Author: Zachariah Gompert, C. Alex Buerkle
Title: methods for analyzing introgression between divergent lineages
Description: introgress provides functions for analyzing introgression
of genotypes between divergent, hybridizing lineages, including
estimating genomic clines from multi-locus genotype data and
testing for deviations from neutral expectations. Functions are
also provided for maximum likelihood estimation of molecular
hybrid index and graphical analysis.
Diff between introgress versions 1.1 dated 2009-03-08 and 1.2 dated 2009-09-07
DESCRIPTION | 21 + R/calc.intersp.het.R | 2 R/clines.plot.R | 39 ++ R/compare.clines.R | 629 +++++++++++++++++++++++++++++++++++++---------- R/delta.R | 2 R/est.h.R | 2 R/fit.c.clines.R | 2 R/fit.invariant.clines.R | 2 R/fixup.combos.touse.R | 2 R/genomic.clines.R | 128 +++++++-- R/h.func.R | 2 R/like.h.R | 2 R/mk.image.R | 2 R/per.locus.like.R | 2 R/prepare.data.R | 2 R/s.wrapper.R | 2 R/support.limit.R | 2 R/test.combinations.R | 2 R/test.data.objects.R | 4 R/test.genotypes.R | 2 R/triangle.plot.R | 4 data/AdmixDataSim1.rda |binary data/AdmixDataSim2.rda |binary data/AdmixDom.rda |binary data/LociD.rda |binary data/LociDataSim1.rda |binary data/LociDataSim2.rda |binary data/p1D.rda |binary data/p1DataSim2.rda |binary data/p2D.rda |binary data/p2DataSim2.rda |binary man/clines.plot.Rd | 42 ++- man/compare.clines.Rd | 26 + man/genomic.clines.Rd | 19 + man/prepare.data.Rd | 9 35 files changed, 745 insertions(+), 206 deletions(-)
Author: Olivia Lau
Diff between eiPack versions 0.1-2 dated 2007-02-15 and 0.1-5 dated 2009-09-07
Title: eiPack: Ecological Inference and Higher-Dimension Data
Management
Description: Provides methods for analyzing RxC ecological contingency
tables using the extreme case analysis, ecological regression,
and Multinomial-Dirichlet ecological inference models. Also
provides tools for manipulating higher-dimension data objects.
eiPack-0.1-2/eiPack/R/plotMD.R |only
eiPack-0.1-5/eiPack/DESCRIPTION | 26 +++++++++++++++++---------
eiPack-0.1-5/eiPack/R/bounds.R | 7 ++++---
eiPack-0.1-5/eiPack/R/delta.R | 2 +-
eiPack-0.1-5/eiPack/R/ei.MD.bayes.R | 12 ++++++------
eiPack-0.1-5/eiPack/R/lambda.MD.R | 2 +-
eiPack-0.1-5/eiPack/R/read.betas.R | 2 ++
eiPack-0.1-5/eiPack/inst |only
eiPack-0.1-5/eiPack/man/bounds.Rd | 5 ++---
eiPack-0.1-5/eiPack/man/cover.plot.Rd | 2 +-
eiPack-0.1-5/eiPack/man/density.plot.Rd | 2 +-
eiPack-0.1-5/eiPack/man/ei.MD.bayes.Rd | 16 ++++++----------
eiPack-0.1-5/eiPack/man/ei.reg.Rd | 7 +++----
eiPack-0.1-5/eiPack/man/ei.reg.bayes.Rd | 6 +++---
eiPack-0.1-5/eiPack/man/lambda.MD.Rd | 3 ++-
eiPack-0.1-5/eiPack/man/lambda.reg.Rd | 6 +++---
eiPack-0.1-5/eiPack/man/lambda.reg.bayes.Rd | 2 +-
eiPack-0.1-5/eiPack/man/mergeMD.Rd | 2 +-
eiPack-0.1-5/eiPack/man/plot.bounds.Rd | 2 +-
eiPack-0.1-5/eiPack/man/read.betas.Rd | 2 +-
eiPack-0.1-5/eiPack/man/tuneMD.Rd | 2 +-
21 files changed, 57 insertions(+), 51 deletions(-)
Author: Martin Maechler
Title: R MPFR - Multiple Precision Floating-Point Reliable
Description: The package aims at providing S4 classes and methods for
arithmetic including transcendental ("special") functions for
arbitrary precision floating point numbers. To this end, it
interfaces to the LGPL'ed MPFR (Multiple Precision
Floating-Point Reliable) Library which itself is based on the
GMP (GNU Multiple Precision) Library.
