Author: Tore Opsahl
Title: tnet: Software for Analysis of Weighted, Two-mode, and
Longitudinal networks
Description: R package to analyse weighted, two-mode, and longitudinal
networks.
Diff between tnet versions 0.1.1 dated 2009-09-07 and 0.1.2 dated 2009-09-18
DESCRIPTION | 8 +- R/weighted_richclub_w.R | 123 +++++++++++++++++---------------------------- man/as.tnet.Rd | 1 man/random_values.Rd | 1 man/rg_tm.Rd | 2 man/tnet-package.Rd | 1 man/weighted_richclub_w.Rd | 2 7 files changed, 53 insertions(+), 85 deletions(-)
Author: Thomas Lumley
Title: analysis of complex survey samples
Description: Summary statistics, generalised linear models, Cox models,
loglinear models, and general maximum pseudolikelihood
estimation for multistage stratified, cluster-sampled,
unequally weighted survey samples. Variances by Taylor series
linearisation or replicate weights. Post-stratification,
calibration, and raking. Two-phase designs. Graphics.
Predictive margins by direct standardization. PPS sampling
without replacement.
Diff between survey versions 3.16 dated 2009-06-02 and 3.17 dated 2009-09-18
DESCRIPTION | 8 ++-- NAMESPACE | 4 +- R/count.R |only R/multistage.R | 10 ++--- R/olr.R | 29 ++++++++++---- R/pps.R | 10 ++--- R/regtest.R | 54 +++++++++++++++++++++++++-- R/survey.R | 42 ++++++++++++++++++++- R/surveyby.R | 13 ++++-- R/surveygraph.R | 10 ++--- R/surveyrep.R | 71 +++++++++++++++++++++++++---------- R/svymi.R | 34 ++++++++++++++++- THANKS | 4 +- inst/NEWS | 35 +++++++++++++++++ inst/README | 2 - inst/doc/domain.pdf |binary inst/doc/epi.pdf |binary inst/doc/phase1.Rnw | 6 +-- inst/doc/phase1.pdf |binary inst/doc/pps.Rnw | 10 ++--- inst/doc/pps.pdf |binary inst/doc/survey.pdf |binary man/pchisqsum.Rd | 2 - man/regTermTest.Rd | 26 ++++++++----- man/surveyoptions.Rd | 12 ++++++ man/svy.varcoef.Rd | 4 -- man/svyby.Rd | 26 +++++++++++-- man/svydesign.Rd | 4 +- man/svyglm.Rd | 8 +++- man/svyolr.Rd | 7 ++- man/svyplot.Rd | 3 + man/with.svyimputationList.Rd | 7 ++- tests/DBIcheck.R | 3 + tests/DBIcheck.Rout.save | 19 +++++++-- tests/api.Rout.save | 20 +++++++--- tests/check.Rout.save | 12 +++++- tests/kalton.Rout.save | 14 +++++-- tests/lonely.psu.Rout.save | 10 ++--- tests/multistage.Rout.save | 17 ++++++-- tests/nwts-cch.Rout.save | 8 ++-- tests/pps.R | 26 +++++++++++++ tests/pps.Rout.save | 84 +++++++++++++++++++++++++++++++++++++++++- tests/rakecheck.Rout.save | 16 ++++++-- tests/regpredict.Rout.save | 12 +++++- tests/twophase.Rout.save | 4 +- 45 files changed, 550 insertions(+), 136 deletions(-)
Author: Barry Rowlingson
Diff between splancs versions 2.01-24 dated 2008-08-01 and 2.01-25 dated 2009-09-18
Title: Spatial and Space-Time Point Pattern Analysis
Description: Spatial and Space-Time Point Pattern Analysis Functions
ChangeLog | 12 ++++++++++++
DESCRIPTION | 16 +++++++++-------
inst/ChangeLog | 12 ++++++++++++
3 files changed, 33 insertions(+), 7 deletions(-)
Author: Tuomas Rajala
Title: Segregation measures for multitype spatial point patterns
Description: Summaries for measuring segregation/mingling in multitype
spatial point patterns with graph based neighbourhood
description. Included indices: Mingling, Shannon, Simpson (also
the non-spatial) Included functionals: Mingling, Shannon,
Simpson, ISAR. Included neighbourhoods: Geometric, k-nearest
neighbours, Gabriel, Delauney.
Diff between spatialsegregation versions 2.05 dated 2009-06-26 and 2.10 dated 2009-09-18
.cproject |only .project | 67 +++++++++++++ DESCRIPTION | 12 +- R/fclass.R | 87 ++++++++--------- R/fun.R | 124 +++++++++++++++++------- R/isar.R | 158 +++++++++++++++++++++---------- R/isar_old.R |only R/mingling.R | 121 +++++++++++++++++------ R/mingling_old.R |only R/modifiers.R | 2 R/shannon.R | 83 ++++++++++------ R/shannon_old.R |only R/simpson.R | 70 ++++++++++--- R/simpson_old.R |only change.log | 10 + man/spatialsegregation-ISAR.Rd | 36 +++---- man/spatialsegregation-helpers.Rd | 6 - man/spatialsegregation-mingling.Rd | 32 +++--- man/spatialsegregation-package.Rd | 22 ++-- man/spatialsegregation-segregationFun.Rd | 74 ++++++-------- man/spatialsegregation-shannon.Rd | 26 ++--- man/spatialsegregation-simpson.Rd | 25 ++-- src/isar.cpp | 54 ++++++++++ src/isar.h | 2 24 files changed, 695 insertions(+), 316 deletions(-)
More information about spatialsegregation at CRAN
Permanent link
Author: Tuomas Rajala
Title: Graphs for spatial point patterns
Description: Graphs, graph visualization and graph component
calculations, ment to be used as a tool in spatial point
pattern analysis. See package 'spatstat' for more info about
spatial point patterns.
Diff between spatgraphs versions 2.1 dated 2008-11-13 and 2.27 dated 2009-09-18
spatgraphs-2.1/spatgraphs/R/graphtodxf.R |only spatgraphs-2.1/spatgraphs/R/sumfuns.R |only spatgraphs-2.27/spatgraphs/.Rbuildindex.12151 |only spatgraphs-2.27/spatgraphs/DESCRIPTION | 18 ++-- spatgraphs-2.27/spatgraphs/R/adjacency.R | 10 +- spatgraphs-2.27/spatgraphs/R/class.R | 34 +++++-- spatgraphs-2.27/spatgraphs/R/clustering.R | 13 +- spatgraphs-2.27/spatgraphs/R/edgelengths.R |only spatgraphs-2.27/spatgraphs/R/mstoperations.R | 30 ++++-- spatgraphs-2.27/spatgraphs/R/plot.R | 63 +++++++++----- spatgraphs-2.27/spatgraphs/R/runif3d.R | 11 +- spatgraphs-2.27/spatgraphs/R/sg2dxf.R |only spatgraphs-2.27/spatgraphs/R/sg2igraph.R |only spatgraphs-2.27/spatgraphs/R/shortestPath.R | 15 ++- spatgraphs-2.27/spatgraphs/R/spatgraph.R | 52 ++++++++--- spatgraphs-2.27/spatgraphs/ToAdd.TXT0 | 4 spatgraphs-2.27/spatgraphs/change.log | 25 +++++ spatgraphs-2.27/spatgraphs/man/spatgraphs-cut.sg.Rd | 4 spatgraphs-2.27/spatgraphs/man/spatgraphs-legacy.Rd |only spatgraphs-2.27/spatgraphs/man/spatgraphs-mailer.Rd | 5 - spatgraphs-2.27/spatgraphs/man/spatgraphs-other.Rd |only spatgraphs-2.27/spatgraphs/man/spatgraphs-package.Rd | 9 -- spatgraphs-2.27/spatgraphs/man/spatgraphs-plot.sg.Rd | 2 spatgraphs-2.27/spatgraphs/man/spatgraphs-print.sg.Rd | 2 spatgraphs-2.27/spatgraphs/man/spatgraphs-sg.Rd | 7 - spatgraphs-2.27/spatgraphs/man/spatgraphs-sg2igraph.Rd |only spatgraphs-2.27/spatgraphs/man/spatgraphs-shake.Rd | 1 spatgraphs-2.27/spatgraphs/man/spatgraphs-shortestPath.Rd | 6 - spatgraphs-2.27/spatgraphs/man/spatgraphs-spatcluster.Rd | 2 spatgraphs-2.27/spatgraphs/man/spatgraphs-spatgraph.Rd | 14 ++- spatgraphs-2.27/spatgraphs/src/Graph.cpp | 34 ++++--- spatgraphs-2.27/spatgraphs/src/Graph.h | 2 spatgraphs-2.27/spatgraphs/src/Pp.h | 1 spatgraphs-2.27/spatgraphs/src/cutprune.cpp | 7 + spatgraphs-2.27/spatgraphs/src/dists.cpp | 20 ++++ spatgraphs-2.27/spatgraphs/src/dists.h | 1 spatgraphs-2.27/spatgraphs/src/rgraph.cpp | 27 +++--- 37 files changed, 271 insertions(+), 148 deletions(-)
Author: Reinhard Furrer
Title: SPArse Matrix
Description: Set of function for sparse matrix algebra. Differences
with SparseM/Matrix are: (1) we only support (essentially) one
sparse matrix format, (2) based on transparent and simple
structure(s), (3) tailored for MCMC calculations within GMRF.
