Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann
Gneiting, University of Washington With contributions from
Bobby Yuen and Michael Polokowski
Title: Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts
from ensemble forecasts and weather observations.
Diff between ensembleBMA versions 4.3.1 dated 2009-09-07 and 4.3.2 dated 2009-09-09
CHANGELOG | 3 +-- DESCRIPTION | 8 ++++---- R/fitBMAgamma0.R | 23 ++++++++++++++++------- 3 files changed, 21 insertions(+), 13 deletions(-)
Author: Karsten Tabelow
Diff between dti versions 0.8-0 dated 2009-04-15 and 0.8-1 dated 2009-09-09
Title: DTI/DWI Analysis
Description: Diffusion Weighted Imaging is a Magnetic Resonance Imaging
modality, that measures diffusion of water in tissues like the
human brain. The package contains R-functions to process
diffusion-weighted data in the context of the diffusion tensor
model (DTI). This includes the calculation of anisotropy
measures and, most important, the implementation of our
structural adaptive smoothing algorithm as described in K.
Tabelow, J. Polzehl, V. Spokoiny, and H.U. Voss, Diffusion
Tensor Imaging: Structural Adaptive Smoothing, Neuroimage
39(4), 1763-1773 (2008).
DESCRIPTION | 10 +++++-----
inst/CITATION |only
2 files changed, 5 insertions(+), 5 deletions(-)
Author: Terry Therneau, original R port by Thomas Lumley
Title: Survival analysis, including penalised likelihood.
Description: survival analysis: descriptive statistics, two-sample
tests, parametric accelerated failure models, Cox model.
Delayed entry (truncation) allowed for all models; interval
censoring for parametric models. Case-cohort designs.
Diff between survival versions 2.35-6 dated 2009-09-07 and 2.35-7 dated 2009-09-09
DESCRIPTION | 8 +++----- Notes |only R/aareg.taper.S | 2 +- R/agexact.fit.S | 2 +- R/agreg.fit.S | 2 +- R/cluster.S | 2 +- R/coxpenal.df.S | 2 +- R/coxph.fit.S | 2 +- R/coxph.rvar.S | 2 +- R/coxph.wtest.S | 2 +- R/dsurvreg.S | 2 +- R/frailty.S | 2 +- R/frailty.brent.S | 2 +- R/frailty.controlaic.S | 2 +- R/frailty.controldf.S | 2 +- R/frailty.controlgam.S | 2 +- R/frailty.controlgauss.S | 2 +- R/frailty.gammacon.S | 2 +- R/is.na.coxph.penalty.S | 2 +- R/labels.survreg.S | 2 +- R/lines.aareg.S | 2 +- R/lines.survfit.coxph.S | 2 +- R/plot.aareg.S | 2 +- R/plot.survfit.S | 2 +- R/points.survfit.S | 2 +- R/predict.survreg.penal.S | 2 +- R/print.cox.zph.S | 2 +- R/print.coxph.S | 2 +- R/print.coxph.null.S | 2 +- R/print.coxph.penal.S | 2 +- R/print.ratetable.S | 2 +- R/print.summary.survfit.S | 2 +- R/print.summary.survreg.S | 2 +- R/print.survdiff.S | 2 +- R/print.survexp.S | 2 +- R/print.survreg.S | 2 +- R/print.survreg.penal.S | 2 +- R/residuals.survreg.penal.S | 2 +- R/ridge.S | 2 +- R/strata.S | 2 +- R/summary.ratetable.S | 2 +- R/summary.survreg.S | 2 +- R/survdiff.S | 2 +- R/survdiff.fit.S | 2 +- R/survexp.cfit.S | 2 +- R/survreg.old.S | 2 +- R/tcut.S | 2 +- R/untangle.specials.S | 2 +- man/coxph.Rd | 1 - src/agexact.c | 2 +- src/agscore.c | 2 +- src/agsurv1.c | 2 +- src/agsurv2.c | 2 +- src/chinv3.c | 2 +- src/cholesky3.c | 2 +- src/chsolve2.c | 2 +- src/chsolve3.c | 2 +- src/coxfit2.c | 2 +- src/coxmart.c | 2 +- src/coxph_wtest.c | 2 +- src/coxscho.c | 2 +- src/pyears2.c | 2 +- src/pystep.c | 2 +- src/survConcordance.c | 2 +- src/survdiff2.c | 2 +- src/survfit4.c | 2 +- 66 files changed, 66 insertions(+), 69 deletions(-)
Author: Torsten Hothorn
Title: Maximally Selected Rank Statistics
Description: Maximally selected rank statistics with several p-value
approximations.