Diff between Rmpfr versions 0.1-6 dated 2009-09-04 and 0.1-7 dated 2009-09-07
ChangeLog | 15 ++++++++++++++- DESCRIPTION | 8 ++++---- R/mpfr.R | 4 ++++ TODO | 8 +++++--- man/special-math.Rd | 3 +++ man/utils.Rd | 10 ++++++++++ src/Ops.c | 6 +++++- src/Rmpfr_utils.h | 1 + src/init.c | 2 ++ src/utils.c | 4 ++++ 10 files changed, 52 insertions(+), 9 deletions(-)
Author: Pierre Chausse
Diff between gmm versions 1.1-0 dated 2009-08-27 and 1.1-1 dated 2009-09-07
Title: Generalized Method of Moments and Generalized Empirical
Likelihood
Description: It is a complete suite to estimate models based on moment
conditions. It includes the two step Generalized method of
moments (GMM) of Hansen(1982), the iterated GMM and continuous
updated estimator (CUE) of Hansen-Eaton-Yaron(1996) and several
methods that belong to the Generalized Empirical Likelihood
(GEL) family of estimators, as presented by Smith(1997),
Kitamura(1997), Newey-Smith(2004) and Anatolyev(2005).
DESCRIPTION | 10
inst/doc/gmm_with_R.pdf | 2305 +++++++++++++++++++++++++-----------------------
inst/doc/gmm_with_R.rnw | 1
3 files changed, 1220 insertions(+), 1096 deletions(-)
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann
Gneiting, University of Washington With contributions from
Bobby Yuen and Michael Polokowski
Title: Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts
from ensemble forecasts and weather observations.
Diff between ensembleBMA versions 4.3 dated 2009-06-27 and 4.3.1 dated 2009-09-07
CHANGELOG | 3 DESCRIPTION | 8 R/fitBMAgamma0.R | 594 ++++++++++++++++++++++--------------------------------- 3 files changed, 251 insertions(+), 354 deletions(-)
Author: Terry Therneau, original R port by Thomas Lumley
Title: Survival analysis, including penalised likelihood.
Description: survival analysis: descriptive statistics, two-sample
tests, parametric accelerated failure models, Cox model.
Delayed entry (truncation) allowed for all models; interval
censoring for parametric models. Case-cohort designs.
Diff between survival versions 2.35-5 dated 2009-08-25 and 2.35-6 dated 2009-09-07
Changelog | 7 +++++++ DESCRIPTION | 10 ++++++---- NAMESPACE | 2 ++ R/model.frame.survreg.S |only R/model.matrix.coxph.R |only data/survexp.mn.R | 2 +- data/survexp.us.R | 6 ++++-- man/frailty.Rd | 7 +++++-- man/model.frame.coxph.Rd |only man/model.matrix.coxph.Rd |only src/agmart.c | 4 ++-- src/agmart2.c | 4 ++-- src/chinv2.c | 4 ++-- src/cholesky2.c | 4 ++-- src/coxdetail.c | 4 ++-- src/coxscore.c | 4 ++-- src/dmatrix.c | 4 ++-- src/doloop.c | 4 ++-- src/pyears3.c | 4 ++-- tests/factor2.R |only tests/factor2.Rout.save |only tests/model.matrix.R |only tests/model.matrix.Rout.save |only 23 files changed, 43 insertions(+), 27 deletions(-)
Author: Karline Soetaert
Diff between marelac versions 1.2-1 dated 2009-02-23 and 2.0 dated 2009-09-07
Title: Tools for Aquatic Sciences
Description: Datasets, constants, conversion factors, utilities for
MArine, Riverine, Estuarine, LAcustrine and Coastal science.