(4) S3 and S4 like-"compatible" ... and it is fast.
Diff between spam versions 0.15-4 dated 2009-04-15 and 0.15-5 dated 2009-09-18
ChangeLog | 2 DESCRIPTION | 12 +-- NAMESPACE | 10 ++ R/apply.R |only R/definitions.R | 53 ++++++++++++-- R/dist.R | 45 +++++++----- R/foreign.R | 6 + R/helper.R |only R/kronecker.R | 6 + R/plotting.R | 6 + R/profile.R | 13 ++- R/spam_solve.R | 12 ++- R/xybind.R | 6 + demo/article-jss.R | 18 ++--- demo/cholesky.R | 6 + demo/spam.R | 6 + demo/timing.R | 6 + inst/NEWS | 29 ++++++++ man/SPAM.Rd | 6 + man/UScounties.Rd | 6 + man/USprecip.Rd | 6 + man/adiag.Rd |only man/allequal.Rd | 6 + man/apply.Rd |only man/chol.Rd | 6 + man/complexity.Rd |only man/det.Rd | 6 + man/diag.Rd | 6 + man/dim.Rd | 6 + man/display.Rd | 6 + man/foreign.Rd | 6 + man/history.spam.Rd | 6 + man/image.Rd | 6 + man/import.Rd | 6 + man/isSymmetric.Rd | 6 + man/kronecker.Rd | 6 + man/lu.tri.Rd | 6 + man/math.Rd | 6 + man/math2.Rd | 6 + man/nearestdist.Rd | 30 ++++---- man/operations.Rd | 8 +- man/options.Rd | 6 + man/ordering.Rd | 6 + man/powerboost.Rd | 11 +-- man/print.Rd | 6 + man/rmvnorm.Rd |only man/solve.Rd | 14 ++- man/spam-class.Rd | 6 + man/spam.chol.NgPeyton-class.Rd | 6 + man/spam.creation.Rd | 6 + man/spam.internal.Rd | 6 + man/summary.Rd | 6 + man/todo.Rd | 6 + man/triplet.Rd | 6 + man/version.Rd | 6 + man/xybind.Rd | 6 + src/dist.f | 132 ++++++++++++------------------------- src/spamown.f | 59 +++++++++++++++- tests/demo_article-jss.R | 20 +++-- tests/demo_article-jss.Rout.save | 14 ++- tests/demo_cholesky.R | 6 + tests/demo_cholesky.Rout.save | 14 ++- tests/demo_spam.R | 6 + tests/demo_spam.Rout.save | 14 ++- tests/demo_timing.R | 6 + tests/demo_timing.Rout.save | 14 ++- tests/displays.R | 6 + tests/displays.Rout.save | 14 ++- tests/dist.R | 139 +++++++++++++++------------------------ tests/dist.Rout.save | 19 ++--- tests/foreign.R | 6 + tests/foreign.Rout.save | 5 - tests/kronecker.R | 6 + tests/kronecker.Rout.save | 14 ++- tests/overall.R | 7 + tests/overall.Rout.save | 14 ++- tests/solve.R | 6 + tests/solve.Rout.save | 14 ++- tests/xybind.R | 6 + tests/xybind.Rout.save | 14 ++- 80 files changed, 620 insertions(+), 414 deletions(-)
Author: Edzer J. Pebesma
Diff between sp versions 0.9-43 dated 2009-07-19 and 0.9-44 dated 2009-09-18
Title: classes and methods for spatial data
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location
information resides, for 2D or 3D data. Utility functions are
provided, e.g. for plotting data as maps, spatial selection, as
well as methods for retrieving coordinates, for subsetting,
print, summary, etc.
ChangeLog | 15
DESCRIPTION | 8
inst/ChangeLog | 15
inst/doc/sp.Rnw | 33
inst/doc/sp.pdf | 1690 ++++++++++++++++++------------------
man/SpatialPointsDataFrame-class.Rd | 2
man/spplot.Rd | 2
7 files changed, 937 insertions(+), 828 deletions(-)
Author: Delphine Charif and Jean R. Lobry and Anamaria Necsulea and
Leonor Palmeira and Simon Penel
Title: Biological Sequences Retrieval and Analysis
Description: Exploratory data analysis and data visualization for
biological sequence (DNA and protein) data. Include also
utilities for sequence data management under the ACNUC system.
Diff between seqinr versions 2.0-4 dated 2009-07-01 and 2.0-5 dated 2009-09-18
DESCRIPTION | 10 ++--- R/circle.R |only R/col2alpha.R |only R/move.R |only R/plotPanels.R |only R/swap.R |only inst/abif/NGM_Bins.txt |only inst/abif/NGM_Pa.txt |only inst/abif/samplefsa2ps.fsa |only inst/doc/src/appendix/releasenotes.rnw | 26 ++++++++++++++ inst/doc/src/appendix/releasenotes.tex | 58 +++++++++++++++++++++++++++++++-- inst/doc/src/config/book.bib | 10 +++++ man/circle.Rd |only man/col2alpha.Rd |only man/getAnnot.Rd | 2 - man/getTrans.Rd | 4 +- man/move.Rd |only man/plotPanels.Rd |only man/read.abif.Rd | 42 +++++++++++++++++++++-- man/read.alignment.Rd | 5 +- man/readPanels.Rd | 28 ++------------- man/swap.Rd |only man/translate.Rd | 4 +- 23 files changed, 147 insertions(+), 42 deletions(-)
Author: Matthias Templ
Title: Statistical Disclosure Control methods for the generation of
public- and scientific-use files.
Description: Data from statistical agencies and other institutions are
mostly confidential. This package can be used for the
generation of save (micro)data, i.e. for the generation of
public- and scientific-use files.