Diff between maxstat versions 0.7-12 dated 2008-08-31 and 0.7-13 dated 2009-09-09
CHANGES | 6 +++++- DESCRIPTION | 15 +++++++++------ R/maxstat.R | 2 +- inst/doc/maxstat.pdf |binary man/maxstat.test.Rd | 2 +- 5 files changed, 16 insertions(+), 9 deletions(-)
Author: Fernando Martins
Title: Implementation of the "Flexible kernels for RBF network"
algorithm
Description: Flexible kernerl for radial basis function network
implementation.
Diff between frbf versions 0.9 dated 2009-09-03 and 1.0 dated 2009-09-09
DESCRIPTION | 8 ++++---- man/accuracy.Rd | 2 +- man/adjustKernelClusters.Rd | 2 +- man/buildClassification.Rd | 2 +- man/buildDistanceTable.Rd | 2 +- man/class_configuration.Rd | 1 + man/class_distance.Rd | 1 + man/class_kernels.Rd | 1 + man/classificationDistanceTable.Rd | 2 +- man/distances.Rd | 2 +- man/findLambda.Rd | 2 +- man/findS.Rd | 2 +- man/frbf.Rd | 4 ++-- man/initS.Rd | 2 +- man/predict.RemoraModel.Rd | 4 ++-- man/print.RemoraConfiguration.Rd | 2 +- man/print.RemoraKernels.Rd | 2 +- man/print.RemoraModel.Rd | 2 +- man/remora-package.Rd | 6 +++--- man/remora.classify.Rd | 2 +- man/remora.model.Rd | 2 +- man/remora.predict.Rd | 2 +- man/remoraConfiguration.Rd | 2 +- man/remoraDistance.Rd | 2 +- man/remoraKernels.Rd | 2 +- man/remoraKernelsKmeans.Rd | 2 +- man/remoraModel.Rd | 2 +- man/train.Rd | 2 +- 28 files changed, 35 insertions(+), 32 deletions(-)
Author: D.J.J. Walvoort, D.J. Brus, and J.J. de Gruijter
Title: Spatial Coverage Sampling And Random Sampling From Compact
Geographical Strata
Description: Spatial coverage sampling and random sampling from compact
geographical strata created by k-means.
Diff between spcosa versions 0.1-4 dated 2009-07-01 and 0.1-5 dated 2009-09-09
DESCRIPTION | 11 NEWS | 7 R/method_plot-CompactStratification.R | 4 demo/farmsumSCS.R | 2 inst/doc/spcosa.pdf | 2470 +++++++++++++----------- man/CompactStratification-class.Rd | 8 man/CompactStratificationEqualArea-class.Rd | 4 man/CompactStratificationPriorPoints-class.Rd | 6 man/SamplingPattern-class.Rd | 4 man/SamplingPatternCentroids-class.Rd | 2 man/SamplingPatternPriorPoints-class.Rd | 2 man/SamplingPatternPurposive-class.Rd | 2 man/SamplingPatternRandom-class.Rd | 2 man/SamplingPatternRandomComposite-class.Rd | 4 man/SamplingPatternRandomSamplingUnits-class.Rd | 2 man/stratify-methods.Rd | 8 tests/unitTests/runit_estimate.R | 2 17 files changed, 1452 insertions(+), 1088 deletions(-)
Author: John Verzani
Title: Toolkit implementation of gWidgets for tcltk package
Description: Port of gWidgets API to the tcltk package. Requires TK 8.5
or greater for the tile (ttk)widgets
http://www.tcl.tk/software/tcltk/8.5.tml. This is default on
Windows. Under linux, it must be installed. Under Mac OS X
(10.5) it must be upgraded. See www.tcl.tk to download source.
Under the Mac it compiles and installs cleanly.
Diff between gWidgetstcltk versions 0.0-26 dated 2009-02-10 and 0.0-30 dated 2009-09-09
ChangeLog | 299 ++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 17 +- NEWS | 30 +++ R/aaaGenerics.R | 39 +++- R/common.R | 77 +++++++++ R/gbutton.R | 83 +++------- R/gcheckbox.R | 21 ++ R/gcheckboxgroup.R | 13 + R/gdf.R | 23 ++ R/gdialogs.R | 22 +- R/gdroplist.R | 2 R/gedit.R | 52 +++++- R/gfile.R | 2 R/gframe.R | 13 + R/ggroup.R | 7 R/gimage.R | 139 ++++++++++------- R/glabel.R | 17 -- R/glayout.R | 2 R/gpanedgroup.R | 2 R/gradio.R | 16 ++ R/gslider.R | 46 +++++ R/gspinbutton.R | 39 ++++ R/gtable.R | 83 +++++----- R/gtext.R | 9 - R/gtoolbar.R | 13 - R/tcltkFuns.R | 2 R/zzz.R | 2 TODO.txt | 58 +++++++ man/gWidgetstcltk-undocumented.Rd | 8 + 29 files changed, 909 insertions(+), 227 deletions(-)
Author: John Verzani. Based on the iwidgets code of Simon Urbanek and
suggestions by Simon Urbanek, Philippe Grosjean and Michael
Lawrence
Title: gWidgets API for building toolkit-independent, interactive GUIs
Description: gWidgets provides a toolkit-independent API for building
interactive GUIs. Atleast one of the gWidgetsXXX packages, such
as gWidgetstcltk, needs to be installed. Some icons are on loan
from the scigraphica project
http://scigraphica.sourceforge.net.
