Author: Fortran code by R. J. Renka. R functions by Albrecht Gebhardt
Diff between tripack versions 1.3-3 dated 2009-06-16 and 1.3-4 dated 2009-09-21
Title: Triangulation of irregularly spaced data
Description: A constrained two-dimensional Delaunay triangulation
package
ChangeLog | 27 +++++++++++++++------------
DESCRIPTION | 6 +++---
R/zzz.R | 2 +-
man/tri.Rd | 2 +-
src/awvor.f |only
src/func.f |only
src/init.c | 38 +++++++++++++++++++-------------------
7 files changed, 39 insertions(+), 36 deletions(-)
Author: S original by James J. Majure
Diff between sgeostat versions 1.0-22 dated 2009-07-03 and 1.0-23 dated 2009-09-21
Title: An Object-oriented Framework for Geostatistical Modeling in S+
Description: An Object-oriented Framework for Geostatistical Modeling
in S+
ChangeLog | 16 ++++++++--------
DESCRIPTION | 8 ++++----
R/zzz.R | 2 ++
man/fit.trend.Rd | 5 -----
man/in.chull.Rd | 4 ++--
man/in.polygon.Rd | 4 ++--
man/pair.Rd | 2 +-
7 files changed, 19 insertions(+), 22 deletions(-)
Author: Benjamin P. Bryant
Title: Scenario Discovery Tools to Support Robust Decision Making
Description: Implements algorithms to help with scenario discovery -
currently only modified version of the the Patient Rule
Induction Method.
Diff between sdtoolkit versions 2.3 dated 2009-07-18 and 2.31 dated 2009-09-21
DESCRIPTION | 8 ++++---- R/trajplot.r | 4 ++-- man/1sdtoolkit-package.Rd | 13 ++++++------- 3 files changed, 12 insertions(+), 13 deletions(-)
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.9.2.0 dated 2009-09-03 and 2.9.2.1 dated 2009-09-21
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 8 ++++----
R/epicalc.R | 34 +++++++++++++++++++++++++---------
man/cc.rd | 2 +-
man/followup.plot.rd | 4 +++-
4 files changed, 33 insertions(+), 15 deletions(-)
Author: Stephen Milborrow derived from mda:mars by Trevor Hastie and
Rob Tibshirani.
Title: Multivariate Adaptive Regression Spline Models
Description: Build regression models using the techniques in Friedman's
papers "Fast MARS" and "Multivariate Adaptive Regression
Splines". (The term "MARS" is copyrighted and thus not used in
the name of the package.)
Diff between earth versions 2.3-2 dated 2009-03-23 and 2.3-4 dated 2009-09-21
DESCRIPTION | 6 NEWS | 7 R/earth.R | 2 R/earth.glm.R | 34 R/plotd.R | 2 man/earth.Rd | 123 - man/evimp.Rd | 8 man/plotd.Rd | 13 man/plotmo.Rd | 2 src/tests/earth.times.bat | 2 src/tests/test.earth.big.Rout.save | 416 ++--- src/tests/test.earth.cv.Rout.save | 2534 ++++++++++++++++++------------------ src/tests/test.earth.full.Rout.save | 1036 +++++++------- src/tests/test.earth.glm.R | 9 src/tests/test.earth.glm.Rout.save | 41 src/tests/test.earthc.mak | 2 src/tests/test.plotmo.Rout.save | 8 17 files changed, 2127 insertions(+), 2118 deletions(-)
Author: S original by David W. Scott R port by Albrecht Gebhardt
Diff between ash versions 1.0-11 dated 2009-06-14 and 1.0-12 dated 2009-09-21
Title: David Scott's ASH routines
Description: David Scotts ASH routines
ChangeLog | 8 ++++++--
DESCRIPTION | 6 +++---
R/zzz.R | 2 +-
3 files changed, 10 insertions(+), 6 deletions(-)
Author: Fortran code by H. Akima R port by Albrecht Gebhardt
Diff between akima versions 0.5-2 dated 2009-06-14 and 0.5-3 dated 2009-09-21
Title: Interpolation of irregularly spaced data
Description: Linear or cubic spline interpolation for irregular gridded
data
ChangeLog | 30 +++++++++++++++++-------------
DESCRIPTION | 6 +++---
R/zzz.R | 2 +-
man/interpp.Rd | 4 ++--
4 files changed, 23 insertions(+), 19 deletions(-)
Author: Tim Coelli, Arne Henningsen
Title: Stochastic Frontier Analysis
Description: Maximum Likelihood Estimation of Stochastic Frontier
Production and Cost Functions. Two specifications are
available: the error components specification with time-varying
efficiencies (Battese and Coelli, 1992) and a model
specification in which the firm effects are directly influenced
by a number of variables (Battese and Coelli, 1995).
