Author: Hugo Andres Gutierrez Rojas
Diff between TeachingSampling versions 0.8.1 dated 2009-05-24 and 1.0.2 dated 2009-09-03
More information about TeachingSampling at CRAN
Title: Sampling designs and parameter estimation in finite population
Description: Foundations of inference in survey sampling
DESCRIPTION | 8 +-
R/E.PPS.r | 2
R/E.STPPS.r | 2
R/HH.r | 2
R/OrderWR.r |only
R/PikHol.r |only
R/Wk.r | 23 +++---
man/Domains.rd | 6 -
man/E.2SI.rd | 15 ++--
man/E.BE.rd | 6 -
man/E.Beta.rd | 4 -
man/E.PO.rd | 6 -
man/E.PPS.rd | 6 -
man/E.Quantile.rd | 6 -
man/E.SI.rd | 6 -
man/E.STPPS.rd | 6 -
man/E.STSI.rd | 6 -
man/E.SY.rd | 6 -
man/E.WR.rd | 6 -
man/E.piPS.rd | 13 ++-
man/GREG.SI.rd | 6 -
man/HH.rd | 6 -
man/HT.rd | 6 -
man/IPFP.rd | 4 -
man/Ik.rd | 6 -
man/Lucy.rd | 4 -
man/Marco.rd | 4 -
man/OrderWR.r.rd |only
man/Pik.rd | 6 -
man/PikHol.rd |only
man/S.BE.rd | 8 +-
man/S.PO.rd | 6 -
man/S.PPS.rd | 6 -
man/S.SI.rd | 6 -
man/S.STPPS.rd | 6 -
man/S.STSI.rd | 6 -
man/S.SY.rd | 4 -
man/S.WR.rd | 6 -
man/S.piPS.rd | 6 -
man/Support.rd | 6 -
man/T.SIC.rd | 6 -
man/Wk.rd | 180 ++++++++++++++++++++++++++++++++++++++----------------
42 files changed, 247 insertions(+), 170 deletions(-)
Permanent link
Author: Josh Buckner
Diff between gputools versions 0.1-1 dated 2009-06-25 and 0.1-3 dated 2009-09-03
Title: A few GPU enabled functions
Description: This package provides R interfaces to a handful of common
statistical algorithms. These algorithms are implemented in
parallel using a mixture of nVidia's CUDA langauge and CUBLAS
library. On a computer equiped with an nVidia GPU some of
these functions may be substantially more efficient than native
R routines.
gputools-0.1-1/gputools/R/gpuCor.R.in |only
gputools-0.1-1/gputools/R/gpuGranger.R.in |only
gputools-0.1-1/gputools/R/gpuHclust.R.in |only
gputools-0.1-1/gputools/R/gpuLr.R.in |only
gputools-0.1-1/gputools/R/gpuMatMult.R.in |only
gputools-0.1-1/gputools/R/gpuMi.R.in |only
gputools-0.1-1/gputools/R/gpuQr.R.in |only
gputools-0.1-1/gputools/README |only
gputools-0.1-1/gputools/man/gpuLr.Rd |only
gputools-0.1-1/gputools/src/nocuda.c |only
gputools-0.1-1/gputools/src/nocuda.h |only
gputools-0.1-3/gputools/DESCRIPTION | 8
gputools-0.1-3/gputools/INSTALL |only
gputools-0.1-3/gputools/NAMESPACE | 4
gputools-0.1-3/gputools/NEWS |only
gputools-0.1-3/gputools/R/chooseGpu.R |only
gputools-0.1-3/gputools/R/fake.R |only
gputools-0.1-3/gputools/R/getGpuId.R |only
gputools-0.1-3/gputools/R/gpuCor.R |only
gputools-0.1-3/gputools/R/gpuGranger.R |only
gputools-0.1-3/gputools/R/gpuHclust.R |only
gputools-0.1-3/gputools/R/gpuMatMult.R |only
gputools-0.1-3/gputools/R/gpuMi.R |only
gputools-0.1-3/gputools/R/gpuQr.R |only
gputools-0.1-3/gputools/R/gpuSolve.R |only
gputools-0.1-3/gputools/R/gpuSvm.R.in | 16 -
gputools-0.1-3/gputools/cleanup | 2
gputools-0.1-3/gputools/configure | 243 ++++++++++++++-
gputools-0.1-3/gputools/configure.ac | 81 ++++-
gputools-0.1-3/gputools/man/chooseGpu.Rd |only
gputools-0.1-3/gputools/man/getAucEstimate.Rd | 4
gputools-0.1-3/gputools/man/getGpuId.Rd |only
gputools-0.1-3/gputools/man/gpuCor.Rd | 40 +-
gputools-0.1-3/gputools/man/gpuDist.Rd | 4
gputools-0.1-3/gputools/man/gpuDistClust.Rd | 10
gputools-0.1-3/gputools/man/gpuGranger.Rd | 23 -
gputools-0.1-3/gputools/man/gpuHclust.Rd | 17 -
gputools-0.1-3/gputools/man/gpuMi.Rd | 10
gputools-0.1-3/gputools/man/gpuQr.Rd | 44 +-
gputools-0.1-3/gputools/man/gpuSolve.Rd | 32 +-
gputools-0.1-3/gputools/man/gpuSvmPredict.Rd | 12