Diff between gWidgets versions 0.0-36 dated 2009-09-09 and 0.0-37 dated 2009-09-09
ChangeLog | 5 DESCRIPTION | 6 NEWS | 4 inst/doc/addingToolkit.pdf |binary inst/doc/gWidgets.pdf | 694 ++++++++++++++++++++++----------------------- inst/tests/ex-containers.R | 2 inst/tests/ex-gdialogs.R | 5 7 files changed, 364 insertions(+), 352 deletions(-)
Author: Daniel Adler
Diff between rgl versions 0.84 dated 2009-03-15 and 0.87 dated 2009-09-09
Title: 3D visualization device system (OpenGL)
Description: 3D visualization device (OpenGL)
rgl-0.84/rgl/src/math.cpp |only
rgl-0.84/rgl/src/math.h |only
rgl-0.87/rgl/DESCRIPTION | 11 ++++++-----
rgl-0.87/rgl/NAMESPACE | 6 ++++--
rgl-0.87/rgl/R/addNormals.mesh3d.R |only
rgl-0.87/rgl/R/cylinder3d.R |only
rgl-0.87/rgl/R/enum.R | 2 +-
rgl-0.87/rgl/R/material.R | 8 +++++---
rgl-0.87/rgl/R/scene.R | 9 ++++-----
rgl-0.87/rgl/R/shapelist3d.R | 11 ++++++++---
rgl-0.87/rgl/R/zzz.R | 4 ++--
rgl-0.87/rgl/inst/NEWS | 20 ++++++++++++++++++--
rgl-0.87/rgl/man/addNormals.Rd |only
rgl-0.87/rgl/man/cylinder3d.Rd |only
rgl-0.87/rgl/man/ellipse3d.Rd | 2 +-
rgl-0.87/rgl/man/material.Rd | 2 +-
rgl-0.87/rgl/man/mesh3d.Rd | 3 ++-
rgl-0.87/rgl/man/par3dinterp.Rd | 2 +-
rgl-0.87/rgl/man/r3d.Rd | 2 +-
rgl-0.87/rgl/man/rgl.bringtotop.Rd | 4 +++-
rgl-0.87/rgl/man/texts.Rd | 2 +-
rgl-0.87/rgl/man/viewpoint.Rd | 6 +++++-
rgl-0.87/rgl/src/BBoxDeco.hpp | 2 +-
rgl-0.87/rgl/src/Background.cpp | 25 ++++++++++++++++++-------
rgl-0.87/rgl/src/Color.cpp | 1 +
rgl-0.87/rgl/src/Light.hpp | 2 +-
rgl-0.87/rgl/src/RenderContext.hpp | 2 +-
rgl-0.87/rgl/src/String.cpp | 1 +
rgl-0.87/rgl/src/Texture.cpp | 1 +
rgl-0.87/rgl/src/Viewpoint.cpp | 8 ++++++--
rgl-0.87/rgl/src/geom.cpp | 14 +++++++++++---
rgl-0.87/rgl/src/geom.hpp | 4 +++-
rgl-0.87/rgl/src/par3d.cpp | 2 +-
rgl-0.87/rgl/src/pixmap.cpp | 3 ++-
rgl-0.87/rgl/src/rglmath.cpp |only
rgl-0.87/rgl/src/rglmath.h |only
rgl-0.87/rgl/src/rglview.cpp | 4 ++--
rgl-0.87/rgl/src/scene.cpp | 4 ++--
rgl-0.87/rgl/src/x11gui.cpp | 7 ++++++-
39 files changed, 120 insertions(+), 54 deletions(-)
Author: Michael Lawrence, John Verzani
Title: Toolkit implementation of gWidgets for RGtk2
Description: Port of gWidgets API to RGtk2
Diff between gWidgetsRGtk2 versions 0.0-53 dated 2009-08-01 and 0.0-54 dated 2009-09-09
ChangeLog | 13 +++++++++++ DESCRIPTION | 6 ++--- NEWS | 9 +++++++ R/gfile.R | 20 ++++++++++------- R/gslider.R | 43 ++++++++++++++++++++++++++++++++++++++ R/gspinbutton.R | 40 +++++++++++++++++++++++++++++++++++ TODO.txt |only man/gWidgetsRGtk2-undocumented.Rd | 4 +++ svn-commit.2.tmp |only svn-commit.tmp |only 10 files changed, 124 insertions(+), 11 deletions(-)
Author: John Verzani. Based on the iwidgets code of Simon Urbanek and
suggestions by Simon Urbanek, Philippe Grosjean and Michael
Lawrence
Title: gWidgets API for building toolkit-independent, interactive GUIs
Description: gWidgets provides a toolkit-independent API for building
interactive GUIs. Atleast one of the gWidgetsXXX packages, such
as gWidgetstcltk, needs to be installed. Some icons are on loan
from the scigraphica project
http://scigraphica.sourceforge.net.