The package contains among others: (1) chemical and physical
constants and datasets, e.g. atomic weights, gas constants, the
earths bathymetry; (2) conversion factors (e.g. gram to mol to
liter, barometric units, temperature, salinity); (3) physical
functions, e.g. to estimate concentrations of conservative
substances, gas transfer and diffusion coefficients, the
Coriolis force and gravity; (4) thermophysical properties of
the seawater, as from the UNESCO polynomial or from the more
recent derivation based on a Gibbs function.
marelac-1.2-1/marelac/R/Conversions.r |only
marelac-1.2-1/marelac/R/Diffusion.r |only
marelac-1.2-1/marelac/R/Oceanography.r |only
marelac-1.2-1/marelac/data/AtomicWeight.r |only
marelac-1.2-1/marelac/data/Constants.r |only
marelac-1.2-1/marelac/data/Nemaspec.rda |only
marelac-1.2-1/marelac/data/SCOC.rda |only
marelac-1.2-1/marelac/data/Zoogrowth.rda |only
marelac-1.2-1/marelac/inst/doc/Answers.pdf |only
marelac-1.2-1/marelac/inst/doc/Answers.rnw |only
marelac-1.2-1/marelac/inst/doc/Rplots.pdf |only
marelac-1.2-1/marelac/inst/doc/UsingR.pdf |only
marelac-1.2-1/marelac/inst/doc/UsingR.rnw |only
marelac-1.2-1/marelac/inst/doc/capture.pdf |only
marelac-1.2-1/marelac/inst/doc/marelac.rnw |only
marelac-1.2-1/marelac/inst/doc/tinn1.pdf |only
marelac-1.2-1/marelac/inst/lecture |only
marelac-1.2-1/marelac/man/Nemaspec.Rd |only
marelac-1.2-1/marelac/man/SCOC.Rd |only
marelac-1.2-1/marelac/man/Zoogrowth.Rd |only
marelac-1.2-1/marelac/man/cp.Rd |only
marelac-1.2-1/marelac/man/g2mol.Rd |only
marelac-1.2-1/marelac/man/l2mol.Rd |only
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marelac-1.2-1/marelac/man/satconc.Rd |only
marelac-2.0/marelac/DESCRIPTION | 37
marelac-2.0/marelac/NAMESPACE | 25
marelac-2.0/marelac/R/aaa.R |only
marelac-2.0/marelac/R/atmComp.R |only
marelac-2.0/marelac/R/convert_PStoAS.R |only
marelac-2.0/marelac/R/convert_RtoS.R |only
marelac-2.0/marelac/R/convert_StoCl.R |only
marelac-2.0/marelac/R/convert_StoR.R |only
marelac-2.0/marelac/R/convert_T.R |only
marelac-2.0/marelac/R/convert_p.R |only
marelac-2.0/marelac/R/coriolis.R |only
marelac-2.0/marelac/R/diffcoeff.R |only
marelac-2.0/marelac/R/earth_surf.R |only
marelac-2.0/marelac/R/gas_O2sat.R |only
marelac-2.0/marelac/R/gas_satconc.R |only
marelac-2.0/marelac/R/gas_schmidt.R |only
marelac-2.0/marelac/R/gas_solubility.R |only
marelac-2.0/marelac/R/gas_transfer.R |only
marelac-2.0/marelac/R/gravity.R |only
marelac-2.0/marelac/R/molvol.R |only
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marelac-2.0/marelac/R/ssd2rad.R |only
marelac-2.0/marelac/R/sw_adtgrad.R |only
marelac-2.0/marelac/R/sw_alpha.R |only
marelac-2.0/marelac/R/sw_beta.R |only
marelac-2.0/marelac/R/sw_comp.R |only
marelac-2.0/marelac/R/sw_conserv.R |only
marelac-2.0/marelac/R/sw_cp.R |only
marelac-2.0/marelac/R/sw_dens.R |only
marelac-2.0/marelac/R/sw_depth.R |only
marelac-2.0/marelac/R/sw_enthalpy.R |only
marelac-2.0/marelac/R/sw_entropy.R |only
marelac-2.0/marelac/R/sw_gibbs.R |only
marelac-2.0/marelac/R/sw_kappa.R |only
marelac-2.0/marelac/R/sw_kappa_t.R |only
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marelac-2.0/marelac/R/sw_tpot.R |only
marelac-2.0/marelac/R/sw_vel.R |only