gputools-0.1-3/gputools/man/gpuSvmTrain.Rd | 14
gputools-0.1-3/gputools/man/gpuTtest.Rd | 3
gputools-0.1-3/gputools/src/Makefile.in | 36 +-
gputools-0.1-3/gputools/src/classification.cu | 57 +++
gputools-0.1-3/gputools/src/classification.h | 18 +
gputools-0.1-3/gputools/src/correlation.cu | 315 ++++++++++++--------
gputools-0.1-3/gputools/src/correlation.h | 4
gputools-0.1-3/gputools/src/cuseful.cu | 37 +-
gputools-0.1-3/gputools/src/cuseful.h | 12
gputools-0.1-3/gputools/src/fake.c |only
gputools-0.1-3/gputools/src/granger.cu | 49 ++-
gputools-0.1-3/gputools/src/hcluster.cu | 154 +++++----
gputools-0.1-3/gputools/src/kendall.cu |only
gputools-0.1-3/gputools/src/kendall.h |only
gputools-0.1-3/gputools/src/lr.cu | 67 ++--
gputools-0.1-3/gputools/src/matmult.cu | 17 -
gputools-0.1-3/gputools/src/mi.cu | 9
gputools-0.1-3/gputools/src/qrdecomp.cu | 405 +++++++++++++++++++++++---
gputools-0.1-3/gputools/src/qrdecomp.h | 7
gputools-0.1-3/gputools/src/rinterface.cu | 131 +++++---
gputools-0.1-3/gputools/src/rinterface.h | 33 +-
gputools-0.1-3/gputools/src/sort.cu | 5
gputools-0.1-3/gputools/tools |only
64 files changed, 1373 insertions(+), 550 deletions(-)
Author: Arthur Allignol
Title: Empirical Transition Matrix
Description: Matrix of transition probabilities for any
time-inhomogeneous multistate model with finite state space
Diff between etm versions 0.4-3 dated 2009-06-14 and 0.4-6 dated 2009-09-03
ChangeLog | 27 +++++++++++++++++++++++++++ DESCRIPTION | 8 ++++---- NAMESPACE | 4 +++- R/ci.transfo.R | 33 +++++++++++++++++---------------- R/clos.R | 28 ++++++++++++++++++++++++---- R/etm.R | 32 ++++++++++++++++++++------------ R/extract.R |only R/print.etm.R | 2 +- R/print.summary.etm.R | 2 +- R/transfoData.R |only R/xyplot.etm.R | 6 +++++- man/etm.Rd | 12 ++++++------ man/etmprep.Rd |only man/plot.clos.etm.Rd | 8 ++++---- man/print.etm.Rd | 2 +- man/sir.cont.Rd | 2 +- man/summary.etm.Rd | 12 ++++++++---- man/trprob_trcov.Rd |only man/xyplot.etm.Rd | 12 ++++++++---- tests |only 20 files changed, 130 insertions(+), 60 deletions(-)
Author: Timothy H. Keitt
Diff between rgdal versions 0.6-14 dated 2009-08-19 and 0.6-17 dated 2009-09-03
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.3.1) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
ChangeLog | 22 +++++++++++-
DESCRIPTION | 8 ++--
NAMESPACE | 1
R/gdal.R | 4 +-
R/sp_gdal.R | 79 +++++++++++++++++++++++++++++++++-----------
inst/ChangeLog | 22 +++++++++++-
man/GDALRasterBand-class.Rd | 12 ++++++
man/SpatialGDAL-class.Rd | 4 +-
man/readGDAL.Rd | 4 +-
man/showWKT.Rd | 2 -
src/gdal-bindings.cpp | 66 +++++++++++++++++++++++++++++++++++-
11 files changed, 192 insertions(+), 32 deletions(-)
Author: Tarn Duong
Diff between feature versions 1.2.3 dated 2009-04-14 and 1.2.4 dated 2009-09-03
Title: Feature significance for multivariate kernel density estimation
Description: Feature significance for multivariate kernel density
estimation
feature-1.2.3/feature/R-future |only
feature-1.2.4/feature/DESCRIPTION | 8 ++++----
feature-1.2.4/feature/R/SignifFeatureData.R | 10 ++++++----
feature-1.2.4/feature/R/featureSignif.R | 2 +-
feature-1.2.4/feature/inst/doc/feature.pdf |binary
feature-1.2.4/feature/man/feature-package.Rd | 2 +-
6 files changed, 12 insertions(+), 10 deletions(-)
Author: Achim Zeileis, Bettina Gruen
Title: Automatic Generation of Standardized Exams for Large-Lecture
Courses
Description: Sweave-based automatic generation of exams with
multiple-choice questions and arithmetic problems.
