Author: Robin K. S. Hankin
Title: The hypergeometric function
Description: The hypergeometric function, hypergeo(), for complex
numbers
Diff between hypergeo versions 1.1-8 dated 2008-08-22 and 1.2-1 dated 2009-09-08
DESCRIPTION | 13 ++++--- INDEX | 2 - R/hypergeo.R | 85 ++++++++++++++++++++++++++++++++++++++++-------- man/genhypergeo.Rd | 4 +- man/hypergeo-package.Rd | 8 +++- man/hypergeo.Rd | 8 +++- man/i15.3.6.Rd | 11 +++++- man/is.nonpos.Rd | 6 ++- 8 files changed, 110 insertions(+), 27 deletions(-)
Author: Robin K.S. Hankin
Title: A generalization of the Dirichlet distribution
Description: A suite of routines for the hyperdirichlet distribution
Diff between hyperdirichlet versions 1.1-8 dated 2009-04-15 and 1.3-0 dated 2009-09-08
DESCRIPTION | 6 R/hyperdirichlet.R | 236 inst/doc/correspondence.Rnw | 14 inst/doc/correspondence.bbl |only inst/doc/correspondence.blg |only inst/doc/correspondence.pdf |binary inst/doc/hyperdirichlet.Rnw | 473 inst/doc/hyperdirichlet.bib | 16 inst/doc/hyperdirichlet.pdf |172177 ++++++++++++++++++++++++++++++++++++++++-- inst/doc/vig.Rdata |only man/Arith.Rd | 18 man/B.Rd | 24 man/bernoulli.Rd | 3 man/binmat.Rd | 6 man/dhyperdirichlet.Rd | 10 man/dirichlet.Rd | 46 man/e_to_p.Rd | 6 man/fitz.Rd |only man/head.Rd | 14 man/hyperdirichlet-package.Rd | 2 man/hyperdirichlet.Rd | 7 man/justpairs.Rd | 2 man/matrix_to_HD.Rd | 3 man/maximum_likelihood.Rd | 56 man/paircomp.Rd | 2 man/params.Rd | 5 man/paulino.Rd | 2 man/pnames.Rd | 4 man/print.Rd | 8 man/uniform.Rd | 6 man/volleyball.Rd | 4 31 files changed, 165507 insertions(+), 7643 deletions(-)
More information about hyperdirichlet at CRAN
Permanent link
Author: Jonathan Harrington and others, IPS LMU Muenchen & IPDS CAU
Kiel
Title: Interface to the Emu Speech Database System
Description: Provides an interface to the Emu speech database system
and many special purpose functions for display and analysis of
speech data.
Diff between emu versions 4.0 dated 2008-08-07 and 4.1 dated 2009-09-08
emu-4.0/emu/R/trackdatacalc.S |only emu-4.0/emu/man/arith.trackdata.Rd |only emu-4.1/emu/DESCRIPTION | 36 - emu-4.1/emu/R/AAoptions.S | 213 +++++++ emu-4.1/emu/R/Firstlib.S | 103 +-- emu-4.1/emu/R/MethodEPG.S | 16 emu-4.1/emu/R/apply.S | 104 +-- emu-4.1/emu/R/bark.S | 52 - emu-4.1/emu/R/buildtrack.S | 90 +-- emu-4.1/emu/R/classplot.R | 74 +- emu-4.1/emu/R/dct.S | 82 +- emu-4.1/emu/R/dimtrackdata.S | 30 - emu-4.1/emu/R/dtime.S | 4 emu-4.1/emu/R/emu.track.S | 914 ++++++++++++++++++--------------- emu-4.1/emu/R/emusegs.S | 46 - emu-4.1/emu/R/end.emusegs.S | 12 emu-4.1/emu/R/generics.S |only emu-4.1/emu/R/makelab.S | 122 ++-- emu-4.1/emu/R/palate.S | 100 +-- emu-4.1/emu/R/plafit.S | 72 +- emu-4.1/emu/R/spectralclass.S | 418 +++++++-------- emu-4.1/emu/R/start.trackdata.S | 24 emu-4.1/emu/R/trackdata.class.S | 338 ++++++------ emu-4.1/emu/R/trackinfo.S | 19 emu-4.1/emu/R/tracktimes.S | 42 - emu-4.1/emu/R/trapply.R | 63 -- emu-4.1/emu/man/by.trackdata.Rd | 4 emu-4.1/emu/man/classplot.Rd | 28 - emu-4.1/emu/man/coutts.rms.Rd | 18 emu-4.1/emu/man/dbnorm.Rd | 94 +-- emu-4.1/emu/man/dim.trackdata.Rd | 6 emu-4.1/emu/man/dorfric.vl.Rd | 42 - emu-4.1/emu/man/dur.emusegs.Rd | 5 emu-4.1/emu/man/dur.trackdata.Rd |only