Author: Yves Croissant
Diff between plm versions 1.1-4 dated 2009-06-07 and 1.2-0 dated 2009-09-23
Title: Linear models for panel data
Description: A set of estimators and tests for panel data
DESCRIPTION | 10
NAMESPACE | 184 -
R/attributes.R | 70
R/describe.R |only
R/divers.R | 24
R/dynformula.R | 5
R/ercomp.R | 95
R/fixef.R | 7
R/has.intercept.R |only
R/options.R | 2
R/pFormula.R | 237 -
R/pcdtest.R | 149
R/pfunctions.R | 545 ++-
R/pggls.R | 12
R/pgmm.R | 50
R/pht.R |only
R/plm.R | 366 --
R/plm.data.R | 2
R/plm.methods.R | 18
R/pserial.R | 55
R/ptest.R | 20
R/pvcm.R | 38
changelog | 20
inst/doc/bibliojss.bib | 15
inst/doc/plm.R |only
inst/doc/plm.pdf | 7751 ++++++++++++++++++++++++-------------------------
inst/doc/plm.rnw | 253 +
man/Produc.Rd | 2
man/dynformula.Rd | 57
man/ercomp.Rd | 37
man/fixef.plm.Rd | 12
man/pFormula.Rd |only
man/pdata.frame.Rd |only
man/pdim.Rd | 29
man/pggls.Rd | 22
man/pgmm.Rd | 30
man/pht.Rd |only
man/phtest.Rd | 2
man/plm.Rd | 9
man/plm.data.Rd | 6
man/pmodel.response.Rd |only
man/pooltest.Rd | 2
man/pserie.Rd |only
man/pvar.Rd | 47
man/pvcm.Rd | 30
man/pwtest.Rd | 2
man/sargan.Rd | 8
man/vcovHC.Rd | 10
tests |only
49 files changed, 5245 insertions(+), 4988 deletions(-)
Author: Yves Croissant, Achim Zeileis
Title: Extended Model Formulas
Description: Infrastructure for extended formulas with multiple parts
on the right-hand side and/or multiple responses on the
left-hand side.
Diff between Formula versions 0.1-3 dated 2009-02-13 and 0.2-0 dated 2009-09-23
COPYRIGHTS | 2 DESCRIPTION | 16 + NAMESPACE | 24 +- NEWS | 30 +++ R/Formula.R | 390 +++++++++++++++++++++++++++++++-------------- inst/doc |only man/Formula.Rd | 190 +++++++++++---------- man/model.frame.Formula.Rd |only 8 files changed, 429 insertions(+), 223 deletions(-)
Author: Christian Kleiber, Achim Zeileis
Title: Applied Econometrics with R
Description: Functions, data sets, examples, demos, and vignettes for
the book Christian Kleiber and Achim Zeileis (2008), Applied
Econometrics with R, Springer-Verlag, New York. ISBN
978-0-387-77316-2. (See the vignette for a package overview.)
Diff between AER versions 1.1-3 dated 2009-05-21 and 1.1-4 dated 2009-09-23
DESCRIPTION | 12 +++--- NEWS | 10 +++++ R/ivreg.R | 62 +++++++---------------------------- inst/doc/AER.Rnw | 9 ++++- inst/doc/AER.pdf |binary inst/doc/Sweave-journals.pdf | 12 +++--- man/BenderlyZwick.Rd | 2 - man/CollegeDistance.Rd | 2 - man/Greene2003.Rd | 4 +- man/GrowthDJ.Rd | 8 +--- man/HousePrices.Rd | 2 - man/ManufactCosts.Rd | 2 - man/MotorCycles.Rd | 2 - man/OECDGas.Rd | 2 - man/OECDGrowth.Rd | 2 - man/PSID1976.Rd | 2 - man/RecreationDemand.Rd | 2 - man/ResumeNames.Rd | 2 - man/STAR.Rd | 8 ++-- man/ivreg.Rd | 2 - man/ivreg.fit.Rd | 6 +-- man/summary.ivreg.Rd | 6 +-- man/tobit.Rd | 12 +++--- tests/Ch-Basics.Rout.save | 4 +- tests/Ch-Intro.Rout.save | 12 +++--- tests/Ch-LinearRegression.Rout.save | 39 ++++++---------------- tests/Ch-Microeconometrics.Rout.save | 7 ++- tests/Ch-Programming.Rout.save | 4 +- tests/Ch-TimeSeries.Rout.save | 8 ++-- tests/Ch-Validation.Rout.save | 8 ++-- tests/Rplots.pdf |only 31 files changed, 113 insertions(+), 140 deletions(-)
Author: Martin Kober
Title: String Kernel Methods for kernlab
Description: Gapped and word-based string kernels for use with kernlab
Diff between stringkernels versions 0.8.6 dated 2009-08-21 and 0.8.7 dated 2009-09-23
DESCRIPTION | 9 +++++---- man/multigapweightkernel.Rd | 10 ++++++++-- man/precomputed.Rd | 12 +++++++++--- 3 files changed, 22 insertions(+), 9 deletions(-)
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.9.2.1 dated 2009-09-21 and 2.9.2.2 dated 2009-09-23
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 8 ++++----
R/epicalc.R | 55 ++++++++++++++++++++++++++++++++++++-------------------
2 files changed, 40 insertions(+), 23 deletions(-)
Author: Markus Kalisch, Martin Maechler, Diego Colombo
Title: Estimation of CPDAG/PAG and causal inference
Description: Standard and robust estimation the equivalence class of a
Directed Acyclic Graph (DAG) via the PC-Algorithm. The
equivalence class is represented by its (unique) Completetd
Partially Directed Acyclic Graph (CPDAG). The function pcSelect
implements variable selection techniques based on the
PC-algorithm. Furthermore, a PAG instead of a CPDAG can be
estimated if latent variables and/or selection variables are
assumed to be present. Functions for causal inference (using
do-calculus of Judea Pearl) are provided for CPDAGs.