Diff between exams versions 1.0-1 dated 2009-06-24 and 1.0-2 dated 2009-09-03
DESCRIPTION | 8 ++++---- NEWS | 6 ++++++ R/exams.R | 32 ++++++++++++++++++++++++++------ inst/doc/exams.Rnw | 22 ++++++++++++++-------- inst/doc/exams.pdf |binary man/exams.Rd | 10 ++++++++-- 6 files changed, 58 insertions(+), 20 deletions(-)
Author: Hector Corrada Bravo, with contributions from Stefan Theussl
Title: R interface to CPLEX
Description: R interface to CPLEX solvers for linear, quadratic, and
(linear and quadratic) mixed integer programs. A working
installation of CPLEX is required for usage of the Rcplex
package. See the file "INSTALL" for details on how to install
the Rcplex package in Linux/Unix-like systems and Windows
systems. Support for sparse matrices is provided by an S3-style
class "simple_triplet_matrix" from package slam and by objects
from the Matrix package class hierarchy.
Diff between Rcplex versions 0.2-2 dated 2009-07-18 and 0.2-3 dated 2009-09-03
DESCRIPTION | 10 ++++------ inst/NEWS | 35 +++++++++++++++++++++++++++++------ 2 files changed, 33 insertions(+), 12 deletions(-)
Author: David St John
Title: Standard Backtests for Technical Trading Rules in Financial Data
Description: Four core functions evaluate the efficacy of a technical
trading rule. Conditional return statistics, Bootstrap
resampling statistics, Test for data snooping bias among
parameter choices, and Robustness of parameter choices
Diff between ttrTests versions 1.0 dated 2009-08-19 and 1.1 dated 2009-09-03
ttrTests-1.0/ttrTests/R/realityCheck.R |only ttrTests-1.0/ttrTests/man/realityCheck.Rd |only ttrTests-1.1/ttrTests/DESCRIPTION | 15 +- ttrTests-1.1/ttrTests/R/cReturns.R | 13 ++ ttrTests-1.1/ttrTests/R/dataSnoop.R |only ttrTests-1.1/ttrTests/R/defaults.R | 22 ++-- ttrTests-1.1/ttrTests/R/deleteNA.R |only ttrTests-1.1/ttrTests/R/nullModel.R | 52 ++++++++-- ttrTests-1.1/ttrTests/R/paramPersist.R | 75 ++++++++++---- ttrTests-1.1/ttrTests/R/paramStats.R | 134 +++++++++++++++++++++----- ttrTests-1.1/ttrTests/R/returnStats.R | 72 ++++++++++++- ttrTests-1.1/ttrTests/man/dataSnoop.Rd |only ttrTests-1.1/ttrTests/man/defaults.Rd | 4 ttrTests-1.1/ttrTests/man/deleteNA.Rd |only ttrTests-1.1/ttrTests/man/generateSample.Rd | 5 ttrTests-1.1/ttrTests/man/nullModel.Rd | 9 + ttrTests-1.1/ttrTests/man/paramPersist.Rd | 41 +++---- ttrTests-1.1/ttrTests/man/paramStats.Rd | 35 ++++-- ttrTests-1.1/ttrTests/man/returnStats.Rd | 6 - ttrTests-1.1/ttrTests/man/ttrTests-package.Rd | 30 +++-- 20 files changed, 383 insertions(+), 130 deletions(-)
Author: Roger Bivand
Title: Interface between GRASS 6 geographical information system and R
Description: Interpreted interface between GRASS 6 geographical
information system and R, based on starting R from within the
GRASS environment, or running free-standing R in a temporary
GRASS location; the package provides facilities for using all
GRASS commands from the R command line.
Diff between spgrass6 versions 0.6-7 dated 2009-08-16 and 0.6-8 dated 2009-09-03
DESCRIPTION | 8 ++++---- R/xml1.R | 33 +++++++++++++++++++++++++++------ 2 files changed, 31 insertions(+), 10 deletions(-)
Author: Kurt Hornik, Ingo Feinerer, Martin Kober
Title: Spherical k-Means Clustering
Description: Algorithms to compute spherical k-means partitions.
Features several methods, including a genetic and a simple
fixed-point algorithm and an interface to the CLUTO vcluster
program.
Diff between skmeans versions 0.1 dated 2009-08-13 and 0.1-1 dated 2009-09-03
DESCRIPTION | 6 +-- R/skmeans.R | 91 +++++++++++++++++++++++++++++++++++++-------------------- man/cluto.Rd | 7 ++-- man/skmeans.Rd | 54 +++++++++++++++++++-------------- 4 files changed, 98 insertions(+), 60 deletions(-)
Author: Andreas Alfons
Title: Simulation Framework
Description: A general framework for statistical simulation.
Diff between simFrame versions 0.1 dated 2009-08-13 and 0.1.1 dated 2009-09-03
DESCRIPTION | 8 +++--- NEWS |only R/cluster.R | 6 ++--- R/clusterRunSimulation.R | 6 ++--- R/clusterSetup.R | 6 ++--- R/runSimulation.R | 42 ++++++++++++++++++++++++++++++++++++ R/simApply.R | 6 ++--- R/simBwplot.R | 15 +++++++++--- R/simDensityplot.R | 21 ++++++++++++------ R/simSapply.R | 6 ++--- R/simXyplot.R | 16 +++++++++---- data/eusilc.RData |binary man/DCARContControl-class.Rd | 11 +++++---- man/DataControl-class.Rd | 2 - man/clusterRunSimulation-methods.Rd | 7 ++---- man/clusterRunSimulation.Rd | 3 +- man/clusterSetup.Rd | 3 +- man/eusilc.Rd | 12 +++++----- man/simBwplot-methods.Rd | 9 +++++-- man/simBwplot.Rd | 2 - man/simDensityplot-methods.Rd | 9 +++++-- man/simDensityplot.Rd | 2 - man/simFrame-package.Rd | 4 +-- man/simXyplot-methods.Rd | 5 +++- 24 files changed, 137 insertions(+), 64 deletions(-)
Author: Michael Donohue, Ronghui Xu
Title: Proportional Hazards Mixed-effects Model (PHMM)
Description: Fits proportional hazards model incorporating random
effects using an EM agorithm using Markov Chain Monte Carlo at
E-step.