marelac-2.0/marelac/R/vapor.R |only
marelac-2.0/marelac/R/vertmean.R |only
marelac-2.0/marelac/R/viscosity.R |only
marelac-2.0/marelac/data/AtomicWeight.R |only
marelac-2.0/marelac/data/AtomicWeight.txt |only
marelac-2.0/marelac/data/Constants.R |only
marelac-2.0/marelac/data/Oceans.R |only
marelac-2.0/marelac/data/gsw_data.dat |only
marelac-2.0/marelac/data/sw_sfac.R |only
marelac-2.0/marelac/inst/doc/marelac.Rnw |only
marelac-2.0/marelac/inst/doc/marelac.pdf |302173 ++++++++++++++++------------
marelac-2.0/marelac/inst/doc/vignettes.bib | 1587
marelac-2.0/marelac/inst/wishlist.txt |only
marelac-2.0/marelac/man/AtmComp.Rd |only
marelac-2.0/marelac/man/AtomicWeight.Rd | 65
marelac-2.0/marelac/man/Bathymetry.Rd | 32
marelac-2.0/marelac/man/Constants.Rd | 30
marelac-2.0/marelac/man/Oceans.Rd |only
marelac-2.0/marelac/man/convert_RtoS.Rd |only
marelac-2.0/marelac/man/convert_StoCl.Rd |only
marelac-2.0/marelac/man/convert_StoR.Rd |only
marelac-2.0/marelac/man/convert_T.Rd |only
marelac-2.0/marelac/man/convert_p.Rd |only
marelac-2.0/marelac/man/convert_salinity.Rd |only
marelac-2.0/marelac/man/coriolis.Rd | 42
marelac-2.0/marelac/man/diffcoeff.Rd | 207
marelac-2.0/marelac/man/earth_surf.Rd |only
marelac-2.0/marelac/man/gas_O2sat.Rd |only
marelac-2.0/marelac/man/gas_satconc.Rd |only
marelac-2.0/marelac/man/gas_schmidt.Rd |only
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marelac-2.0/marelac/man/marelac.Rd | 228
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marelac-2.0/marelac/man/ssd2rad.Rd |only
marelac-2.0/marelac/man/sw_adtgrad.Rd |only
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marelac-2.0/marelac/man/sw_beta.Rd |only
marelac-2.0/marelac/man/sw_comp.Rd |only
marelac-2.0/marelac/man/sw_conserv.Rd |only
marelac-2.0/marelac/man/sw_cp.Rd |only
marelac-2.0/marelac/man/sw_dens.Rd |only
marelac-2.0/marelac/man/sw_depth.Rd |only
marelac-2.0/marelac/man/sw_enthalpy.Rd |only
marelac-2.0/marelac/man/sw_entropy.Rd |only
marelac-2.0/marelac/man/sw_gibbs.Rd |only
marelac-2.0/marelac/man/sw_kappa.Rd |only
marelac-2.0/marelac/man/sw_kappa_t.Rd |only
marelac-2.0/marelac/man/sw_sfac.Rd |only
marelac-2.0/marelac/man/sw_svel.Rd |only
marelac-2.0/marelac/man/sw_tfreeze.Rd |only
marelac-2.0/marelac/man/sw_tpot.Rd |only
marelac-2.0/marelac/man/vapor.Rd |only
marelac-2.0/marelac/man/vertmean.Rd |only
marelac-2.0/marelac/man/viscosity.Rd | 72
marelac-2.0/marelac/src |only
128 files changed, 175384 insertions(+), 129114 deletions(-)
More information about marelacTeaching at CRAN
Permanent link
Author: Cyril Piou
Title: Pattern Oriented Modelling Information Criterion
Description: This package propose calculations of an information
criterion to check the quality of simulations results of
ABM/IBM or other non-linear rule-based models. The POMDEV
measure is based on the KL divergence and likelihood theory. It
basically indicates the deviance of simulation results from
field observations. Once POMDEV scores and metropolis-hasting
sampling on different model versions are effectuated, POMIC
scores can be calculated. This method is still under
development and further work are needed for the incorporation
of multiple patterns assessment.