Diff between gWidgets versions 0.0-35 dated 2009-03-13 and 0.0-36 dated 2009-09-09
gWidgets-0.0-35/gWidgets/inst/doc/gWidgets.pdf.3.mine |only gWidgets-0.0-35/gWidgets/inst/doc/gWidgets.pdf.mine |only gWidgets-0.0-36/gWidgets/DESCRIPTION | 6 gWidgets-0.0-36/gWidgets/NEWS |only gWidgets-0.0-36/gWidgets/inst/doc/addingToolkit.pdf |binary gWidgets-0.0-36/gWidgets/inst/doc/draft.R |only gWidgets-0.0-36/gWidgets/inst/doc/gWidgets.R |only gWidgets-0.0-36/gWidgets/inst/doc/gWidgets.pdf | 5408 +++++----- gWidgets-0.0-36/gWidgets/inst/doc/gWidgets.toc |only gWidgets-0.0-36/gWidgets/inst/doc/gWidgetsImplementatations.ods |only gWidgets-0.0-36/gWidgets/inst/doc/gWidgetsImplementatations.xls |only gWidgets-0.0-36/gWidgets/inst/doc/testit.R |only gWidgets-0.0-36/gWidgets/inst/tests/test-gbutton.R |only gWidgets-0.0-36/gWidgets/inst/tests/test-gcalendar.R |only gWidgets-0.0-36/gWidgets/inst/tests/test-gcheckbox.R |only gWidgets-0.0-36/gWidgets/inst/tests/test-gcheckboxgroup.R |only gWidgets-0.0-36/gWidgets/inst/tests/test-gcombobox.R |only gWidgets-0.0-36/gWidgets/inst/tests/test-gedit.R |only gWidgets-0.0-36/gWidgets/inst/tests/test-gimage.R |only gWidgets-0.0-36/gWidgets/inst/tests/test-glabel.R |only gWidgets-0.0-36/gWidgets/inst/tests/test-gradio.R |only gWidgets-0.0-36/gWidgets/man/gWidgets-handlers.Rd | 2 gWidgets-0.0-36/gWidgets/man/gformlayout.Rd | 2 gWidgets-0.0-36/gWidgets/man/ggenericwidget.Rd | 2 gWidgets-0.0-36/gWidgets/man/gslider.Rd | 5 25 files changed, 2862 insertions(+), 2563 deletions(-)
Author: Michael A. Lawrence
Title: Easy analysis and visualization of factorial experiments.
Description: This package facilitates easy analysis of factorial
experiments, including purely within-Ss designs (a.k.a.
"repeated measures"), purely between-Ss designs, and mixed
within-and-between-Ss designs. The functions in this package
provide easy access to descriptive statistics, ANOVA,
permutation tests, and visualization of results.
Diff between ez versions 1.3 dated 2009-05-20 and 1.4 dated 2009-09-09
ez-1.3/ez/R/ezLev.R |only ez-1.3/ez/man/ezLev.Rd |only ez-1.4/ez/CHANGES | 10 ++++++++++ ez-1.4/ez/DESCRIPTION | 12 ++++++------ ez-1.4/ez/NAMESPACE | 2 +- ez-1.4/ez/R/ez-internal.R | 39 +++++++++++++++++++++++---------------- ez-1.4/ez/R/ezANOVA.R | 6 ++++++ ez-1.4/ez/R/ezPlot.R | 19 ++++++++++++++++++- ez-1.4/ez/man/ez-package.Rd | 3 +-- ez-1.4/ez/man/ezANOVA.Rd | 2 +- ez-1.4/ez/man/ezPlot.Rd | 27 ++++++++++++++++++++++++++- ez-1.4/ez/man/ezStats.Rd | 2 +- 12 files changed, 93 insertions(+), 29 deletions(-)
Author: Georg Luebeck
Diff between Bhat versions 0.9-08 dated 2006-02-08 and 0.9-09 dated 2009-09-09
Title: General likelihood exploration
Description: Functions for MLE, MCMC, CIs (originally in Fortran)
.DS_Store |only
DESCRIPTION | 9 +++++----
2 files changed, 5 insertions(+), 4 deletions(-)