ChangeLog | 24 ++++++++++++++++++++++-- DESCRIPTION | 27 +++++++++++++++------------ NAMESPACE | 4 ++-- R/b2r.R |only R/fbsize.R | 19 +++++++++---------- R/metareg.R | 4 ++-- R/mhtplot.R | 8 ++++---- R/mvmeta.R |only inst/doc/gap.Rnw | 11 +++++++---- inst/doc/gap.bib | 16 +++++++++++++++- inst/doc/gap.pdf |binary inst/doc/index.html | 2 +- man/LDkl.Rd | 2 +- man/b2r.Rd |only man/fbsize.Rd | 12 ++++++++---- man/gap-package.Rd | 6 ++++-- man/genecounting.Rd | 22 +++++++++++----------- man/hap.Rd | 42 +++++++++++++++++++++--------------------- man/mhtplot.Rd | 15 +++++++++++---- man/mvmeta.Rd |only src/2ld.c | 2 +- 21 files changed, 134 insertions(+), 82 deletions(-)
Author: Kim Nimon
Diff between yhat versions 1.0-1 dated 2009-08-20 and 1.0-2 dated 2009-08-26
Title: Interpreting Regression Effects
Description: The purpose of this package is to provide methods for
variance partitioning for linear models and canonical
correlation and methods for interpreting regression effects
using beta weights, standardized beta weights, structure
coefficients, and adjusted effect sizes.
yhat-1.0-1/yhat/R/regr.R |only
yhat-1.0-2/yhat/DESCRIPTION | 8 ++++----
yhat-1.0-2/yhat/R/regr.r |only
yhat-1.0-2/yhat/man/yhat-package.Rd | 2 +-
4 files changed, 5 insertions(+), 5 deletions(-)
Author: Jeremy Stephens
Diff between yaml versions 1.0.1 dated 2008-11-14 and 1.0.2 dated 2009-08-26
Title: Methods to convert R to YAML and back
Description: This package implements the Syck YAML parser by _why
(formerly http://www.whytheluckystiff.net/syck) for R. There
are also methods to convert R objects into YAML.
yaml-1.0.1/yaml/.gitignore |only
yaml-1.0.2/yaml/DESCRIPTION | 12 ++++++++----
yaml-1.0.2/yaml/R/as.yaml.R | 7 +++++--
yaml-1.0.2/yaml/inst/CHANGELOG | 3 +++
yaml-1.0.2/yaml/tests/as_yaml_test.R | 6 ++++++
5 files changed, 22 insertions(+), 6 deletions(-)
Author: Stefan Wilhelm
Diff between tmvtnorm versions 0.5-1 dated 2009-05-04 and 0.7-2 dated 2009-08-26
Title: Truncated Multivariate Normal Distribution
Description: Computes truncated multivariate normal probabilities,
quantiles and densities, including one-dimensional and
bivariate marginal densities. Random number generation.
Computes first and second moments (i.e. mean and covariance
matrix) for the double-truncated case.
tmvtnorm-0.5-1/tmvtnorm/.project |only
tmvtnorm-0.5-1/tmvtnorm/Makefile |only
tmvtnorm-0.5-1/tmvtnorm/Rplots.pdf |only
tmvtnorm-0.5-1/tmvtnorm/Rplots.ps |only
tmvtnorm-0.5-1/tmvtnorm/TODO.txt |only
tmvtnorm-0.5-1/tmvtnorm/Verbesserungen.txt |only
tmvtnorm-0.5-1/tmvtnorm/prof.out |only
tmvtnorm-0.5-1/tmvtnorm/prof2.out |only
tmvtnorm-0.5-1/tmvtnorm/readme.txt |only
tmvtnorm-0.5-1/tmvtnorm/rmvnorm.out |only
tmvtnorm-0.5-1/tmvtnorm/rtmvnorm.out |only
tmvtnorm-0.5-1/tmvtnorm/sampling.R |only
tmvtnorm-0.7-2/tmvtnorm/DESCRIPTION | 14 +--
tmvtnorm-0.7-2/tmvtnorm/NAMESPACE | 2
tmvtnorm-0.7-2/tmvtnorm/R/bivariate-marginal-density.R |only
tmvtnorm-0.7-2/tmvtnorm/R/dmvtnorm-marginal.R | 73 ++++++++++++++---
tmvtnorm-0.7-2/tmvtnorm/R/dmvtnorm.R | 40 ++++++---
tmvtnorm-0.7-2/tmvtnorm/R/mtmvnorm.R |only
tmvtnorm-0.7-2/tmvtnorm/R/rtmvnorm.R | 45 +++++++---
tmvtnorm-0.7-2/tmvtnorm/demo/demo1.R | 19 ++++
tmvtnorm-0.7-2/tmvtnorm/man/dmvtnorm-marginal.Rd | 2
tmvtnorm-0.7-2/tmvtnorm/man/dtmvnorm.marginal2.Rd |only
tmvtnorm-0.7-2/tmvtnorm/man/mtmvnorm.Rd |only
tmvtnorm-0.7-2/tmvtnorm/man/tmvtnorm.Rd | 4
tmvtnorm-0.7-2/tmvtnorm/release-notes.txt | 26 ++++++
25 files changed, 186 insertions(+), 39 deletions(-)
Author: Christopher Jackson
Diff between msm versions 0.9.2 dated 2009-07-18 and 0.9.3 dated 2009-08-26
Title: Multi-state Markov and hidden Markov models in continuous time
Description: Functions for fitting general continuous-time Markov and
hidden Markov multi-state models to longitudinal data. Both
Markov transition rates and the hidden Markov output process
can be modelled in terms of covariates. A variety of
observation schemes are supported, including processes observed
at arbitrary times, completely-observed processes, and censored
states.