Diff between Pomic versions 0.9.2 dated 2009-04-22 and 1.0.1 dated 2009-09-07
DESCRIPTION | 8 ++++---- INDEX | 4 +++- NEWS | 6 ++++++ R/pomdev.corrected.r | 8 +++++++- R/pomdev.extra.R | 7 +++++-- R/pomdev.r | 8 +++++++- R/pomdev.ts.r |only demo/00Index | 2 +- demo/demoPomic.r | 4 ++-- inst/CITATION | 10 +++++----- man/Pomic-package.Rd | 16 +++++++++++----- man/pomdev.ts.rd |only 12 files changed, 51 insertions(+), 22 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.97-7 dated 2009-08-24 and 0.97-8 dated 2009-09-07
DESCRIPTION | 8 ++++---- R/FrF2.R | 3 +-- R/pb.R | 14 ++++++++------ inst/NEWS | 10 ++++++++-- man/FrF2-package.Rd | 16 ++++++++++------ man/FrF2.Rd | 36 +++++++++++++++++++++--------------- man/pb.Rd | 19 ++++++++++++++----- man/utilitiesPB.Rd | 2 +- 8 files changed, 67 insertions(+), 41 deletions(-)
Author: Spencer Graves
Title: Companion to Tsay (2005) Analysis of Financial Time Series
Description: R companion to Tsay (2005) Analysis of Financial Time
Series, 2nd ed. (Wiley). Includes data sets, functions and
script files required to work some of the examples. Version
0.3-x includes R objects for all data files used in the text
and script files to recreate most of the analyses in chapters
1-3 and 9 plus parts of chapters 4 and 11.
Diff between FinTS versions 0.3-9 dated 2009-01-14 and 0.4-2 dated 2009-09-07
DESCRIPTION | 44 ++++++++++++++++++++++++-------------------- man/ARIMA.Rd | 4 ++-- man/Acf.Rd | 2 +- man/AutocorTest.Rd | 4 ++-- man/FinTS-package.Rd | 5 +++-- man/Unitroot.Rd | 35 ++++++++++++++++++----------------- man/as.yearmon2.Rd | 16 ++++++++-------- man/package.dir.Rd | 2 +- 8 files changed, 59 insertions(+), 53 deletions(-)
Author: Ulrike Groemping
Title: Wrapper package for design of experiments functionality
Description: This package creates various kinds of designs for
(industrial) experiments. It uses, and sometimes enhances,
design generation routines from other packages. Initially,
response surface designs from package rsm and latin hypercube
samples from package lhs have been implemented.
Diff between DoE.wrapper versions 0.6 dated 2009-08-25 and 0.6-1 dated 2009-09-07
DoE.wrapper-0.6-1/DoE.wrapper/DESCRIPTION | 8 DoE.wrapper-0.6-1/DoE.wrapper/inst/NEWS | 4 DoE.wrapper-0.6-1/DoE.wrapper/man/DoE.wrapper-package.Rd |only DoE.wrapper-0.6-1/DoE.wrapper/man/bbd.design.Rd | 6 DoE.wrapper-0.6-1/DoE.wrapper/man/ccd.augment.Rd | 9 DoE.wrapper-0.6-1/DoE.wrapper/man/ccd.design.Rd | 10 DoE.wrapper-0.6-1/DoE.wrapper/man/lhs.design.Rd | 11 DoE.wrapper-0.6-1/DoE.wrapper/tests/qua.design.test.Rout.save | 248 +++++----- DoE.wrapper-0.6/DoE.wrapper/man/DoE.wrapper-packge.Rd |only 9 files changed, 156 insertions(+), 140 deletions(-)
Author: Ulrike Groemping
Title: Full factorials, orthogonal arrays and base utilities for DoE
packages
Description: This package creates full factorial experimental designs
and designs based on orthogonal arrays for (industrial)
experiments. Additionally, it provides some utility functions
used also by other DoE packages.