emu-4.1/emu/man/emu.defaultpaths.Rd |only emu-4.1/emu/man/emu.query.Rd | 115 ++-- emu-4.1/emu/man/emu.track.Rd | 187 +++--- emu-4.1/emu/man/emu.version.Rd | 18 emu-4.1/emu/man/emulink.Rd |only emu-4.1/emu/man/fr.Rd | 18 emu-4.1/emu/man/fr.dft.Rd | 22 emu-4.1/emu/man/fr.l.Rd | 18 emu-4.1/emu/man/fr.sp.Rd | 18 emu-4.1/emu/man/frames.Rd |only emu-4.1/emu/man/freqtoint.Rd | 98 +-- emu-4.1/emu/man/is.spectral.Rd | 76 +- emu-4.1/emu/man/mu.colour.Rd | 162 ++--- emu-4.1/emu/man/rad.Rd | 70 +- emu-4.1/emu/man/segmentlist.Rd | 10 emu-4.1/emu/man/shift.Rd | 80 +- emu-4.1/emu/man/stops.Rd | 26 emu-4.1/emu/man/stops.bark.Rd | 32 - emu-4.1/emu/man/stops.dct.Rd | 18 emu-4.1/emu/man/stops.dft.Rd | 26 emu-4.1/emu/man/stops.l.Rd | 18 emu-4.1/emu/man/stops.sp.Rd | 24 emu-4.1/emu/man/stopsvow.Rd | 18 emu-4.1/emu/man/stopsvow.fm.Rd | 20 emu-4.1/emu/man/stopsvow.l.Rd | 18 emu-4.1/emu/man/trackdata.Rd | 41 + emu-4.1/emu/man/trackfreq.Rd | 82 +- emu-4.1/emu/man/trapply.Rd | 8 emu-4.1/emu/man/write.trackdata.Rd | 2 emu-4.1/emu/man/write.trackdata.get.Rd |only 64 files changed, 2361 insertions(+), 2035 deletions(-)
Author: Torsten Hothorn, Kurt Hornik, Mark A. van de Wiel and Achim
Zeileis
Title: Conditional Inference Procedures in a Permutation Test Framework
Description: Conditional inference procedures for the general
independence problem including two-sample, K-sample
(non-parametric ANOVA), correlation, censored, ordered and
multivariate problems.
Diff between coin versions 1.0-5 dated 2009-06-04 and 1.0-6 dated 2009-09-08
DESCRIPTION | 8 NEWS | 7 R/ExactDistributions.R | 2 inst/doc/LegoCondInf.pdf |binary inst/doc/MAXtest.pdf |binary inst/doc/coin.pdf |binary inst/doc/coin_implementation.pdf |binary inst/documentation/html/Classes_8c-source.html | 16 inst/documentation/html/Classes_8c.html | 18 inst/documentation/html/Classes_8c__incl.map | 8 inst/documentation/html/Classes_8c__incl.md5 | 2 inst/documentation/html/Classes_8c__incl.png |binary inst/documentation/html/Classes_8h-source.html | 16 inst/documentation/html/Classes_8h.html | 18 inst/documentation/html/Classes_8h__dep__incl.map | 8 inst/documentation/html/Classes_8h__dep__incl.md5 | 2 inst/documentation/html/Classes_8h__dep__incl.png |binary inst/documentation/html/Helpers_8c-source.html | 16 inst/documentation/html/Helpers_8c.html | 24 inst/documentation/html/Helpers_8c_140f9859faf864060c8a8ae129bc0190_cgraph.map | 12 inst/documentation/html/Helpers_8c_140f9859faf864060c8a8ae129bc0190_cgraph.md5 | 2 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tests/Examples/coin-Ex.Rout.save | 65 tests/bugfixes.R | 9 tests/bugfixes.Rout.save | 9 208 files changed, 3360 insertions(+), 2987 deletions(-)
Author: Sanford Weisberg
Diff between alr3 versions 1.1.10 dated 2009-08-20 and 1.1.11 dated 2009-09-08
Title: Methods and data to accompany Applied Linear Regression 3rd
edition
Description: This library is a companion to the textbook S. Weisberg
(2005), "Applied Linear Regression," 3rd edition, Wiley. It
includes all the data sets discussed in the book (except one),
and several few functions that are tailored to the methods
discussed in the book. Ver. 1.0.3 corrects bugs in (1) weights
for POD models; (2) use of 'subset' arguments with boot.case.