Diff between sdcMicro versions 2.5.8 dated 2009-03-09 and 2.6.1 dated 2009-09-18
DESCRIPTION | 29 +++++++++------ R/freqCalc.r | 18 +++++++-- R/pram.r | 52 ++++++++++++++++++++++++--- R/sdcGUI.r |only R/swappNum.R | 8 +++- R/zzz.R | 5 ++ inst/doc/Rplots.pdf | 86 +++++++++++++++++++++------------------------ inst/doc/sdcMicroPaper.pdf |binary man/CASCrefmicrodata.Rd | 3 + man/addNoise.Rd | 39 +++++++++++++++----- man/casc1.Rd | 2 - man/dRisk.Rd | 4 +- man/dRiskRMD.Rd | 24 ++++++++++-- man/dUtility.Rd | 17 ++++++-- man/free1.Rd | 3 + man/freqCalc.Rd | 27 +++++++++++--- man/indivRisk.Rd | 8 ++-- man/localSupp.Rd | 17 +++++--- man/localSupp2.Rd | 25 ++++++++----- man/localSupp2Wrapper.Rd | 8 +++- man/microData.Rd | 2 - man/microaggregation.Rd | 67 ++++++++++++++++++++++++++--------- man/plot.indivRisk.Rd | 9 ++++ man/plotMicro.Rd | 10 ++++- man/print.pram.Rd | 7 +++ man/sdcGUI.Rd |only man/sdcMicro-package.Rd | 49 ++++++++++++++++++------- man/summary.freqCalc.Rd | 5 +- man/summary.micro.Rd | 14 ++++--- man/summary.pram.Rd | 7 +++ man/valTable.Rd | 6 +++ 31 files changed, 399 insertions(+), 152 deletions(-)
Author: Chris Stubben, Brook Milligan, Patrick Nantel
Title: Construction and analysis of matrix population models
Description: Construct and analyze projection matrix models from a
demography study of marked individuals classified by age or
stage. The package covers methods described in Matrix
Population Models by Caswell (2001) and Quantitative
Conservation Biology by Morris and Doak (2002).
Diff between popbio versions 1.1.11 dated 2008-12-11 and 2.0 dated 2009-09-18
DESCRIPTION | 14 ++++- R/LTRE.R | 2 R/damping.ratio.R |only R/elasticity.R |only R/fundamental.matrix.R | 15 +++--- R/generation.time.R | 23 +++++---- R/image2.R | 19 +++++--- R/lambda.R |only R/lnorms.R | 11 ++-- R/matplot2.R |only R/multiresultm.R | 5 +- R/net.reproductive.rate.R | 17 ++++--- R/projection.matrix.R | 2 R/reproductive.value.R |only R/resample.R |only R/sensitivity.R |only R/splitA.R |only R/stable.stage.R |only R/stage.vector.plot.R | 2 R/var2.R |only R/vitalsim.R | 6 +- data/calathea.rda |binary data/hudsonia.R | 2 data/teasel.R | 27 ++--------- data/tortoise.R | 101 ++++++++++++++++++++----------------------- data/whale.R | 44 +----------------- demo/00Index | 1 demo/Caswell.R |only demo/fillmore.R | 49 +++++--------------- inst/ChangeLog | 45 +++++++++++++++++-- man/01Introduction.Rd | 10 ++-- man/02Caswell.Rd | 53 +++++++++++----------- man/LTRE.Rd | 50 +++------------------ man/calathea.Rd | 27 ++++------- man/damping.ratio.Rd |only man/eigen.analysis.Rd | 20 ++------ man/elasticity.Rd |only man/fundamental.matrix.Rd | 8 ++- man/generation.time.Rd | 22 +++++---- man/hudsonia.Rd | 13 ++--- man/image2.Rd | 35 +++++++------- man/lambda.Rd |only man/lnorms.Rd | 27 +++++------ man/matplot2.Rd |only man/mean.list.Rd | 2 man/monkeyflower.Rd | 7 +- man/multiresultm.Rd | 10 ++-- man/net.reproductive.rate.Rd | 20 +++++--- man/pop.projection.Rd | 6 +- man/reproductive.value.Rd |only man/resample.Rd |only man/sensitivity.Rd |only man/splitA.Rd |only man/stable.stage.Rd |only man/stage.vector.plot.Rd | 4 - man/teasel.Rd | 48 +++----------------- man/tortoise.Rd | 73 +++++++------------------------ man/var2.Rd |only man/whale.Rd | 88 ++++--------------------------------- 59 files changed, 360 insertions(+), 548 deletions(-)
Author: Stef van Buuren
Diff between mice versions 2.0 dated 2009-08-27 and 2.1 dated 2009-09-18
Title: Multivariate Imputation by Chained Equations
Description: Multiple Imputation using Fully Conditional Specification
DESCRIPTION | 14 ++++----
NAMESPACE | 6 ++-
R/mice.R | 103 ++++++++++++++++++++++++++++++++++++------------------------
R/zzz.R | 5 +-
inst/NEWS | 60 +++++++++++++++++++---------------
man/mids.Rd | 3 -
man/pool.Rd | 5 +-
7 files changed, 113 insertions(+), 83 deletions(-)
Author: Wolfgang Viechtbauer
Diff between metafor versions 0.5-3 dated 2009-07-31 and 0.5-4 dated 2009-09-18
Title: Meta-Analysis Package for R
Description: The metafor package consists of a collection of functions
for conducting meta-analyses in R. Fixed- and random-effects
models (with and without moderators) can be fitted via the
general linear (mixed-effects) model. For 2x2 table data, the
Mantel-Haenszel and Peto's method are also implemented.
DESCRIPTION | 8
NAMESPACE | 7
NEWS | 39 +-
R/metafor.R | 733 +++++++++++++++++++++++++++++++++++----------
man/addpoly.default.Rd | 8
man/addpoly.rma.Rd | 6
man/anova.rma.uni.Rd |only
man/blup.rma.uni.Rd | 2
man/cint.rma.uni.Rd | 8
man/coef.rma.Rd | 2
man/dat.bcg.Rd | 8
man/escalc.Rd | 13
man/fitstats.rma.Rd | 11
man/fitted.rma.Rd | 2
man/forest.default.Rd | 8
man/forest.rma.Rd | 4
man/fsn.Rd | 40 ++
man/funnel.rma.Rd | 2
man/hatvalues.rma.uni.Rd | 2
man/influence.rma.uni.Rd | 2
man/logLik.rma.Rd | 2
man/plot.rma.uni.Rd | 2
man/plot.rma.uni.infl.Rd | 2
man/predict.rma.uni.Rd | 10
man/print.anova.rma.uni.Rd |only
man/print.fsn.Rd |only
man/print.ranktest.rma.Rd |only
man/print.regtest.rma.Rd |only
man/print.rma.uni.Rd | 3
man/print.rma.uni.infl.Rd | 4
man/qqnorm.rma.uni.Rd | 6
man/radial.rma.Rd | 6
man/ranktest.Rd | 78 ----
man/ranktest.rma.Rd |only
man/regtest.Rd |only
man/regtest.rma.Rd |only
man/residuals.rma.Rd | 2
man/rma.uni.Rd | 36 +-
man/transf.Rd | 6
man/trimfill.rma.uni.Rd | 8
man/vcov.rma.Rd | 2
41 files changed, 741 insertions(+), 331 deletions(-)
Author: Luke Keele
Diff between mediation versions 2.0 dated 2009-07-18 and 2.1 dated 2009-09-18
Title: R Package for Causal Mediation Analysis
Description: mediation is a publicly available R package that allows
both parametric and nonparametric causal mediation analysis.
It implements the methods and suggestions in Imai, Keele, and
Yamamoto (2008) and Imai, Keele, Tingley (2009). In addition
to the estimation of causal mediation effects, the software
also allows researchers to conduct sensitivity analysis for
certain parametric models.
ChangeLog | 1 +
DESCRIPTION | 10 +++++-----
R/medsens.R | 13 ++++++-------
man/mediate.Rd | 2 +-
man/medsens.Rd | 2 +-
man/plot.medsens.Rd | 3 ++-
man/summary.mediate.Rd | 3 ++-
man/summary.medsens.Rd | 3 ++-
8 files changed, 20 insertions(+), 17 deletions(-)
Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer
J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko,
Stéphane Dray, David Forrest, Patrick Giraudoux, Duncan
Golicher, Virgilio Gómez Rubio, Patrick Hausmann, Thomas
Jagger, Sebastian P. Luque, Don MacQueen, Andrew Niccolai and
Tom Short
Title: Tools for reading and handling spatial objects
Description: Set of tools for manipulating and reading geographic data,
in particular ESRI shapefiles; C code used from shapelib. It
includes binary access to GSHHS shoreline files. The package
also provides interface wrappers for exchanging spatial objects
with packages such as PBSmapping, spatstat, maps, RArcInfo,
Stata tmap, WinBUGS, Mondrian, and others.