Diff between DoE.base versions 0.8 dated 2009-08-25 and 0.9 dated 2009-09-07
DESCRIPTION | 8 - NAMESPACE | 14 ++ R/DesignAccessors.r | 5 - R/aggregate.design.R |only R/change.contr.R |only R/contr.FrF2.R | 2 R/fac.design.R | 19 ++- R/formula.design.R | 200 +++++++++++++++++++++++++++++++++++----- R/iscube.R |only R/lm.design.R |only R/oa.design.R | 11 +- R/qua.design.R | 5 - R/reptowide.R | 1 inst/NEWS | 31 +++++- man/DoE.base-package.Rd | 13 ++ man/class-design-methods.Rd | 68 ++++++++++++- man/contr.FrF2.Rd | 6 - man/formula.design.Rd | 54 ++++++++-- man/lm.design.Rd |only man/oa.design.Rd | 11 ++ man/qua.design.Rd | 48 ++++++--- tests/test_aggregate.R |only tests/test_aggregate.Rout.save |only tests/test_qua.design.R | 5 - tests/test_qua.design.Rout.save | 77 +++++++++++---- 25 files changed, 473 insertions(+), 105 deletions(-)
Author: Jari Oksanen, Roeland Kindt, Pierre Legendre, Bob O'Hara, Gavin
L. Simpson, Peter Solymos, M. Henry H. Stevens, Helene Wagner
Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other functions
for community and vegetation ecologists.
Diff between vegan versions 1.15-3 dated 2009-06-17 and 1.15-4 dated 2009-09-07
DESCRIPTION | 11 R/RsquareAdj.R | 52 + R/anosim.R | 14 R/anova.cca.R | 2 R/anova.ccabyterm.R | 2 R/betadisper.R | 7 R/biplot.rda.R | 4 R/capscale.R | 1 R/decorana.R | 4 R/dispindmorisita.R | 6 R/estaccumR.R |only R/fitted.capscale.R |only R/indpower.R |only R/mantel.correlog.R |only R/metaMDS.R | 23 R/metaMDSdist.R | 5 R/ordiGetData.R | 2 R/ordicluster.R | 2 R/ordiellipse.R | 31 R/ordihull.R | 18 R/ordilabel.R | 4 R/ordilattice.getEnvfit.R | 4 R/ordiplot3d.R | 11 R/ordisurf.R | 3 R/orditorp.R | 4 R/ordixyplot.R | 4 R/panel.ordi.R | 29 R/plot.mantel.correlog.R |only R/plot.nestedtemp.R | 12 R/plot.poolaccum.R |only R/plot.spantree.R | 9 R/points.cca.R | 10 R/poolaccum.R |only R/postMDS.R | 15 R/predict.rda.R | 17 R/print.mantel.correlog.R |only R/print.poolaccum.R |only R/radlattice.R |only R/rarefy.R | 2 R/read.cep.R | 2 R/rrarefy.R |only R/specaccum.R | 2 R/specpool.R | 6 R/specpool2vect.R | 6 R/summary.cca.R | 11 R/summary.ordiellipse.R |only R/summary.ordihull.R |only R/summary.poolaccum.R |only R/text.cca.R | 10 R/text.orditkplot.R | 2 R/wcmdscale.R | 23 inst/ChangeLog | 68 + inst/NEWS | 73 + inst/doc/FAQ-vegan.pdf |binary inst/doc/decision-vegan.pdf | 1642 +++++++++++++++++++++---------------------- inst/doc/decision-vegan.tex | 16 inst/doc/diversity-vegan.pdf |binary inst/doc/diversity-vegan.tex | 68 - inst/doc/intro-vegan.pdf |binary inst/doc/intro-vegan.tex | 71 - man/RsquareAdj.Rd |only man/anosim.Rd | 10 man/beals.Rd | 3 man/biplot.rda.Rd | 4 man/cca.Rd | 2 man/decorana.Rd | 4 man/dispindmorisita.Rd | 4 man/diversity.Rd | 12 man/humpfit.Rd | 4 man/indpower.Rd |only man/mantel.Rd | 2 man/mantel.correlog.Rd |only man/metaMDS.Rd | 10 man/mrpp.Rd | 4 man/nestedtemp.Rd | 3 man/oecosimu.Rd | 2 man/ordihull.Rd | 69 + man/ordixyplot.Rd | 12 man/permCheck.Rd | 1 man/permatfull.Rd | 2 man/permuted.index2.Rd | 1 man/plot.cca.Rd | 4 man/predict.cca.Rd | 39 - man/radfit.Rd | 12 man/rankindex.Rd | 4 man/scores.Rd | 3 man/specaccum.Rd | 14 man/specpool.Rd | 66 + man/varpart.Rd | 1 man/wcmdscale.Rd | 10 90 files changed, 1510 insertions(+), 1100 deletions(-)
Author: Tore Opsahl
Title: tnet: Software for Analysis of Weighted, Two-mode, and
Longitudinal networks
Description: R package to analyse weighted, two-mode, and longitudinal
networks.