Diff between frontier versions 0.991-2 dated 2009-06-29 and 0.995-2 dated 2009-09-21
DESCRIPTION | 11 INDEX | 3 NAMESPACE | 2 NEWS | 44 R/efficiencies.frontier.R | 147 R/elas.frontierQuad.R | 10 R/frontier.R | 362 R/logLik.frontier.R | 37 R/print.frontier.R | 5 R/print.summary.frontier.R | 6 R/residuals.frontier.R |only R/sfa.R |only R/summary.frontier.R | 27 man/coef.frontier.Rd | 13 man/coef.summary.frontier.Rd | 11 man/efficiencies.frontier.Rd | 17 man/elas.frontierQuad.Rd | 2 man/frontier.Rd | 133 man/logLik.frontier.Rd | 30 man/residuals.frontier.Rd |only man/summary.frontier.Rd | 45 man/vcov.frontier.Rd | 9 src/front41.f | 149 tests/frontier41.Rout.save | 7 tests/frontierTest.R | 646 tests/frontierTest.Rout.save |69097 +++++++++++++++++++++++++++++-------------- tests/nestedModels.R | 30 tests/nestedModels.Rout.save | 47 tests/translogRay.R | 2 tests/translogRay.Rout.save | 172 30 files changed, 48205 insertions(+), 22859 deletions(-)
Author: Andrej-Nikolai Spiess
Diff between qpcR versions 1.2-1 dated 2009-08-13 and 1.2-2 dated 2009-09-21
Title: Modelling and analysis of real-time PCR data
Description: Model fitting, optimal model selection and calculation of
various features that are essential in the analysis of
quantitative real-time polymerase chain reaction (qPCR).
DESCRIPTION | 10 +-
NAMESPACE | 2
R/PRESS.R | 37 ++++-----
R/curvemean.R | 69 +++++++++++------
R/expcomp.R | 22 ++---
R/modlist.R | 2
R/pcrGOF.R | 11 ++
R/pcrbatch.R | 16 ++--
R/pcrboot.r | 5 -
R/pcrfit.r | 61 +++++++++------
R/pcropt2.r |only
R/pcrsim.r | 4 -
R/plot.pcrfit.R | 13 ++-
R/propagate.R | 196 ++++++++++++++++++++++++++------------------------
R/ratiocalc.r | 149 +++++++++++++++++++-------------------
R/rnls.r | 20 +++--
man/PRESS.Rd | 25 +++---
man/curvemean.Rd | 22 +++--
man/modlist.Rd | 2
man/pcrGOF.Rd | 6 +
man/pcrbatch.Rd | 10 +-
man/pcrboot.rd | 2
man/pcrfit.Rd | 60 +++++++++++----
man/pcropt2.rd |only
man/plot.pcrfit.Rd | 15 ++-
man/propagate.Rd | 123 ++++++++++++++++---------------
man/qpcR_functions.rd | 14 ---
man/ratiocalc.Rd | 113 +++++++++++++++-------------
28 files changed, 568 insertions(+), 441 deletions(-)
Author: R. H. Baayen
Title: Data sets and functions with "Analyzing Linguistic Data: A
practical introduction to statistics".
Description: Data sets exemplifying statistical methods, and some
facilitatory utility functions used in "Analyzing Linguistic
Data: A practical introduction to statistics using R",
Cambridge University Press, 2008.