Diff between maptools versions 0.7-25 dated 2009-06-24 and 0.7-26 dated 2009-09-18
ChangeLog | 11 +++++++++++ DESCRIPTION | 8 ++++---- inst/ChangeLog | 11 +++++++++++ man/GE_SpatialGrid.Rd | 4 +++- man/Map2poly.Rd | 2 +- man/SpatialLines2PolySet.Rd | 2 +- man/asciigrid.Rd | 2 +- man/kmlLine.Rd | 4 +++- man/kmlOverlay.Rd | 3 ++- man/kmlPolygon.Rd | 2 ++ man/nowrapRecenter.Rd | 2 +- 11 files changed, 40 insertions(+), 11 deletions(-)
Author: Rob J Hyndman
Diff between hdrcde versions 2.10 dated 2009-08-19 and 2.11 dated 2009-09-18
Title: Highest density regions and conditional density estimation
Description: Computation of highest density regions in one and two
dimensions, kernel estimation of univariate density functions
conditional on one covariate, and multimodal regression.
ChangeLog |only
DESCRIPTION | 14 +++++++-------
INDEX | 1 +
NAMESPACE | 2 +-
R/HDRbw.r |only
R/hdr.R | 4 ++--
R/hdr.boxplot.R | 14 +++-----------
R/hdr.den.R | 38 +++++++++++++++++++-------------------
man/cde.Rd | 2 +-
man/hdr.Rd | 10 +++++-----
man/hdr.conf.Rd | 2 +-
man/hdrbw.Rd |only
man/plot.cde.Rd | 2 +-
13 files changed, 41 insertions(+), 48 deletions(-)
More information about iGenomicViewer at CRAN
Permanent link
Author: Paul Murrell and Richard Walton.
Title: Importing Vector Graphics
Description: Functions for converting, importing, and drawing
PostScript pictures in R plots.
Diff between grImport versions 0.4-3 dated 2009-04-21 and 0.4-4 dated 2009-09-18
DESCRIPTION | 6 R/PostScript2RGML.R | 22 inst/doc/changes.txt | 6 inst/doc/import.pdf | 2126 +++++++++++++++++++++++++-------------------------- 4 files changed, 1080 insertions(+), 1080 deletions(-)
Author: Karoly Antal
Diff between gnumeric versions 0.5-2 dated 2009-09-03 and 0.5-3 dated 2009-09-18
Title: Read data from files readable by gnumeric
Description: Read data files readable by gnumeric into R. Can read
whole sheet or a range, from several file formats, including
the native format of gnumeric. Reading is done by using
ssconvert (a file converter utility included in the gnumeric
distribution http://projects.gnome.org/gnumeric/) to convert
the requested part to CSV. From gnumeric files (but not other
formats) can list sheet names and sheet sizes or read all
sheets.
DESCRIPTION | 14 +++--
R/read.gnumeric.R | 106 ++++++++++++++++++++++++++++++++++++++--
changelog |only
man/read.gnumeric.range.Rd | 4 -
man/read.gnumeric.sheet.Rd | 38 +++++++++++---
man/read.gnumeric.sheet.info.Rd |only
man/read.gnumeric.sheets.Rd |only
7 files changed, 142 insertions(+), 20 deletions(-)
Author: Fernando Martins
Title: Implementation of the "Flexible kernels for RBF network"
algorithm
Description: Flexible kernerl for radial basis function network
implementation.
Diff between frbf versions 1.0 dated 2009-09-09 and 1.0.1 dated 2009-09-18
DESCRIPTION | 8 ++++---- R/1_classes.r | 43 ++++++++++--------------------------------- R/2_common.r | 53 ++++++++++++++++++++++++++++++++++++++++++----------- R/3_model.r | 19 ++++++++----------- R/4_predict.r | 21 +++++++++++---------- R/5_main.r | 6 ++++++ 6 files changed, 81 insertions(+), 69 deletions(-)
Author: Rob J Hyndman
Diff between forecast versions 2.00 dated 2009-09-07 and 2.01 dated 2009-09-18
Title: Forecasting functions for time series
Description: Methods and tools for displaying and analysing univariate
time series forecasts including exponential smoothing via state
space models and automatic ARIMA modelling.
ChangeLog | 4 ++++
DESCRIPTION | 8 ++++----
R/forecast2.R | 18 ++++++++++++++++--
man/croston.Rd | 3 ++-
4 files changed, 26 insertions(+), 7 deletions(-)
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann
Gneiting, University of Washington With contributions from
Bobby Yuen and Michael Polokowski
Title: Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts
from ensemble forecasts and weather observations.
Diff between ensembleBMA versions 4.3.2 dated 2009-09-09 and 4.3.3 dated 2009-09-18
DESCRIPTION | 8 ++++---- R/fitBMAgamma0.R | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Author: Antonio Gasparrini and Ben Armstrong
Title: Distributed Lag Non-linear Models
Description: The package dlnm contains functions to specify basis and
cross-basis matrices in order to run distributed lag models and
their non-linear extension, then to predict and graph the
results for a fitted model.
Diff between dlnm versions 0.4.1 dated 2009-08-04 and 1.0.1 dated 2009-09-18
dlnm-0.4.1/dlnm/inst/dlnmChangeLog |only dlnm-1.0.1/dlnm/DESCRIPTION | 11 dlnm-1.0.1/dlnm/NAMESPACE | 1 dlnm-1.0.1/dlnm/R/crossplot.R | 2 dlnm-1.0.1/dlnm/R/crosspred.R | 32 dlnm-1.0.1/dlnm/data |only dlnm-1.0.1/dlnm/inst/ChangeLog |only dlnm-1.0.1/dlnm/inst/doc/Rplots.pdf |37313 +++++++++++++-------------- dlnm-1.0.1/dlnm/inst/doc/dlnmOverview.Rnw | 186 dlnm-1.0.1/dlnm/inst/doc/dlnmOverview.pdf |41458 ++++++++++++++---------------- dlnm-1.0.1/dlnm/man/chicagoNMMAPS.Rd |only dlnm-1.0.1/dlnm/man/crossbasis.Rd | 17 dlnm-1.0.1/dlnm/man/crossplot.Rd | 15 dlnm-1.0.1/dlnm/man/crosspred.Rd | 24 dlnm-1.0.1/dlnm/man/dlnm-internal.Rd | 4 dlnm-1.0.1/dlnm/man/dlnm-package.Rd | 6 16 files changed, 39111 insertions(+), 39958 deletions(-)
Author: Roger Bivand
Diff between classInt versions 0.1-11 dated 2009-05-29 and 0.1-12 dated 2009-09-18
Title: Choose univariate class intervals
Description: A package for choosing univariate class intervals for
mapping or other graphics purposes
ChangeLog | 7 ++++++-
DESCRIPTION | 8 ++++----
man/classIntervals.Rd | 2 +-
man/findColours.Rd | 2 +-
4 files changed, 12 insertions(+), 7 deletions(-)
Author: Hsin-ya Lee, Yung-jin Lee
Diff between bear versions 2.4.0 dated 2009-07-21 and 2.4.1 dated 2009-09-18
Title: Average bioequivalence and bioavailability data analysis tool
Description: An average bioequivalence (ABE) and bioavailability data
analysis tool including sample size estimation,
noncompartmental analysis (NCA), ANOVA (lm) for a standard
RT/TR 2x2x2 crossover design and linear mixed effect model (lme
of nlme) for a 2-treatment, 2-sequence, with 2 periods or more
(i.e. 2x2x3/2x2x4) replicate design or a 2-treatment,
2-sequence, and 1-period parallel ABE study (2x2x1).