Ver. 1.0.4 corrects a few bugs with overparameterized models.
Ver. 1.0.5 changes one default argument. Ver 1.0.6 replaces the
pure.error.anova function so it prints nicer and works with
interactions. Ver 1.0.7 fixes a bug in residual.plots and adds
an additional argument and adds a new function alrweb to access
the website for the book in a browser. Ver 1.0.8 fixed a bug in
delta.method for generalized linear models. Ver 1.0.9 fixes a
bug with Yeo Johnson transformations. Ver 1.1.0 drops the
conf.intervals function in favor of the confint function in
stat, includes several minor bug fixes, and makes the package
fully compatible with version 2.6.0 of R. 1.1.2 corrects a bug
introduced in boot.case. Version 1.1.7 adds a namespace. Ver
1.1.8 fixes more bugs. Ver. 1.1.9 updated the delta.method to
work with a user-supplied estimate of the variance matrix.
1.1.10 removed a conflict with another package.
DESCRIPTION | 10 ++++++----
NAMESPACE | 1 +
R/alr3.R | 3 +++
man/mmps.Rd | 4 ++--
man/random.lin.comb.Rd | 4 ++--
5 files changed, 14 insertions(+), 8 deletions(-)
Author: Henrik Bengtsson
Diff between R.cache versions 0.1.7 dated 2008-03-07 and 0.1.8 dated 2009-09-08
Title: Fast and light-weight caching of objects
Description: Methods for memoization, that is, caching arbitrary R
objects in persistent memory. Objects can be loaded and saved
stratified on a set of hashing objects.
R.cache-0.1.7/R.cache/inst/HISTORY |only
R.cache-0.1.8/R.cache/DESCRIPTION | 32 ++++++++++++++++-----------
R.cache-0.1.8/R.cache/R/generateCache.R | 3 --
R.cache-0.1.8/R.cache/R/getCachePath.R | 3 --
R.cache-0.1.8/R.cache/R/readCacheHeader.R | 22 ++++++++++++++----
R.cache-0.1.8/R.cache/R/setCachePath.R | 3 --
R.cache-0.1.8/R.cache/inst/NEWS |only
R.cache-0.1.8/R.cache/man/R.cache-package.Rd | 2 -
R.cache-0.1.8/R.cache/man/generateCache.Rd | 3 --
R.cache-0.1.8/R.cache/man/getCachePath.Rd | 3 --
R.cache-0.1.8/R.cache/man/setCachePath.Rd | 3 --
11 files changed, 37 insertions(+), 37 deletions(-)
Author: Robin K. S. Hankin
Title: Very large numbers in R
Description: Handles very large numbers in R. Real numbers are held
using their natural logarithms, plus a logical flag indicating
sign. The package includes a vignette that gives a
step-by-step introduction to using S4 methods.
Diff between Brobdingnag versions 1.1-6 dated 2009-02-25 and 1.1-7 dated 2009-09-08
Brobdingnag-1.1-6/Brobdingnag/inst/doc/jss.bst |only Brobdingnag-1.1-6/Brobdingnag/inst/doc/jss.cls |only Brobdingnag-1.1-7/Brobdingnag/DESCRIPTION | 14 Brobdingnag-1.1-7/Brobdingnag/inst/doc/brob.pdf | 560 +++++++++---------- Brobdingnag-1.1-7/Brobdingnag/inst/doc/brobpaper.pdf | 8 Brobdingnag-1.1-7/Brobdingnag/man/as.numeric.Rd | 7 6 files changed, 294 insertions(+), 295 deletions(-)
Author: Achim Zeileis
Title: Dynamic Linear Regression
Description: Dynamic linear models and time series regression.