Diff between languageR versions 0.953 dated 2008-09-06 and 0.955 dated 2009-09-21
languageR-0.953/languageR/Read-and-delete-me |only languageR-0.955/languageR/DESCRIPTION | 26 +++++++++++--------- languageR-0.955/languageR/R/aovlmer.fnc.R | 14 +++++++--- languageR-0.955/languageR/R/lmerPlotInt.fnc.R | 23 ++++++++++++++--- languageR-0.955/languageR/R/plot.logistic.fit.fnc.R | 1 languageR-0.955/languageR/R/plotAll.fnc.R | 6 ++-- languageR-0.955/languageR/R/plotLMER.fnc.R | 20 ++++++++++----- languageR-0.955/languageR/man/latinsquare.Rd | 4 +-- languageR-0.955/languageR/man/lmerPlotInt.fnc.Rd | 6 +++- languageR-0.955/languageR/man/plotAll.fnc.Rd | 3 +- languageR-0.955/languageR/man/plotLMER.fnc.Rd | 6 +++- languageR-0.955/languageR/man/shadenormal.fnc.Rd | 4 +-- 12 files changed, 77 insertions(+), 36 deletions(-)
Author: Adrian Dusa
Diff between QCA versions 0.5-4 dated 2009-07-01 and 0.6-0 dated 2009-09-21
Title: Qualitative Comparative Analysis
Description: Performs the Quine-McCluskey algorithm for Qualitative
Comparative Analysis, as described in Ragin, Charles C. 1987
"The Comparative Method. Moving beyond qualitative and
quantitative strategies", Berkeley: University of California
Press. In the classical approach it currently handles about 15
conditions and one outcome, but since version 0.4-5 the package
has an enhanced, faster function that obtains the same exact
solutions with a substantially lower memory consumption, and it
handles even more causal conditions. The next versions of this
algorithm will be oriented towards multi-value and fuzzy-set
functions. Also, in the near future the current functions will
deal with missing values in the data
QCA-0.5-4/QCA/man/prettyString.Rd |only
QCA-0.6-0/QCA/DESCRIPTION | 8 +-
QCA-0.6-0/QCA/NAMESPACE | 2
QCA-0.6-0/QCA/R/createString.R | 30 ++++++-----
QCA-0.6-0/QCA/R/demoChart.R | 5 -
QCA-0.6-0/QCA/R/eqmcc.R | 102 ++++++++++++++++----------------------
QCA-0.6-0/QCA/R/findPrimes.R | 8 +-
QCA-0.6-0/QCA/R/prettyString.R | 27 ++--------
QCA-0.6-0/QCA/R/qmcc.R | 85 +++++++++++++++++--------------
QCA-0.6-0/QCA/R/verifyQCA.R | 12 ++--
QCA-0.6-0/QCA/R/writePrimeimp.R | 18 ++++--
QCA-0.6-0/QCA/data/MV.tab |only
QCA-0.6-0/QCA/inst/CHANGES | 36 +++++++++----
QCA-0.6-0/QCA/inst/TODO | 3 -
QCA-0.6-0/QCA/man/MV.Rd |only
QCA-0.6-0/QCA/man/QCA-internal.Rd | 15 ++---
QCA-0.6-0/QCA/man/QCA.package.Rd | 4 -
QCA-0.6-0/QCA/man/createString.Rd | 5 +
QCA-0.6-0/QCA/man/demoChart.Rd | 4 -
QCA-0.6-0/QCA/man/eqmcc.Rd | 36 +++++++------
QCA-0.6-0/QCA/man/findPrimes.Rd | 4 -
QCA-0.6-0/QCA/man/qmcc.Rd | 5 +
22 files changed, 212 insertions(+), 197 deletions(-)
Author: Satwik Rajaram and Yoshi Oono
Title: Non-clustered heatmap alternatives
Description: NeatMap is a package to create heatmap like plots in 2 and
3 dimensions, without the need for cluster analysis. Like the
heatmap, the plots created by NeatMap display both a
dimensionally reduced representation of the data as well as the
data itself. They are intended to be used in conjunction with
dimensional reduction techniques such as PCA.
Diff between NeatMap versions 0.2 dated 2009-05-15 and 0.3.1 dated 2009-09-21
DESCRIPTION | 8 +-- NAMESPACE | 2 R/CircularPlot.R | 95 ++++++++++++++++++++++++++++---------------- R/Heatmap1.R | 12 +++-- R/ProfilePlot3D.R | 51 ++++++++++++++++++++--- R/Stereo.R |only man/NeatMap-package.Rd | 14 +++--- man/circularmap.Rd | 6 +- man/draw.dendrogram.Rd | 2 man/heatmap1.Rd | 6 +- man/nMDS.Rd | 2 man/profileplot3d.Rd | 6 +- man/stereo.profileplot3d.Rd |only 13 files changed, 138 insertions(+), 66 deletions(-)