Diff between phmm versions 0.5 dated 2009-03-19 and 0.6 dated 2009-09-03
DESCRIPTION | 10 +++++----- NAMESPACE | 1 + R/phmm.R | 10 ++++++++++ R/phmm.design.R | 5 ++++- man/phmm.Rd | 13 ++++++++++--- man/plot.phmm.Rd |only 6 files changed, 30 insertions(+), 9 deletions(-)
Author: Duncan Murdoch
Title: Support for orientation data
Description: Representations, conversions and display of orientation
SO(3) data. See the orientlib help topic for details.
Diff between orientlib versions 0.9.2 dated 2009-05-29 and 0.9.3 dated 2009-09-03
DESCRIPTION | 6 +-- NEWS | 87 +++++++++++++++++++++++++++++++------------------------ man/boat3d.Rd | 8 ++--- man/orientlib.Rd | 4 +- man/orientlm.Rd | 4 +- 5 files changed, 61 insertions(+), 48 deletions(-)
Author: Christophe Genolini
Title: Longitudinal Data
Description: Tools for Longitudinal Data
Diff between longitudinalData versions 0.5 dated 2009-06-10 and 0.6 dated 2009-09-03
DESCRIPTION | 8 ++--- NAMESPACE |only R/function.r | 4 ++ R/longData.r | 2 - R/partition.r | 16 +++++++++- R/plotLongData.r | 2 - man/LongData-class.Rd | 2 - man/imputation.Rd | 47 ++++++++++++++--------------- man/longData-internal.Rd | 74 ++++++++++++++++++++++++++++------------------- man/ordered.Rd |only testsDev/testLongData.r | 4 ++ testsDev/testPartition.r | 10 ++++-- 12 files changed, 105 insertions(+), 64 deletions(-)
More information about longitudinalData at CRAN
Permanent link
Author: Karoly Antal
Diff between gnumeric versions 0.5-1 dated 2009-08-20 and 0.5-2 dated 2009-09-03
Title: Read data from files readable by gnumeric
Description: Read data files readable by gnumeric into R. Can read
whole sheet or a range, from several file formats, including
the native format of gnumeric. Reading is done by using
ssconvert (a file converter utility included in the gnumeric
distribution http://projects.gnome.org/gnumeric/) to convert
the requested part to CSV.
DESCRIPTION | 24 ++++++++++-----------
R/read.gnumeric.R | 10 +++++++-
man/read.gnumeric.sheet.Rd | 51 ++++++++++++++++++++++++++-------------------
3 files changed, 51 insertions(+), 34 deletions(-)
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.9.1.7 dated 2009-08-25 and 2.9.2.0 dated 2009-09-03
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 8 ++++----
R/epicalc.R | 4 ++--
2 files changed, 6 insertions(+), 6 deletions(-)
Author: Christian Ritz
Diff between drc versions 1.7-2 dated 2009-07-18 and 1.7-7 dated 2009-09-03
Title: Analysis of dose-response curves
Description: Analysis of one or multiple curves with focus on
concentration-response, dose-response and time-response curves
used, for example in biology, environmental sciences, medicine,
pharmacology, toxicology.
drc-1.7-2/drc/R/comped.R |only
drc-1.7-2/drc/R/contAnovaTest.R |only
drc-1.7-2/drc/man/comped.Rd |only
drc-1.7-7/drc/DESCRIPTION | 8 ++++----
drc-1.7-7/drc/NAMESPACE | 4 +++-
drc-1.7-7/drc/NEWS | 16 ++++++++++++++--
drc-1.7-7/drc/R/cedergreen.R | 4 +---
drc-1.7-7/drc/R/drmLOFls.R | 12 +++++++++++-
drc-1.7-7/drc/R/maED.R | 37 ++++++++++++++++++++++++-------------
drc-1.7-7/drc/R/modelFit.R | 4 ++++
drc-1.7-7/drc/R/nec.R |only
drc-1.7-7/drc/R/showNews.R | 3 ++-
drc-1.7-7/drc/R/twophase.R |only
drc-1.7-7/drc/R/ucedergreen.R | 12 ++++++------
drc-1.7-7/drc/man/CRS.5a.Rd | 9 ++++++---
drc-1.7-7/drc/man/ED.drc.Rd | 15 ++++++++-------
drc-1.7-7/drc/man/W2.Rd | 1 +
drc-1.7-7/drc/man/W4.Rd | 23 ++++++++++++++++++++---
drc-1.7-7/drc/man/anova.drc.Rd | 2 +-
drc-1.7-7/drc/man/maED.Rd | 4 +++-
drc-1.7-7/drc/man/ryegrass.Rd | 20 +++++++++++---------
drc-1.7-7/drc/man/secalonic.Rd | 29 ++++++++++++++++++-----------
drc-1.7-7/drc/man/twophase.Rd |only
23 files changed, 137 insertions(+), 66 deletions(-)
Author: Achim Zeileis
Title: Beta Regression
Description: Beta regression for modeling rates and proportions.