Diff between dynlm versions 0.2-2 dated 2009-02-05 and 0.2-3 dated 2009-09-08
COPYRIGHTS | 2 +- DESCRIPTION | 8 +++++--- NEWS | 6 ++++++ R/dynlm.R | 6 +++--- 4 files changed, 15 insertions(+), 7 deletions(-)
Author: Romain Francois
Title: Version of ant specific to R
Description: Version of the ant apache build tool, with a few R
specific tasks to ease use of ant within an R package
Diff between ant versions 0.0-5 dated 2009-09-07 and 0.0-6 dated 2009-09-08
DESCRIPTION | 8 ++++---- exec/ant.R | 10 ++++++++++ man/ant-package.Rd | 4 ++-- 3 files changed, 16 insertions(+), 6 deletions(-)
Author: Tao Huang
Title: Construct time delay gene regulatory network
Description: pkg{GeneReg} is an R package for inferring time delay gene
regulatory network using time course gene expression profiles.
The main idea of time delay linear model is to fit a linear
regression model using a set of putative regulators to estimate
the transcription pattern of a specific target gene.
Diff between GeneReg versions 1.0 dated 2009-06-07 and 1.1.0 dated 2009-09-08
GeneReg-1.0/GeneReg/data/expr.rda |only GeneReg-1.0/GeneReg/data/yeastract.rda |only GeneReg-1.0/GeneReg/man/expr.Rd |only GeneReg-1.0/GeneReg/man/yeastract.Rd |only GeneReg-1.1.0/GeneReg/DESCRIPTION | 12 + GeneReg-1.1.0/GeneReg/R/plot.GeneReg.R | 2 GeneReg-1.1.0/GeneReg/R/timedelay.lm.R | 124 +++++++++---------- GeneReg-1.1.0/GeneReg/R/timedelay.lm.batch.R | 14 +- GeneReg-1.1.0/GeneReg/R/timedelay.univariate.lm.R | 64 +++------ GeneReg-1.1.0/GeneReg/R/ts.bspline.R | 3 GeneReg-1.1.0/GeneReg/data/mut.expr.data.rda |only GeneReg-1.1.0/GeneReg/data/tf.list.rda |only GeneReg-1.1.0/GeneReg/data/wt.expr.data.rda |only GeneReg-1.1.0/GeneReg/man/GeneReg-package.Rd | 76 +++++------ GeneReg-1.1.0/GeneReg/man/mut.expr.data.Rd |only GeneReg-1.1.0/GeneReg/man/plot.GeneReg.Rd | 4 GeneReg-1.1.0/GeneReg/man/plot.Rd | 4 GeneReg-1.1.0/GeneReg/man/tf.list.Rd |only GeneReg-1.1.0/GeneReg/man/timedelay.lm.Rd | 18 +- GeneReg-1.1.0/GeneReg/man/timedelay.lm.batch.Rd | 8 - GeneReg-1.1.0/GeneReg/man/timedelay.univariate.lm.Rd | 11 - GeneReg-1.1.0/GeneReg/man/ts.bspline.Rd | 4 GeneReg-1.1.0/GeneReg/man/wt.expr.data.Rd |only 23 files changed, 161 insertions(+), 183 deletions(-)
Author: Andrew D. Martin
Diff between MCMCpack versions 1.0-3 dated 2009-07-30 and 1.0-4 dated 2009-09-08
Title: Markov chain Monte Carlo (MCMC) Package
Description: This package contains functions to perform Bayesian
inference using posterior simulation for a number of
statistical models. Most simulation is done in compiled C++
written in the Scythe Statistical Library Version 1.0.2. All
models return coda mcmc objects that can then be summarized
using the coda package. MCMCpack also contains some useful
utility functions, including some additional density functions
and pseudo-random number generators for statistical
distributions, a general purpose Metropolis sampling algorithm,
and tools for visualization.
DESCRIPTION | 8 ++++----
HISTORY | 5 ++++-
R/MCMCquantreg.R | 12 ++++++------
man/MCMCfactanal.Rd | 2 +-
man/MCMClogit.Rd | 3 +--
man/MCMCmixfactanal.Rd | 2 +-
man/MCMCordfactanal.Rd | 2 +-
man/MCMCpoisson.Rd | 2 +-
man/MCMCprobit.Rd | 2 +-
man/MCMCquantreg.Rd | 26 +++++++++++++-------------
src/MCMCfcds.h | 21 ++++++++-------------
src/MCMCquantreg.cc | 10 +++++-----
12 files changed, 46 insertions(+), 49 deletions(-)