Author: Jeremy Stephens
Diff between yaml versions 1.0.2 dated 2009-08-26 and 1.1.0 dated 2009-09-12
Title: Methods to convert R to YAML and back
Description: This package implements the Syck YAML parser by _why
(formerly http://www.whytheluckystiff.net/syck) for R. There
are also methods to convert R objects into YAML.
COPYING | 2
DESCRIPTION | 8 -
NAMESPACE | 2
R/as.yaml.R | 82 +++++++++++++----
R/yaml.load_file.R |only
TODO | 3
inst/CHANGELOG | 5 +
man/as.yaml.Rd | 15 ++-
man/yaml-package.Rd | 14 +-
man/yaml.load.Rd | 26 +++--
src/yaml.c | 210 +++++++++++++++++++++++++++++---------------
tests/as_yaml_test.R | 37 +++++++
tests/test_helper.r | 14 +-
tests/test_runner.r | 3
tests/yaml_load_file_test.R |only
tests/yaml_load_test.R | 16 +++
16 files changed, 318 insertions(+), 119 deletions(-)
Author: Nicolas Turenne
Diff between svcR versions 1.6.1 dated 2009-09-10 and 1.6.2 dated 2009-09-12
Title: svcR package
Description: svcR implements a support vector machine technique for
clustering It includes choice between three kinds of kernel.
Original cluster labeling and export of clusters. Format of
data require 3 files: matrix, attributes, variables.
DESCRIPTION | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
Author: Simon Wood
Diff between mgcv versions 1.5-5 dated 2009-05-15 and 1.5-6 dated 2009-09-12
Title: GAMs with GCV/AIC/REML smoothness estimation and GAMMs by PQL
Description: Routines for GAMs and other generalized ridge regression
with multiple smoothing parameter selection by GCV, REML or
UBRE/AIC. Also GAMMs by REML or PQL. Includes a gam() function.
DESCRIPTION | 6 -
R/gam.fit3.r | 295 ++++++++++++++++++++++++++++++++++++++++++++++++-
R/gamm.r | 251 ++----------------------------------------
R/mgcv.r | 249 ++++++++++++++++++++++++++++--------------
R/smooth.r | 307 ++++++++++++++++-----------------------------------
changeLog | 79 ++++++++++++-
man/gam.Rd | 72 ++++++++++--
man/gam.control.Rd | 8 -
man/gamObject.Rd | 3
man/gamm.Rd | 18 ++-
man/magic.Rd | 4
man/predict.gam.Rd | 45 +++++++
man/smoothCon.Rd | 18 ++-
man/te.Rd | 10 +
po/R-de.po |only
po/R-mgcv.pot | 314 +++++++++++++++++++++++++++++++++--------------------
po/de.po |only
po/mgcv.pot | 25 ++--
18 files changed, 1006 insertions(+), 698 deletions(-)
Author: Regis Pouillot
Diff between mc2d versions 0.1-5 dated 2009-04-14 and 0.1-6 dated 2009-09-12
Title: Tools for Two-Dimensional Monte-Carlo Simulations
Description: Various distributions and utilities to ease the use of R
to build and study Two-Dimensional Monte-Carlo simulations
DESCRIPTION | 11 +--
R/mccontrol.R | 2
R/mcprobtree.R | 147 +++++++++++++++++++++++++---------------------
R/pert.R | 8 +-
inst/NEWS |only
inst/doc/docmcEnglish.pdf |binary
man/mcprobtree.Rd | 68 ++++++++++++---------
7 files changed, 132 insertions(+), 104 deletions(-)
Author: Trevor Hastie
Title: Generalized Additive Models
Description: Functions for fitting and working with generalized
additive models, as described in chapter 7 of "Statistical
Models in S" (Chambers and Hastie (eds), 1991), and
"Generalized Additive Models" (Hastie and Tibshirani, 1990).
Diff between gam versions 1.0 dated 2008-05-29 and 1.0.1 dated 2009-09-12
DESCRIPTION | 28 +++++++++++++++------------- man/gam.Rd | 2 +- 2 files changed, 16 insertions(+), 14 deletions(-)
Author: Carsten F. Dormann and Bernd Gruber, with additional code from
Mariano Devoto, Jochen Fruend, Jose Iriondo and Diego Vazquez,
also based on C-code developed by Nils Bluethgen and by Miguel
Rodriguez-Girones.
Title: Visualising bipartite networks and calculating some ecological
indices.
Description: Bipartite provides functions to viualise webs and
calculate a series of indices commonly used to describe pattern
in ecological webs. It focusses on webs consisting of only two
trophic levels, e.g. pollination webs or predator-prey-webs.
Visualisation is important to get an idea of what we are
actually looking at, while the indices summarise different
aspects of the webs topology.