Diff between betareg versions 1.2 dated 2006-07-12 and 2.0-0 dated 2009-09-03
betareg-1.2/betareg/R/anova.betareg.R |only betareg-1.2/betareg/R/br.fit.R |only betareg-1.2/betareg/R/cooks.distance.betareg.R |only betareg-1.2/betareg/R/df.residual.betareg.R |only betareg-1.2/betareg/R/envelope.beta.R |only betareg-1.2/betareg/R/estfun.betareg.R |only betareg-1.2/betareg/R/gen.lev.betareg.R |only betareg-1.2/betareg/R/hatvalues.betareg.R |only betareg-1.2/betareg/R/logLik.betareg.R |only betareg-1.2/betareg/R/predict.betareg.R |only betareg-1.2/betareg/R/residuals.betareg.R |only betareg-1.2/betareg/R/summary.betareg.R |only betareg-1.2/betareg/R/vcov.betareg.R |only betareg-1.2/betareg/data/prater.rda |only betareg-1.2/betareg/data/pratergrouped.rda |only betareg-1.2/betareg/man/anova.betareg.Rd |only betareg-1.2/betareg/man/br.fit.Rd |only betareg-1.2/betareg/man/cooks.distance.betareg.Rd |only betareg-1.2/betareg/man/df.residual.betareg.Rd |only betareg-1.2/betareg/man/envelope.beta.Rd |only betareg-1.2/betareg/man/estfun.betareg.Rd |only betareg-1.2/betareg/man/gen.lev.betareg.Rd |only betareg-1.2/betareg/man/hatvalues.betareg.Rd |only betareg-1.2/betareg/man/logLik.betareg.Rd |only betareg-1.2/betareg/man/prater.Rd |only betareg-1.2/betareg/man/pratergrouped.Rd |only betareg-1.2/betareg/man/vcov.betareg.Rd |only betareg-2.0-0/betareg/DESCRIPTION | 18 betareg-2.0-0/betareg/NAMESPACE |only betareg-2.0-0/betareg/NEWS |only betareg-2.0-0/betareg/R/betareg.R | 488 +++++++++++++++++++--- betareg-2.0-0/betareg/R/leverage.R |only betareg-2.0-0/betareg/R/plot.betareg.R | 153 ++++-- betareg-2.0-0/betareg/data/FoodExpenditure.rda |only betareg-2.0-0/betareg/data/GasolineYield.rda |only betareg-2.0-0/betareg/inst |only betareg-2.0-0/betareg/man/FoodExpenditure.Rd |only betareg-2.0-0/betareg/man/GasolineYield.Rd |only betareg-2.0-0/betareg/man/betareg.Rd | 143 +++++- betareg-2.0-0/betareg/man/betareg.control.Rd |only betareg-2.0-0/betareg/man/gleverage.Rd |only betareg-2.0-0/betareg/man/plot.betareg.Rd | 63 +- betareg-2.0-0/betareg/man/predict.betareg.Rd | 50 +- betareg-2.0-0/betareg/man/residuals.betareg.Rd | 68 ++- betareg-2.0-0/betareg/man/summary.betareg.Rd | 92 +++- 45 files changed, 845 insertions(+), 230 deletions(-)
Author: Chunquan Li
Title: Annotation and identification of the KEGG pathways.
Description: SubpathwayMiner is an R-based software for flexible
pathway identification. (1) SubpathwayMiner can provide users
with sub-pathway annotation and identification of metabolic
pathways based on enzyme commission (EC) numbers. (2)
SubpathwayMiner can provide users with sub-pathway annotation
and identification based on KEGG Orthology (KO) identifiers.
(new!) (3) SubpathwayMiner can provide annotation and
identification of entire pathways. (4) SubpathwayMiner can
support most of organisms in the KEGG GENE database. (5) Data
can be automatically updated on demand by the user.