DESCRIPTION | 15 +++----
R/BANOVA.r | 84 +++++++++++++++++++++++++++++++------------
R/BANOVAoutput.r | 2 -
R/Multiplemenu.r | 3 +
R/NCAplot.r | 2 -
R/Singlego.r | 3 +
R/description_AIC.r | 7 +--
R/description_ARS.r | 6 +--
R/description_NCAcsv.r | 12 +++---
R/description_NCAinput.r | 14 +++----
R/description_TOST1_lnCmax.r | 2 -
R/description_TOST_lnCmax.r | 2 -
R/description_TTT.r | 4 +-
R/description_import.r | 2 -
R/description_load.r | 2 -
R/description_plot.r | 30 ++++++++-------
R/description_size.r | 10 ++---
R/description_version.r | 17 +++++---
R/go.r | 3 +
R/statmenu.r | 3 +
R/zzz.R | 2 -
21 files changed, 138 insertions(+), 87 deletions(-)
Author: Ben Bolker
Diff between bbmle versions 0.9.0 dated 2009-02-05 and 0.9.3 dated 2009-09-18
Title: Tools for general maximum likelihood estimation
Description: Methods and functions for fitting maximum likelihood
models in R. This package modifies and extends the mle classes
in the stats4 package.
bbmle-0.9.0/bbmle/tests/binomtest1.Rout |only
bbmle-0.9.0/bbmle/tests/formulatest.Rout |only
bbmle-0.9.0/bbmle/tests/grtest1.Rout |only
bbmle-0.9.0/bbmle/tests/order.Rout |only
bbmle-0.9.3/bbmle/DESCRIPTION | 20 ++-
bbmle-0.9.3/bbmle/NEWS | 21 +++
bbmle-0.9.3/bbmle/R/dists.R | 9 +
bbmle-0.9.3/bbmle/R/mle.R | 129 ++++++++++++---------
bbmle-0.9.3/bbmle/R/predict.R | 148 ++++++++++++++++++-------
bbmle-0.9.3/bbmle/TODO | 43 +++++--
bbmle-0.9.3/bbmle/inst |only
bbmle-0.9.3/bbmle/man/ICtab.Rd | 8 +
bbmle-0.9.3/bbmle/man/mle-class.Rd | 9 +
bbmle-0.9.3/bbmle/man/mle2.Rd | 5
bbmle-0.9.3/bbmle/man/mle2.options.Rd | 4
bbmle-0.9.3/bbmle/man/predict-methods.Rd | 19 ++-
bbmle-0.9.3/bbmle/man/sbinom.Rd | 10 +
bbmle-0.9.3/bbmle/tests/BIC.R |only
bbmle-0.9.3/bbmle/tests/BIC.Rout.save |only
bbmle-0.9.3/bbmle/tests/binomtest1.Rout.save | 9 -
bbmle-0.9.3/bbmle/tests/formulatest.R | 2
bbmle-0.9.3/bbmle/tests/formulatest.Rout.save | 51 +++++---
bbmle-0.9.3/bbmle/tests/glmcomp.R |only
bbmle-0.9.3/bbmle/tests/grtest1.Rout.save |only
bbmle-0.9.3/bbmle/tests/mortanal.Rout.save | 17 +-
bbmle-0.9.3/bbmle/tests/order.Rout.save |only
bbmle-0.9.3/bbmle/tests/predict.Rout.save |only
bbmle-0.9.3/bbmle/tests/test-relist1.Rout.save | 11 -
bbmle-0.9.3/bbmle/tests/testbounds.Rout |only
bbmle-0.9.3/bbmle/tests/testbounds.Rout.save |only
bbmle-0.9.3/bbmle/tests/testparpred.R |only
bbmle-0.9.3/bbmle/tests/testparpred.Rout.save |only
32 files changed, 356 insertions(+), 159 deletions(-)
Author: Romain Francois
Title: Version of ant specific to R
Description: Version of the ant apache build tool, with a few R
specific tasks to ease use of ant within an R package
Diff between ant versions 0.0-6 dated 2009-09-08 and 0.0-8 dated 2009-09-18
DESCRIPTION | 8 ++++---- R/ant.R | 1 - inst/java_src/src/org/rproject/ant/AntRMainLoopCallbacks.java | 8 ++++---- inst/java_src/src/org/rproject/ant/RTask.java | 1 + man/ant-package.Rd | 4 ++-- 5 files changed, 11 insertions(+), 11 deletions(-)
Author: Tuomas Rajala
Title: Spatial Graph based Clustering Summaries for spatial point
patterns
Description: Graph based clustering summaries for spatial point
patterns. Includes 4 functions: Connectivity function,
Cumulative connectivity function and clustering function, plus
the triplet intensity function T.
Diff between SGCS versions 0.9 dated 2009-03-06 and 1.3 dated 2009-09-18
.cproject |only .project | 67 +++++++++++++++++++++++++++++++ DESCRIPTION | 19 +++++--- R/Tfun.R |only R/clustfun.R | 33 +++++++++++---- R/confun.R | 41 ++++++++++++++++--- R/cumconfun.R | 40 ++++++++++++++++-- R/fclass.R | 110 ++++++++++++++++++++++++++-------------------------- R/fun.R | 108 +++++++++++++++++++++++++++++++-------------------- R/fun_old.R |only change.log | 13 ++++++ man/SGCS-funs.Rd | 70 +++++++++++++++------------------ man/SGCS-package.Rd | 14 +++--- src/Fun.h | 2 src/Tfun.cpp |only src/Tfun.h |only src/rfun.cpp | 6 +- 17 files changed, 354 insertions(+), 169 deletions(-)
Author: Henrik Bengtsson
Diff between R.rsp versions 0.3.4 dated 2008-03-07 and 0.3.6 dated 2009-09-18
Title: R Server Pages
Description: An R Server Page (RSP) is a document that contains both
text in a format of choice (HTML, TeX, ...) as well as R source
code within special tags. An RSP file can be translated into a
so called R servlet, which is an R script that outputs the
final document when sourced. This way documents in any format
can be generated dynamically using R, e.g. automatic reports of
statistical analysis. Utilizing an internal cross-platform web
server, this package provides dynamic help pages in HTML. If
other packages provide RSP help pages, these are automatically
linked to in the RSP main menu.
R.rsp-0.3.4/R.rsp/inst/HISTORY |only
R.rsp-0.3.6/R.rsp/DESCRIPTION | 39 -
R.rsp-0.3.6/R.rsp/R/000.R | 20
R.rsp-0.3.6/R.rsp/R/999.NonDocumentedObjects.R | 6
R.rsp-0.3.6/R.rsp/R/999.package.R | 2
R.rsp-0.3.6/R.rsp/R/compileRsp.R |only
R.rsp-0.3.6/R.rsp/R/dvips.R |only
R.rsp-0.3.6/R.rsp/R/epsDev.R |only
R.rsp-0.3.6/R.rsp/R/parseRsp.R |only
R.rsp-0.3.6/R.rsp/R/ps2pdf.R |only
R.rsp-0.3.6/R.rsp/R/rspCapture.R |only
R.rsp-0.3.6/R.rsp/R/rsptex.R |only
R.rsp-0.3.6/R.rsp/R/sourceRsp.R | 6
R.rsp-0.3.6/R.rsp/R/translateRsp.R | 669 +++++-------------------
R.rsp-0.3.6/R.rsp/R/translateRspV1.R |only
R.rsp-0.3.6/R.rsp/R/zzz.R | 7
R.rsp-0.3.6/R.rsp/incl/vignettes/rtex.R | 4
R.rsp-0.3.6/R.rsp/inst/NEWS |only
R.rsp-0.3.6/R.rsp/inst/tcl/r-httpd.tcl | 5
R.rsp-0.3.6/R.rsp/man/FileRspResponse.Rd | 2
R.rsp-0.3.6/R.rsp/man/HtmlRspLanguage.Rd | 2
R.rsp-0.3.6/R.rsp/man/HttpDaemon.Rd | 2
R.rsp-0.3.6/R.rsp/man/HttpDaemonRspResponse.Rd | 2
R.rsp-0.3.6/R.rsp/man/HttpRequest.Rd | 2
R.rsp-0.3.6/R.rsp/man/Non-documented_objects.Rd | 6
R.rsp-0.3.6/R.rsp/man/R.rsp-package.Rd | 2
R.rsp-0.3.6/R.rsp/man/RspLanguage.Rd | 2
R.rsp-0.3.6/R.rsp/man/RspPage.Rd | 2
R.rsp-0.3.6/R.rsp/man/RspResponse.Rd | 2
R.rsp-0.3.6/R.rsp/man/parseRsp.Rd |only
R.rsp-0.3.6/R.rsp/man/rsptex.Rd |only
R.rsp-0.3.6/R.rsp/man/sourceRsp.Rd | 4
R.rsp-0.3.6/R.rsp/man/translateRsp.Rd | 30 -
R.rsp-0.3.6/R.rsp/man/translateRspV1.Rd |only
34 files changed, 229 insertions(+), 587 deletions(-)
Author: Henrik Bengtsson
Diff between R.cache versions 0.1.8 dated 2009-09-08 and 0.1.9 dated 2009-09-18
Title: Fast and light-weight caching of objects
Description: Methods for memoization, that is, caching arbitrary R
objects in persistent memory. Objects can be loaded and saved
stratified on a set of hashing objects.