Diff between bipartite versions 1.00 dated 2009-08-06 and 1.02 dated 2009-09-12
bipartite-1.00/bipartite/matrix.cpp |only bipartite-1.02/bipartite/DESCRIPTION | 8 bipartite-1.02/bipartite/R/dfun.R | 182 ++++++------------- bipartite-1.02/bipartite/R/discrepancy.r | 6 bipartite-1.02/bipartite/R/nested.r |only bipartite-1.02/bipartite/R/networklevel.R | 4 bipartite-1.02/bipartite/R/plotweb.R | 203 +++++++++++++--------- bipartite-1.02/bipartite/R/specieslevel.R | 6 bipartite-1.02/bipartite/man/bipartite-package.Rd | 12 + bipartite-1.02/bipartite/man/compart.Rd | 11 + bipartite-1.02/bipartite/man/dfun.Rd | 11 - bipartite-1.02/bipartite/man/nested.Rd |only bipartite-1.02/bipartite/man/plotweb.Rd | 102 ++++++++--- bipartite-1.02/bipartite/man/specieslevel.Rd | 6 14 files changed, 304 insertions(+), 247 deletions(-)
Author: Eric M. Thompson
Diff between Rsac versions 0.1-7 dated 2009-01-26 and 0.1-8 dated 2009-09-12
Title: Seismic analysis tools in R
Description: The functions in this package are mostly designed to
reproduce the most commonly used functions in the LLNL software
Seismic Analysis Code (SAC, http://www.llnl.gov/sac/). This
includes reading standard binary SAC (and also SEGY) files,
plotting arrays of seismic recordings (the "SAC" plotting
style), filtering (highpass, lowpass, and bandpass IIR
filters), integration, and differentiation.
Rsac-0.1-7/Rsac/R/plot.rsac.R |only
Rsac-0.1-8/Rsac/DESCRIPTION | 22 ++++++++++++----------
Rsac-0.1-8/Rsac/R/GET.seis.R | 19 +++----------------
Rsac-0.1-8/Rsac/R/rsac.methods.R |only
Rsac-0.1-8/Rsac/R/rsac.skeleton.R |only
Rsac-0.1-8/Rsac/R/spect.R | 33 ++++++++++++++++++++++++---------
Rsac-0.1-8/Rsac/inst |only
Rsac-0.1-8/Rsac/man/GET.seis.Rd | 13 +++++--------
Rsac-0.1-8/Rsac/man/NumCalculus.Rd | 4 ++--
Rsac-0.1-8/Rsac/man/fstart.Rd | 2 +-
Rsac-0.1-8/Rsac/man/gcp.Rd | 6 ++----
Rsac-0.1-8/Rsac/man/getunits.Rd | 12 ++++++++----
Rsac-0.1-8/Rsac/man/iir.Rd | 4 ++--
Rsac-0.1-8/Rsac/man/julian.Rd | 12 ++++--------
Rsac-0.1-8/Rsac/man/mul.Rd | 4 ++--
Rsac-0.1-8/Rsac/man/parseFN2STA.Rd | 5 +----
Rsac-0.1-8/Rsac/man/rotate.Rd | 4 ++--
Rsac-0.1-8/Rsac/man/rsac.Rd | 7 +++++--
Rsac-0.1-8/Rsac/man/rsac.methods.Rd | 6 ++++--
Rsac-0.1-8/Rsac/man/rsac.skeleton.Rd |only
Rsac-0.1-8/Rsac/man/rtrend.Rd | 20 ++++++++++++++++++--
Rsac-0.1-8/Rsac/man/section.Rd | 4 ++--
Rsac-0.1-8/Rsac/man/spect.Rd | 11 ++++++-----
Rsac-0.1-8/Rsac/man/srosa.Rd | 2 +-
Rsac-0.1-8/Rsac/man/sumatra.Rd | 2 +-
Rsac-0.1-8/Rsac/man/sync.Rd | 6 ++----
Rsac-0.1-8/Rsac/man/taper.Rd | 15 ++++++++++++---
27 files changed, 119 insertions(+), 94 deletions(-)
Author: Klaus Nordhausen, Seija Sirkia, Hannu Oja, David E. Tyler
Title: Tools for Multivariate Nonparametrics
Description: Tools for multivariate nonparametrics, as location tests
based on marginal ranks, spatial median and spatial signs
computation, Hotelling's T-test, estimates of shape
Diff between ICSNP versions 1.0-4 dated 2009-05-27 and 1.0-5 dated 2009-09-12
DESCRIPTION | 8 ++++---- R/ind.ctest.R | 5 +++-- R/rank.ictest.R | 2 +- R/spatial.median.R | 1 - R/spatial.median.step.R | 15 ++++++++++----- inst/CHANGES | 6 ++++++ man/ICSNP-package.Rd | 4 ++-- man/rank.ictest.Rd | 2 +- 8 files changed, 27 insertions(+), 16 deletions(-)
Author: Ulrike Groemping
Title: Full factorials, orthogonal arrays and base utilities for DoE
packages
Description: This package creates full factorial experimental designs
and designs based on orthogonal arrays for (industrial)
experiments. Additionally, it provides some utility functions
used also by other DoE packages.
Diff between DoE.base versions 0.9 dated 2009-09-07 and 0.9-1 dated 2009-09-12
DESCRIPTION | 10 ++-- NAMESPACE | 6 +- R/SN.R |only R/printandsummary.design.R | 93 +++++++++++++++++++++++++++++++++----------- inst/NEWS | 6 ++ man/SN.Rd |only man/class-design-methods.Rd | 78 ++++++++++++++++++++++++++++++++++++ 7 files changed, 162 insertions(+), 31 deletions(-)