Diff between SubpathwayMiner versions 1.1 dated 2008-11-28 and 2.0 dated 2009-09-03
DESCRIPTION | 36 R/go2go.R | 32 R/id.R | 12 R/initialize.R | 61 - R/ko.R |only R/visualize.R | 25 data/ath_ncbi-geneid.rda |binary data/cel_ncbi-geneid.rda |binary data/dme_ncbi-geneid.rda |binary data/eco_ncbi-geneid.rda |binary data/hsa_ensembl-hsa.rda |binary data/hsa_ncbi-geneid.rda |binary data/hsa_ncbi-gi.rda |binary data/mmu_ncbi-geneid.rda |binary data/osa_ncbi-geneid.rda |binary data/sce_ncbi-geneid.rda |binary data/sce_ncbi-gi.rda |binary data/sce_sgd-sce.rda |binary inst/doc/Rplots.pdf | 1431 ++++++++++++++++++++++++++++++++++++- inst/doc/SubpathwayMiner.Rnw | 61 + inst/doc/SubpathwayMiner.pdf |binary man/KO2gene.Rd |only man/KOuGraph.Rd |only man/Ke2gEnvironment.Rd | 7 man/SubpathwayMiner-internal.Rd | 14 man/cutoffAnn.Rd | 8 man/dGraph.Rd | 4 man/ec2gene.Rd | 4 man/gene2KO.Rd |only man/gene2ec.Rd | 4 man/getAnn.Rd | 12 man/getDefaultKOPathway.Rd |only man/getDefaultKOUndirectedGraph.Rd |only man/getDefaultUndirectedGraph.Rd | 6 man/getGeneFromKO.Rd |only man/getKOAnn.Rd |only man/getKOFromGene.Rd |only man/getKcSubGraph.Rd | 18 man/getMpAnn.Rd | 2 man/gotoKEGG.Rd | 10 man/ke2g.Rd | 5 man/kpidList.Rd |only man/plotAnn.Rd | 10 man/plotKOAnn.Rd |only man/printAnn.Rd | 4 man/uGraph.Rd | 6 man/updateGraphs.Rd | 17 man/updateKOGraphs.Rd |only man/updateOrgAndIdType.Rd | 2 49 files changed, 1636 insertions(+), 155 deletions(-)
More information about SubpathwayMiner at CRAN
Permanent link
Author: Henrik Bengtsson
Diff between R.matlab versions 1.2.4 dated 2008-10-30 and 1.2.5 dated 2009-09-03
Title: Read and write of MAT files together with R-to-Matlab
connectivity
Description: This package provides methods to read and write MAT files.
It also makes it possible to communicate (evaluate code, send
and retrieve objects etc.) with Matlab v6 or higher running
locally or on a remote host.
DESCRIPTION | 35 ++++++++++++++++----------
inst/NEWS | 13 ++++++++-
inst/externals/MatlabServer.m | 21 ++++++++++-----
man/1._The_Matlab_server_running_in_Matlab.Rd | 21 ++++++++++-----
man/Matlab.Rd | 2 -
5 files changed, 62 insertions(+), 30 deletions(-)
Author: Jarrod Hadfield
Title: MCMC Generalised Linear Mixed Models
Description: MCMC Generalised Linear Mixed Models
Diff between MCMCglmm versions 1.10 dated 2009-05-15 and 1.11 dated 2009-09-03
MCMCglmm-1.10/MCMCglmm/src/cs_directproduct.c |only MCMCglmm-1.10/MCMCglmm/src/cs_directproduct.h |only MCMCglmm-1.10/MCMCglmm/src/cs_multiplyR.c |only MCMCglmm-1.10/MCMCglmm/src/cs_multiplyR.h |only MCMCglmm-1.11/MCMCglmm/DESCRIPTION | 8 MCMCglmm-1.11/MCMCglmm/NAMESPACE | 20 MCMCglmm-1.11/MCMCglmm/R/Ddivergence.R | 6 MCMCglmm-1.11/MCMCglmm/R/MCMCglmm.R | 815 MCMCglmm-1.11/MCMCglmm/R/buildZ.R |only MCMCglmm-1.11/MCMCglmm/R/find.componets.R |only MCMCglmm-1.11/MCMCglmm/R/inverseA.R | 6 MCMCglmm-1.11/MCMCglmm/R/mterms.R |only MCMCglmm-1.11/MCMCglmm/R/plotprior.R |only MCMCglmm-1.11/MCMCglmm/R/posterior.mode.R | 10 MCMCglmm-1.11/MCMCglmm/R/prunePed.R | 27 MCMCglmm-1.11/MCMCglmm/R/rIW.R | 39 MCMCglmm-1.11/MCMCglmm/R/rbv.R | 16 MCMCglmm-1.11/MCMCglmm/R/split.direct.sum.R |only MCMCglmm-1.11/MCMCglmm/data/BTdata.tab |only MCMCglmm-1.11/MCMCglmm/data/BTped.tab |only MCMCglmm-1.11/MCMCglmm/inst/doc/Figures/TEST.R | 384 MCMCglmm-1.11/MCMCglmm/inst/doc/Figures/Tutorial.Rnw | 38 MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-006.eps | 5970 ++-- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-006.pdf | 7068 ++--- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-012.eps |11204 ++++---- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-012.pdf |14091 +++++----- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-015.eps |16219 ++++++------ MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-015.pdf |22037 ++++++++--------- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-019.eps | 5664 ++-- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-019.pdf | 7022 ++--- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-021.eps | 109 MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-021.pdf | 92 MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-028.eps | 6082 ++-- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-028.pdf | 7090 ++--- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-030.eps | 6142 ++-- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-030.pdf | 7072 ++--- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-035.eps | 9541 +++---- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-035.pdf |11090 ++++---- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-PMprob.eps | 109 MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-PMprob.pdf | 88 MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-Pcor.eps | 6082 ++-- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-Pcor.pdf | 7090 ++--- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-model1H2.eps | 6142 ++-- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-model1H2.pdf | 7072 ++--- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-model1Sol.eps | 5970 ++-- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-model1Sol.pdf | 7068 ++--- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-model1VCV.eps |11204 ++++---- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-model1VCV.pdf |14091 +++++----- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-model2VCV.eps |16879 ++++++------- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-model2VCV.pdf |22034 ++++++++-------- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-model3VCV.eps | 5664 ++-- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-model3VCV.pdf | 7022 ++--- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-model6H2.eps | 9541 +++---- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial-model6H2.pdf |11090 ++++---- MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial.Rnw | 101 MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial.aux |only MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial.bbl |only MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial.blg |only MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial.log |only MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial.pdf |binary MCMCglmm-1.11/MCMCglmm/inst/doc/Tutorial.toc |only MCMCglmm-1.11/MCMCglmm/man/BTdata.Rd |only MCMCglmm-1.11/MCMCglmm/man/BTped.Rd |only MCMCglmm-1.11/MCMCglmm/man/Ddivergence.Rd | 6 MCMCglmm-1.11/MCMCglmm/man/Dexpressions.Rd | 2 MCMCglmm-1.11/MCMCglmm/man/Dtensor.Rd | 64 MCMCglmm-1.11/MCMCglmm/man/MCMCglmm.Rd | 220 MCMCglmm-1.11/MCMCglmm/man/MCMCglmmPackage.Rd | 79 MCMCglmm-1.11/MCMCglmm/man/PlodiaPO.Rd | 2 MCMCglmm-1.11/MCMCglmm/man/PlodiaR.Rd | 2 MCMCglmm-1.11/MCMCglmm/man/PlodiaRB.Rd | 2 MCMCglmm-1.11/MCMCglmm/man/Tri2M.Rd | 2 MCMCglmm-1.11/MCMCglmm/man/at.level.Rd |only MCMCglmm-1.11/MCMCglmm/man/at.set.Rd |only MCMCglmm-1.11/MCMCglmm/man/evalDtensor.Rd | 2 MCMCglmm-1.11/MCMCglmm/man/inverseA.Rd | 84 MCMCglmm-1.11/MCMCglmm/man/knorm.Rd | 2 MCMCglmm-1.11/MCMCglmm/man/krzanowski.test.Rd | 4 MCMCglmm-1.11/MCMCglmm/man/kunif.Rd | 2 MCMCglmm-1.11/MCMCglmm/man/leg.Rd |only MCMCglmm-1.11/MCMCglmm/man/list2bdiag.Rd | 9 MCMCglmm-1.11/MCMCglmm/man/plotprior.Rd |only MCMCglmm-1.11/MCMCglmm/man/plotsubspace.Rd | 8 MCMCglmm-1.11/MCMCglmm/man/posterior.mode.Rd | 9 MCMCglmm-1.11/MCMCglmm/man/prunePed.Rd | 10 MCMCglmm-1.11/MCMCglmm/man/rIW.Rd | 107 MCMCglmm-1.11/MCMCglmm/src/General.h | 3 MCMCglmm-1.11/MCMCglmm/src/MCMCglmm.cc | 301 MCMCglmm-1.11/MCMCglmm/src/MCMCglmm.h | 21 MCMCglmm-1.11/MCMCglmm/src/cs_directsum.c |only MCMCglmm-1.11/MCMCglmm/src/cs_directsum.h |only MCMCglmm-1.11/MCMCglmm/src/cs_directsumupdate.c |only MCMCglmm-1.11/MCMCglmm/src/cs_invR.c | 8 MCMCglmm-1.11/MCMCglmm/src/cs_kroneckerA.h | 1 MCMCglmm-1.11/MCMCglmm/src/cs_kroneckerAupdate.c |only MCMCglmm-1.11/MCMCglmm/src/cs_kroneckerI.h | 1 MCMCglmm-1.11/MCMCglmm/src/cs_kroneckerIupdate.c |only MCMCglmm-1.11/MCMCglmm/src/cs_omega.h | 2 MCMCglmm-1.11/MCMCglmm/src/cs_omegaupdate.c |only MCMCglmm-1.11/MCMCglmm/src/cs_rCinvwishart.c | 43 MCMCglmm-1.11/MCMCglmm/src/cs_rCinvwishart.h | 2 MCMCglmm-1.11/MCMCglmm/src/cs_tmultiplyupdate.c |only MCMCglmm-1.11/MCMCglmm/src/cs_tmultiplyupdate.h |only MCMCglmm-1.11/MCMCglmm/src/dcutopints.c |only MCMCglmm-1.11/MCMCglmm/src/dcutpoints.h |only MCMCglmm-1.11/MCMCglmm/src/inverseA.cc | 6 MCMCglmm-1.11/MCMCglmm/src/rIW.cc | 24 MCMCglmm-1.11/MCMCglmm/src/rbv.cc | 15 MCMCglmm-1.11/MCMCglmm/src/rtnorm.c |only MCMCglmm-1.11/MCMCglmm/src/rtnorm.h |only 110 files changed, 138188 insertions(+), 137964 deletions(-)
Author: Frank E Harrell Jr
Diff between Hmisc versions 3.6-1 dated 2009-08-04 and 3.7-0 dated 2009-09-03
Title: Harrell Miscellaneous
Description: The Hmisc library contains many functions useful for data
analysis, high-level graphics, utility operations, functions
for computing sample size and power, importing datasets,
imputing missing values, advanced table making, variable
clustering, character string manipulation, conversion of S
objects to LaTeX code, and recoding variables. Please submit
bug reports to 'http://biostat.mc.vanderbilt.edu/trac/Hmisc'.