DESCRIPTION | 10 ++++------
R/loadCache.R | 23 +++++++++++++++++++++--
inst/NEWS | 13 +++++++++++--
man/loadCache.Rd | 4 +++-
4 files changed, 39 insertions(+), 11 deletions(-)
Author: Jose L. Izquierdo
Diff between Metabonomic versions 3.2.1 dated 2009-07-02 and 3.3 dated 2009-09-18
Title: GUI for Metabonomic Analysis
Description: Graphical User Interface for the Metabonomic Analysis
(Baseline, Normalization, Peak Detection, PCA, PLS, Nearest
Neigbourgt, Neural Network) developed to make easy this data
analysis.
DESCRIPTION | 15 ++++++++-------
R/Import.data.R | 38 +++++++++++++++++++++++++++-----------
R/Met.Aligm.R | 2 +-
R/Met.Binning.R | 3 ++-
R/Met.NN2.R | 2 +-
R/Met.PLS2.R | 43 ++++++++++++++++++++++++++++++++++---------
R/Met.kopls.R |only
R/Met.peak.detection.R | 2 +-
R/Metabonomic.R | 42 ++++++++++++++++++++++++++++++++----------
R/msc.biomarkers.fill.R |only
R/msc.peaks.align.R |only
R/msc.peaks.alignment.R |only
R/msc.peaks.clust.R |only
R/msc.peaks.find.R |only
inst/PROcess_1.8.0.zip |only
inst/Thumbs.db |binary
inst/kopls_1.0.3.zip |only
man/Met.kopls.Rd |only
man/msc.biomarkers.fill.Rd |only
man/msc.peaks.align.Rd |only
man/msc.peaks.alignment.Rd |only
man/msc.peaks.clust.Rd |only
man/msc.peaks.find.Rd |only
23 files changed, 106 insertions(+), 41 deletions(-)
Author: Kenneth Knoblauch and Laurence T. Maloney, based in part on C
code written by Laurence T. Maloney and J. N. Yang
Title: Maximum Likelihood Difference Scaling
Description: Difference scaling is a method for scaling perceived
supra-threshold differences. The package contains functions
that allow the user to design and run a difference scaling
experiment, to fit the resulting data by maximum likelihood and
test the internal validity of the estimated scale.
Diff between MLDS versions 0.2-1 dated 2009-08-21 and 0.2-2 dated 2009-09-18
MLDS-0.2-1/MLDS/R/runSampleExperiment.R |only MLDS-0.2-1/MLDS/man/DisplayOneTrial.Rd |only MLDS-0.2-1/MLDS/man/runSampleExperiment.Rd |only MLDS-0.2-2/MLDS/DESCRIPTION | 8 +-- MLDS-0.2-2/MLDS/NAMESPACE | 36 +++++++++++++-- MLDS-0.2-2/MLDS/R/as.mlds.df.R | 33 ++++++++++---- MLDS-0.2-2/MLDS/R/binom.diagnostics.R | 4 - MLDS-0.2-2/MLDS/R/boot.mlds.R | 20 +++++++- MLDS-0.2-2/MLDS/R/coef.mlds.R | 6 ++ MLDS-0.2-2/MLDS/R/fitted.mlds.R | 4 + MLDS-0.2-2/MLDS/R/logLik.mlds.R | 10 +++- MLDS-0.2-2/MLDS/R/mlds.R | 66 ++++++++++++++++++++++++----- MLDS-0.2-2/MLDS/R/plot.mlds.R | 27 +++++++++++ MLDS-0.2-2/MLDS/R/pmc.R | 4 - MLDS-0.2-2/MLDS/R/predict.mlds.R | 11 ++++ MLDS-0.2-2/MLDS/R/print.mlds.R | 9 +++ MLDS-0.2-2/MLDS/R/print.summary.mlds.R | 25 ++++++++++ MLDS-0.2-2/MLDS/R/rbind.mlds.df.R | 11 ++++ MLDS-0.2-2/MLDS/R/runQuadExperiment.R |only MLDS-0.2-2/MLDS/R/runTriadExperiment.R |only MLDS-0.2-2/MLDS/R/summary.mlds.R | 19 ++++++++ MLDS-0.2-2/MLDS/R/vcov.mlds.R | 5 +- MLDS-0.2-2/MLDS/data/kktriad.rda |only MLDS-0.2-2/MLDS/inst/NEWS | 16 +++++++ MLDS-0.2-2/MLDS/man/DisplayOneQuad.Rd |only MLDS-0.2-2/MLDS/man/as.mlds.df.Rd | 17 +++---- MLDS-0.2-2/MLDS/man/binom.diagnostics.Rd | 3 - MLDS-0.2-2/MLDS/man/boot.mlds.Rd | 14 +++--- MLDS-0.2-2/MLDS/man/fitted.mlds.Rd | 9 ++- MLDS-0.2-2/MLDS/man/kk.Rd | 25 +++++++--- MLDS-0.2-2/MLDS/man/logLik.mlds.Rd | 9 ++- MLDS-0.2-2/MLDS/man/mlds.Rd | 31 ++++++++++--- MLDS-0.2-2/MLDS/man/plot.mlds.Rd | 12 ++++- MLDS-0.2-2/MLDS/man/predict.mlds.Rd | 11 +++- MLDS-0.2-2/MLDS/man/print.mlds.Rd | 11 +++- MLDS-0.2-2/MLDS/man/rbind.mlds.df.Rd | 12 +++-- MLDS-0.2-2/MLDS/man/runQuadExperiment.Rd |only MLDS-0.2-2/MLDS/man/summary.mlds.Rd | 14 ++++-- 38 files changed, 388 insertions(+), 94 deletions(-)
Author: Kenneth Knoblauch and Laurence T. Maloney
Title: Maximum Likelihood Conjoint Measurement
Description: Conjoint measurement is a psychophysical procedure in
which stimulus pairs are presented that vary along 2 or more
dimensions and the observer is required to compare the stimuli
along one of them. This package contains functions to estimate
the contribution of the n scales to the judgment by a maximum
likelihood method under several hypotheses of how the
perceptual dimensions interact.
Diff between MLCM versions 0.0-1 dated 2009-09-09 and 0.0-2 dated 2009-09-18
DESCRIPTION | 10 +++++----- NAMESPACE | 5 ++++- R/binom.diagnostics.R |only R/boot.mlcm.R |only R/fitted.mlcm.R |only inst/NEWS |only inst/ToDo | 3 +-- man/binom.diagnostics.Rd |only man/boot.mlcm.Rd |only man/fitted.mlcm.Rd |only 10 files changed, 10 insertions(+), 8 deletions(-)
Author: Bjoern Bornkamp, Jose Pinheiro and Frank Bretz
Title: Design and Analysis of Dose-Finding Studies
Description: This package implements a methodology for the design and
analysis of dose-response studies that combines aspects of
multiple comparison procedures and modeling approaches (Bretz,
Pinheiro and Branson, 2005, Biometrics 61, 738-748). The
package provides tools for the analysis of dose finding trials
as well as a variety of tools necessary to plan a trial to be
conducted with the MCPMod methodology.