ChangeLog | 16 +++++++++++++++-
DESCRIPTION | 8 ++++----
R/msm.R | 7 +++----
inst/NEWS | 15 ++++++++++++++-
inst/doc/msm-manual.pdf |binary
man/msm.Rd | 2 +-
src/doc/msm-manual.Rnw | 18 +++++++++---------
tests/simple.R | 17 +++++++++++++++--
8 files changed, 61 insertions(+), 22 deletions(-)
Author: Christian Hennig
Diff between fpc versions 1.2-4 dated 2009-05-06 and 1.2-6 dated 2009-08-26
Title: Fixed point clusters, clusterwise regression and discriminant
plots
Description: Fuzzy and crisp fixed point cluster analysis based on
Mahalanobis distance and linear regression fixed point
clusters. Semi-explorative, semi-model-based clustering
methods, operating on n*p data, do not need prespecification of
number of clusters, produce overlapping clusters. Symmetric and
asymmetric discriminant projections separate groups optimally,
used to visualize the separation of groupings, visual cluster
validation. Clusterwise linear regression by normal mixture
modeling. Cluster validation statistics for distance based
clustering including corrected Rand index. Clusterwise cluster
stability assessment. DBSCAN clustering. Interface functions
for many clustering methods implemented in R. Note that the use
of the package mclust (called by function prabclust) is
protected by a special license, see
http://www.stat.washington.edu/mclust/license.txt, particularly
point 6.
DESCRIPTION | 10 +++++-----
INDEX | 4 ++--
R/clusterboot.R | 4 ++--
man/clusterboot.Rd | 18 ++++++++----------
man/kmeansCBI.Rd | 2 +-
5 files changed, 18 insertions(+), 20 deletions(-)
Author: Nathan Stephens
Diff between hacks versions 0.1-8 dated 2009-05-05 and 0.1-9 dated 2009-08-26
Title: Convenient R Functions
Description: This package contains useful functions.
DESCRIPTION | 8 ++++----
R/mh.r |only
man/mh.rd |only
3 files changed, 4 insertions(+), 4 deletions(-)
Author: Duncan Temple Lang
Title: General network (HTTP/FTP/...) client interface for R
Description: The package allows one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Diff between RCurl versions 1.1-0 dated 2009-08-21 and 1.2-0 dated 2009-08-26
Changes.html | 11 ++++++++++- DESCRIPTION | 6 +++--- R/getURLContent.R | 10 +++++++++- 3 files changed, 22 insertions(+), 5 deletions(-)
Author: Didier Leibovici
Diff between PTAk versions 1.1-20 dated 2009-02-17 and 1.1-22 dated 2009-08-26
Title: Principal Tensor Analysis on k modes
Description: A multiway method to decompose a tensor (array) of any
order, as a generalisation of SVD also supporting non-identity
metrics and penalisations. 2-way SVD with these extensions is
also available. The package includes also some other multiway
methods: PCAn (Tucker-n) and PARAFAC/CANDECOMP with these
extensions.
CITATION |only
DESCRIPTION | 29 +
LICENSE | 729 +++++++++++++++++++++++++++++++++++++++++++++++---
R/PTAk.R | 19 +
man/howtoPTAk.Rd | 17 -
man/preprocessings.Rd | 10
6 files changed, 748 insertions(+), 56 deletions(-)