DESCRIPTION | 14
INDEX |only
R/Misc.s | 104 ++-
R/biVar.s | 2
R/bootkm.s | 4
R/discrete.s | 2
R/do.s | 2
R/errbar.s | 162 ++--
R/labcurve.s | 4
R/latex.s | 3
R/na.detail.response.s | 3
R/recode.s | 2
R/rm.boot.s | 2
R/sas.get.s | 17
R/spower.s | 72 ++
R/strgraphwrap.s |only
R/subplot.s | 4
R/summary.formula.s | 5
R/survfit.km.s | 10
R/transace.s | 11
R/transcan.s | 36 -
R/xYplot.s | 1104 +++++++++++++++++-----------------
man/Hmisc-internal.Rd | 2
man/Misc.Rd | 32
man/Overview.Rd | 2
man/aregImpute.Rd | 7
man/bootkm.Rd | 4
man/bpplot.Rd | 2
man/bystats.Rd | 4
man/data.frame.create.modify.check.Rd | 25
man/errbar.Rd | 31
man/escapeRegex.Rd | 4
man/event.convert.Rd | 2
man/getHdata.Rd | 2
man/label.Rd | 14
man/latex.Rd | 202 ++----
man/mdb.get.Rd | 5
man/prselect.Rd |only
man/ps.slide.Rd | 219 +++---
man/rcorrp.cens.Rd | 4
man/rcspline.eval.Rd | 2
man/rcspline.plot.Rd | 2
man/rcspline.restate.Rd | 2
man/reShape.Rd | 220 +++---
man/requirePackage.Rd | 2
man/sedit.Rd | 4
man/smean.sd.Rd | 2
man/spower.Rd | 108 ++-
man/stata.get.Rd | 6
man/subplot.Rd | 2
man/summary.formula.Rd | 12
man/transace.Rd | 4
man/transcan.Rd | 46 -
man/units.Rd | 3
man/unix/sas.get.Rd | 2
man/wtd.stats.Rd | 23
man/xYplot.Rd | 8
57 files changed, 1399 insertions(+), 1173 deletions(-)
Author: Yurii Aulchenko, Maksim Struchalin
Title: genome-wide SNP association analysis
Description: a package for genome-wide association analysis between
quantitative or binary traits and single-nucleiotide
polymorphisms (SNPs).
Diff between GenABEL versions 1.4-3 dated 2009-07-23 and 1.4-4 dated 2009-09-03
GenABEL-1.4-3/GenABEL/GenABEL |only GenABEL-1.4-3/GenABEL/R.save |only GenABEL-1.4-3/GenABEL/tmp |only GenABEL-1.4-4/GenABEL/.project |only GenABEL-1.4-4/GenABEL/CHANGES.LOG | 8 GenABEL-1.4-4/GenABEL/DESCRIPTION | 8 GenABEL-1.4-4/GenABEL/R/hom.R | 12 GenABEL-1.4-4/GenABEL/R/perid.summary.R | 2 GenABEL-1.4-4/GenABEL/inst/doc/ABEL-tutorial.pdf |262369 +++++++++++++++++++++- GenABEL-1.4-4/GenABEL/inst/doc/GenABEL-manual.pdf |23629 + GenABEL-1.4-4/GenABEL/man/hom.Rd | 15 GenABEL-1.4-4/GenABEL/src/gwaa.c | 51 12 files changed, 268940 insertions(+), 17154 deletions(-)
Author: Anatol Sargin
Diff between DAKS versions 1.0-0 dated 2009-02-26 and 2.0-0 dated 2009-09-03
Title: Data Analysis and Knowledge Spaces
Description: Functions and example datasets for the psychometric theory
of knowledge spaces. This package implements data analysis
methods and procedures for simulating data and transforming
different formulations in knowledge space theory.
DESCRIPTION | 27 ++++++++++++++-------------
NAMESPACE | 11 +++++++++--
R/corr_iita.r | 18 +++++++++++++++---
R/hasse.r | 19 ++++++++++++-------
R/iita.r | 10 ++++++----
R/mini_iita.r | 14 +++++++++++---
R/orig_iita.r | 18 +++++++++++++++---
R/pattern.r | 12 +++++++++---
R/pop_iita.r | 33 +++++++++++++++++++++++++++------
R/pop_variance.r | 7 ++++---
R/print.iita.r |only
R/print.pat.r |only
R/print.summpopiita.r |only
R/print.ztest.r |only
R/print_popiita.r |only
R/summary.popiita.r |only
R/variance.r | 43 ++++++++++++-------------------------------
R/z_test.r |only
man/DAKS-package.Rd | 7 ++++---
man/corr_iita.Rd | 7 +++++--
man/iita.Rd | 5 ++++-
man/mini_iita.Rd | 7 +++++--
man/orig_iita.Rd | 7 +++++--
man/pattern.Rd | 1 +
man/pop_iita.Rd | 8 ++++++--
man/print.iita.Rd |only
man/print.pat.Rd |only
man/print.popiita.Rd |only
man/print.summpopiita.Rd |only
man/print.ztest.Rd |only
man/simu.Rd | 6 +++---
man/summary.popiita.Rd |only
man/z_test.Rd |only
33 files changed, 167 insertions(+), 93 deletions(-)