Diff between MCPMod versions 1.0-3 dated 2009-04-27 and 1.0-4 dated 2009-09-18
ChangeLog | 10 DESCRIPTION | 8 R/analysisMM.R | 3 inst/doc/MCPMod.pdf | 2101 +++++++++++++++++++++++++------------------------- inst/doc/Rplots.pdf | 750 ++++++++--------- man/MCPMod-package.Rd | 4 6 files changed, 1456 insertions(+), 1420 deletions(-)
Author: Jouni Lehtonen
Diff between KFAS versions 0.3.3 dated 2009-08-27 and 0.4.1 dated 2009-09-18
Title: Multivariate Kalman filter and smoother, simulation smoother and
forecasting
Description: Package KFAS provides functions for fast Kalman filtering,
smoothing, forecasting and simulation of multivariate
time-variant state space models. All functions can use exact
diffuse initialisation when distributions of some or all
elements of initial state vector are unknown. Functions use
sequential processing algorithm, which is faster than standard
approach, and it also allows singularity of prediction error
variance matrix.
KFAS-0.3.3/KFAS/man/estmiss.Rd |only
KFAS-0.4.1/KFAS/DESCRIPTION | 20 ++++----
KFAS-0.4.1/KFAS/NAMESPACE | 2
KFAS-0.4.1/KFAS/R/KFAS.R | 87 ++++++++---------------------------
KFAS-0.4.1/KFAS/man/kf.Rd | 4 -
KFAS-0.4.1/KFAS/src/kf.f90 | 100 +++++++++++++++++++----------------------
6 files changed, 82 insertions(+), 131 deletions(-)
Author: Roger Bivand
Title: Interface between GRASS 5.0 geographical information system and
R
Description: Interface between GRASS 5.0 geographical information
system and R, based on starting R from within the GRASS
environment using values of environment variables set in the
GISRC file. Interface examples should be run outside GRASS,
others may be run within. Wrapper and helper functions are
provided for a range of R functions to match the interface
metadata structures.
Diff between GRASS versions 0.3-7 dated 2008-03-12 and 0.3-8 dated 2009-09-18
DESCRIPTION | 24 ++++++++++++++---------- man/interp.new.G.Rd | 2 +- man/krige.G.Rd | 2 +- 3 files changed, 16 insertions(+), 12 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.97-8 dated 2009-09-07 and 0.97-10 dated 2009-09-18
DESCRIPTION | 8 ++++---- R/FrF2.R | 3 +++ R/pb.R | 3 +++ inst/NEWS | 7 +++++++ man/utilitiesPB.Rd | 4 ++-- 5 files changed, 19 insertions(+), 6 deletions(-)
Author: Ella Roelant, Stefan Van Aelst, Gert Willems
Title: Fast and Robust Bootstrap
Description: This package performs robust inference based on applying
Fast and Robust Bootstrap on robust estimators. Available
methods are multivariate regression, PCA and Hotelling tests.
Diff between FRB versions 1.4 dated 2009-05-13 and 1.6 dated 2009-09-18
FRB-1.4/FRB/R/FRBHotellingMM.R |only FRB-1.4/FRB/R/MMboottwosample.R |only FRB-1.4/FRB/R/Sboottwosample.R |only FRB-1.4/FRB/R/plotDiag.r |only FRB-1.4/FRB/R/plotFRB.R |only FRB-1.4/FRB/R/plotFRBconf.r |only FRB-1.4/FRB/R/print.FRBhot.r |only FRB-1.4/FRB/R/twosampleMM.R |only FRB-1.4/FRB/R/twosampleS.R |only FRB-1.4/FRB/man/MMboottwosample.Rd |only FRB-1.4/FRB/man/Sboottwosample.Rd |only FRB-1.4/FRB/man/twosampleMM.Rd |only FRB-1.4/FRB/man/twosampleS.Rd |only FRB-1.6/FRB/DESCRIPTION | 8 - FRB-1.6/FRB/R/FRBhotellingMM.R |only FRB-1.6/FRB/R/FRBhotellingS.R | 20 +-- FRB-1.6/FRB/R/FRBmultiregGS.R | 17 ++ FRB-1.6/FRB/R/FRBmultiregMM.R | 17 ++ FRB-1.6/FRB/R/FRBmultiregS.R | 21 +++ FRB-1.6/FRB/R/FRBpcaMM.R | 2 FRB-1.6/FRB/R/FRBpcaS.R | 5 FRB-1.6/FRB/R/GSboot_multireg.R | 161 ++++++++++++++++++-------- FRB-1.6/FRB/R/GSest_multireg.R | 14 +- FRB-1.6/FRB/R/MMboot_multireg.R | 199 ++++++++++++++++++++++----------- FRB-1.6/FRB/R/MMboot_twosample.r |only FRB-1.6/FRB/R/MMest_loccov.R | 6 FRB-1.6/FRB/R/MMest_multireg.R | 7 - FRB-1.6/FRB/R/MMest_twosample.r |only FRB-1.6/FRB/R/Sboot_multireg.R | 172 ++++++++++++++++++++-------- FRB-1.6/FRB/R/Sboot_twosample.r |only FRB-1.6/FRB/R/Sest_loccov.R | 8 - FRB-1.6/FRB/R/Sest_multireg.R | 6 FRB-1.6/FRB/R/Sest_twosample.r |only FRB-1.6/FRB/R/plotFRBhot.r |only FRB-1.6/FRB/R/plotFRBhotDiag.r |only FRB-1.6/FRB/R/plotFRBmultireg.r |only FRB-1.6/FRB/R/plotFRBmultiregDiag.r |only FRB-1.6/FRB/R/plotFRBpca.r | 13 +- FRB-1.6/FRB/R/plotFRBpcaDiag.r |only FRB-1.6/FRB/R/summary_FRBhot.r |only FRB-1.6/FRB/R/summary_FRBmultireg.r | 107 ++++++++++------- FRB-1.6/FRB/R/summary_FRBpca.r | 17 +- FRB-1.6/FRB/man/FRBhotellingMM.Rd | 57 +++++++-- FRB-1.6/FRB/man/FRBhotellingS.Rd | 53 +++++++- FRB-1.6/FRB/man/FRBmultiregGS.Rd | 25 +++- FRB-1.6/FRB/man/FRBmultiregMM.Rd | 28 +++- FRB-1.6/FRB/man/FRBmultiregS.Rd | 25 +++- FRB-1.6/FRB/man/FRBpcaMM.Rd | 4 FRB-1.6/FRB/man/FRBpcaS.Rd | 4 FRB-1.6/FRB/man/GSboot_multireg.Rd | 13 +- FRB-1.6/FRB/man/GSest_multireg.Rd | 3 FRB-1.6/FRB/man/MMboot_multireg.Rd | 13 ++ FRB-1.6/FRB/man/MMboot_twosample.rd |only FRB-1.6/FRB/man/MMest_loccov.Rd | 6 FRB-1.6/FRB/man/MMest_multireg.Rd | 16 ++ FRB-1.6/FRB/man/MMest_twosample.rd |only FRB-1.6/FRB/man/Sboot_multireg.Rd | 14 ++ FRB-1.6/FRB/man/Sboot_twosample.rd |only FRB-1.6/FRB/man/Scontrol.Rd | 2 FRB-1.6/FRB/man/Sest_loccov.Rd | 3 FRB-1.6/FRB/man/Sest_multireg.Rd | 14 ++ FRB-1.6/FRB/man/Sest_twosample.rd |only FRB-1.6/FRB/man/diagplot.rd |only FRB-1.6/FRB/man/plot.FRBhot.Rd |only FRB-1.6/FRB/man/plot.FRBmultireg.Rd | 62 +++------- FRB-1.6/FRB/man/plot.FRBpca.Rd | 31 ++++- FRB-1.6/FRB/man/print.FRBhot.Rd | 11 - FRB-1.6/FRB/man/summary.FRBhot.rd |only FRB-1.6/FRB/man/summary.FRBmultireg.Rd | 15 +- FRB-1.6/FRB/man/summary.FRBpca.Rd | 11 - 70 files changed, 851 insertions(+), 359 deletions(-)
Author: Ulrike Groemping
Title: Wrapper package for design of experiments functionality
Description: This package creates various kinds of designs for
(industrial) experiments. It uses, and sometimes enhances,
design generation routines from other packages. Initially,
response surface designs from package rsm and latin hypercube
samples from package lhs have been implemented.