Diff between tnet versions 0.1.0 dated 2009-06-16 and 0.1.1 dated 2009-09-07
DESCRIPTION | 10 +- R/as.tnet.R |only R/betweenness_w.R | 22 +++--- R/closeness_w.R | 21 ++---- R/clustering_tm.R |only R/clustering_w.R | 59 ++++++++--------- R/clustering_w_barrat.R | 32 ++++----- R/degree_w.R | 49 +++++--------- R/dichotomise.R | 19 +++-- R/distance_wRBGL.R | 26 +++---- R/projecting_tm.R | 39 +++++++---- R/random_values.R |only R/rg_reshuffling_tm.R | 37 +++++----- R/rg_reshuffling_w.R | 82 +++++++++--------------- R/rg_tm.R |only R/rg_w.R | 13 +-- R/shrink_to_weighted_network.R | 23 ++---- R/symmetrise.R | 59 ++++++++--------- R/weighted_richclub_tm.R | 10 ++ R/weighted_richclub_w.R | 49 +++++++------- man/Cross.Parker.Manufacturing.net.aware.Rd | 2 man/Cross.Parker.Manufacturing.net.info.Rd | 2 man/Cross.Parker.Manufacturing.node.location.Rd | 2 man/Cross.Parker.Manufacturing.node.orglevel.Rd | 2 man/Cross.Parker.Manufacturing.node.tenure.Rd | 2 man/Freemans.EIES.net.1.n48.Rd | 2 man/Freemans.EIES.net.2.n48.Rd | 2 man/Freemans.EIES.net.3.n32.Rd | 2 man/Freemans.EIES.node.Citations.n32.Rd | 2 man/Freemans.EIES.node.Discipline.n32.Rd | 2 man/OnlineComm.f1000.lnet.Rd | 6 - man/as.tnet.Rd |only man/betweenness_w.Rd | 10 +- man/closeness_w.Rd | 8 +- man/clustering_tm.Rd |only man/clustering_w.Rd | 4 - man/clustering_w_barrat.Rd | 6 - man/degree_w.Rd | 7 -- man/dichotomise.Rd | 4 - man/distance_w.Rd | 4 - man/projecting_tm.Rd | 4 - man/random_values.Rd |only man/rg_reshuffling_tm.Rd | 7 -- man/rg_reshuffling_w.Rd | 8 +- man/rg_tm.Rd |only man/shrink_to_weighted_network.Rd | 4 - man/symmetrise.Rd | 4 - man/tnet-package.Rd | 12 +-- man/weighted_richclub_tm.Rd | 10 +- man/weighted_richclub_w.Rd | 5 - 50 files changed, 322 insertions(+), 351 deletions(-)
Author: Søren Højsgaard
Diff between doBy versions 4.0.1 dated 2009-08-19 and 4.0.2 dated 2009-09-07
Title: Groupwise computations of summary statistics, general linear
contrasts and other utilities
Description: Facilities for groupwise computations of summary
statistics and other facilities for working with grouped data.
ChangeLog | 8
DESCRIPTION | 6
R/summaryBy.R | 537 ++++++++++++++++++++++++++++--------------------------
inst/doc/doBy.pdf | 525 +++++++++++++++++++++++++---------------------------
4 files changed, 547 insertions(+), 529 deletions(-)