Diff between DoE.wrapper versions 0.6-1 dated 2009-09-07 and 0.6-2 dated 2009-09-18
DESCRIPTION | 8 ++++---- R/bbd.design.R | 6 +++++- R/ccd.design.R | 4 ++++ R/lhs.design.R | 3 +++ inst/NEWS | 7 +++++++ 5 files changed, 23 insertions(+), 5 deletions(-)
Author: Ulrike Groemping
Title: Full factorials, orthogonal arrays and base utilities for DoE
packages
Description: This package creates full factorial experimental designs
and designs based on orthogonal arrays for (industrial)
experiments. Additionally, it provides some utility functions
used also by other DoE packages.
Diff between DoE.base versions 0.9-1 dated 2009-09-12 and 0.9-3 dated 2009-09-18
DESCRIPTION | 8 ++++---- R/add.response.R | 8 ++++---- R/fac.design.R | 3 +++ R/oa.design.R | 7 +++++++ R/param.design.R | 4 +++- R/printandsummary.design.R | 3 ++- inst/NEWS | 11 ++++++++++- man/add.response.Rd | 2 ++ man/lm.design.Rd | 2 +- 9 files changed, 36 insertions(+), 12 deletions(-)
Author: Frank E Harrell Jr
Diff between Design versions 2.2-0 dated 2009-05-18 and 2.3-0 dated 2009-09-18
Title: Design Package
Description: Regression modeling, testing, estimation, validation,
graphics, prediction, and typesetting by storing enhanced model
design attributes in the fit. Design is a collection of about
180 functions that assist and streamline modeling, especially
for biostatistical and epidemiologic applications. It also
contains new functions for binary and ordinal logistic
regression models and the Buckley-James multiple regression
model for right-censored responses, and implements penalized
maximum likelihood estimation for logistic and ordinary linear
models. Design works with almost any regression model, but it
was especially written to work with logistic regression, Cox
regression, accelerated failure time models, ordinary linear
models, the Buckley-James model, and generalized least squares
for serially or spatially correlated observations.
Design-2.2-0/Design/inst/copyright |only
Design-2.3-0/Design/DESCRIPTION | 10
Design-2.3-0/Design/R/AFirst.lib.s | 8
Design-2.3-0/Design/R/Design.Misc.s | 56 -
Design-2.3-0/Design/R/Design.s | 17
Design-2.3-0/Design/R/Design.trans.s | 2
Design-2.3-0/Design/R/Varcov.s |only
Design-2.3-0/Design/R/bj.s | 28
Design-2.3-0/Design/R/bootcov.s | 630 +++++------
Design-2.3-0/Design/R/calibrate.psm.s | 16
Design-2.3-0/Design/R/contrast.s | 205 ++-
Design-2.3-0/Design/R/copyright.s |only
Design-2.3-0/Design/R/cph.s | 11
Design-2.3-0/Design/R/fastbw.s | 6
Design-2.3-0/Design/R/groupkm.s | 4
Design-2.3-0/Design/R/latex.psm.s | 35
Design-2.3-0/Design/R/lrm.fit.s | 18
Design-2.3-0/Design/R/lrm.fit.strat.s | 2
Design-2.3-0/Design/R/lrm.s | 18
Design-2.3-0/Design/R/matinv.s | 2
Design-2.3-0/Design/R/nomogram.Design.s | 1388 ++++++++++++-------------
Design-2.3-0/Design/R/ols.s | 14
Design-2.3-0/Design/R/predab.resample.s | 8
Design-2.3-0/Design/R/psm.s | 16
Design-2.3-0/Design/R/residuals.cph.s | 6
Design-2.3-0/Design/R/robcov.s | 3
Design-2.3-0/Design/R/survfit.cph.null.s | 2
Design-2.3-0/Design/R/survfit.cph.s | 6
Design-2.3-0/Design/R/val.prob.s | 4
Design-2.3-0/Design/R/validate.psm.s | 3
Design-2.3-0/Design/R/which.influence.s | 9
Design-2.3-0/Design/man/Design-internal.Rd | 6
Design-2.3-0/Design/man/Function.Rd | 95 -
Design-2.3-0/Design/man/anova.Design.Rd | 324 ++---
Design-2.3-0/Design/man/bootcov.Rd | 477 ++++----
Design-2.3-0/Design/man/contrast.Rd | 95 +
Design-2.3-0/Design/man/cph.Rd | 26
Design-2.3-0/Design/man/groupkm.Rd | 126 +-
Design-2.3-0/Design/man/hazard.ratio.plot.Rd | 158 +-
Design-2.3-0/Design/man/latex.cph.Rd | 70 -
Design-2.3-0/Design/man/nomogram.Rd | 5
Design-2.3-0/Design/man/plot.Design.Rd | 829 +++++++-------
Design-2.3-0/Design/man/plot.xmean.ordinaly.Rd | 119 +-
Design-2.3-0/Design/man/predab.resample.Rd | 336 +++---
Design-2.3-0/Design/man/predict.lrm.Rd | 5
Design-2.3-0/Design/man/print.cph.Rd | 45
Design-2.3-0/Design/man/print.cph.fit.Rd | 55
Design-2.3-0/Design/man/residuals.lrm.Rd | 305 ++---
Design-2.3-0/Design/man/residuals.ols.Rd | 60 -
Design-2.3-0/Design/man/rm.impute.Rd | 353 +++---
Design-2.3-0/Design/man/summary.Design.Rd | 291 ++---
Design-2.3-0/Design/man/survplot.Rd | 468 ++++----
Design-2.3-0/Design/man/val.prob.Rd | 639 +++++------
Design-2.3-0/Design/man/validate.cph.Rd | 41
Design-2.3-0/Design/man/vif.Rd | 38
55 files changed, 3760 insertions(+), 3733 deletions(-)
Author: Adrian Raftery
Diff between BMA versions 3.10 dated 2009-04-19 and 3.12 dated 2009-09-18
Title: Bayesian Model Averaging
Description: Package for Bayesian model averaging for linear models,
generalizable linear models and survival models (cox
regression).
CHANGELOG | 6 +
DESCRIPTION | 10 +--
R/glib.R | 4 -
R/imageplot.bma.R | 171 ++++++++++++++++++++++------------------------------
man/summary.iBMA.Rd | 2
5 files changed, 87 insertions(+), 106 deletions(-)
Author: Evgenia Dimitriadou
Diff between cclust versions 0.6-15 dated 2009-01-06 and 0.6-16 dated 2009-09-18
Title: Convex Clustering Methods and Clustering Indexes
Description: Convex Clustering methods, including Kmeans algorithm,
On-line Update algorithm (Hard Competitive Learning) and Neural
Gas algorithm (Soft Competitive Learning) and calculation of
several indexes for finding the number of clusters in a data
set.
DESCRIPTION | 14 ++++++++------
man/Rindexes.Rd | 10 +++++-----
man/cclust.Rd | 2 +-
3 files changed, 14 insertions(+), 12 deletions(-)
Author: Friedrich Leisch and Andreas Weingessel
Title: Generation of Artificial Binary Data
Description: Generation of correlated artificial binary data.
Diff between bindata versions 0.9-14 dated 2006-10-09 and 0.9-15 dated 2009-09-18
DESCRIPTION | 8 +++++--- man/bincorr2commonprob.Rd | 2 +- man/check.commonprob.Rd | 2 +- man/commonprob2sigma.Rd | 6 +++--- 4 files changed, 10 insertions(+), 8 deletions(-)