Diff between pcalg versions 0.1-8 dated 2009-03-06 and 0.1-9 dated 2009-09-23
DESCRIPTION | 28 - NAMESPACE | 9 R/pcalg.R | 946 +++++++++++++++++++++++++++++++++++++++++++++- inst/doc/Sweave-pcalg.pdf |binary man/compareGraphs.Rd | 2 man/pcAlgo.Rd | 8 man/pcalg-internal.Rd | 6 man/plotAG.Rd |only man/udag2pag.Rd |only tests/test_udag2pag.R |only 10 files changed, 979 insertions(+), 20 deletions(-)
Author: Nandita Mukhopadhyay
Diff between nplplot versions 4.3 dated 2009-06-16 and 4.4 dated 2009-09-23
Title: Plotting non-parametric linkage results
Description: nplplot: Plots curves for non parametric linkage results
contained within a file or a table; nplplot.multi: wrapper
function for nplplot to graph multiple plot-data files, and
save these in PDF or postscript format; nplplot.old: the old
nplplot function that combined nplplot and nplplot.multi into
one function, please use the other two functions instead.
DESCRIPTION | 8 ++++----
R/nplplot.multi.R | 15 +--------------
2 files changed, 5 insertions(+), 18 deletions(-)
Author: Torsten Hothorn, Peter Buhlmann, Thomas Kneib, Matthias Schmid
and Benjamin Hofner
Title: Model-Based Boosting
Description: Functional gradient descent algorithms (boosting) for
optimizing general loss functions utilizing componentwise least
squares, either of parametric linear form or smoothing splines,
or regression trees as base learners for fitting generalized
linear, additive and interaction models to potentially
high-dimensional data.
Diff between mboost versions 1.1-2 dated 2009-07-21 and 1.1-3 dated 2009-09-23
mboost-1.1-2/mboost/tests/codetools-checks.R |only mboost-1.1-2/mboost/tests/codetools-checks.Rout.save |only mboost-1.1-3/mboost/DESCRIPTION | 8 mboost-1.1-3/mboost/NEWS | 42 +- mboost-1.1-3/mboost/R/crossvalidation.R | 15 mboost-1.1-3/mboost/R/family.R | 3 mboost-1.1-3/mboost/R/gamboost.R | 6 mboost-1.1-3/mboost/R/glmboost.R | 46 +- mboost-1.1-3/mboost/R/xsp.R | 46 +- mboost-1.1-3/mboost/benny.txt |only mboost-1.1-3/mboost/inst/CHANGES | 42 +- mboost-1.1-3/mboost/inst/Rplots.pdf |only mboost-1.1-3/mboost/inst/birds_Biometrics.Rout |only mboost-1.1-3/mboost/inst/doc/SurvivalEnsembles.pdf |binary mboost-1.1-3/mboost/inst/doc/mboost_illustrations.R |only mboost-1.1-3/mboost/inst/doc/mboost_illustrations.bbl |only mboost-1.1-3/mboost/inst/doc/mboost_illustrations.blg |only mboost-1.1-3/mboost/inst/doc/mboost_illustrations.pdf |binary mboost-1.1-3/mboost/man/baselearners.Rd | 15 mboost-1.1-3/mboost/man/blackboost.Rd | 6 mboost-1.1-3/mboost/man/methods.Rd | 3 mboost-1.1-3/mboost/tests/Examples/mboost-Ex.Rout.save | 243 +++++++++------ mboost-1.1-3/mboost/tests/bugfixes.Rout.save | 7 mboost-1.1-3/mboost/tests/mboost_illustrations.Rout.save | 44 +- mboost-1.1-3/mboost/tests/regtest-blackboost.Rout.save | 52 +-- mboost-1.1-3/mboost/tests/regtest-gamboost.Rout.save | 1 mboost-1.1-3/mboost/to_do_list.txt | 2 27 files changed, 349 insertions(+), 232 deletions(-)
Author: Sebastien Dejean, Ignacio Gonzalez and Kim-Anh Le Cao
Title: Integrate Omics data project
Description: The package supplies two efficients methodologies:
regularized CCA and sparse PLS to unravel relationships between
two heterogeneous data sets of size (nxp) and (nxq) where the p
and q variables are measured on the same samples or individuals
n. These data may come from high throughput technologies, such
as omics data (e.g. transcriptomics, metabolomics or proteomics
data) that require an integrative or joint analysis. However,
integrOmics can also be applied to any other large data sets
where p+q>>n. rCCA is a regularized version of CCA to deal with
the large number of variables. sPLS allows variable selection
in a one step procedure and two frameworks are proposed:
regression and canonical analysis. Numerous graphical outputs
are provided to help interpreting the results.
Diff between integrOmics versions 2.3 dated 2009-07-18 and 2.4 dated 2009-09-23
DESCRIPTION | 10 +++++----- NAMESPACE | 12 +++++++++++- R/plot3dIndiv.rcc.R |only R/plot3dIndiv.spls.R |only R/plot3dVar.rcc.R |only R/plot3dVar.spls.R |only R/pls.R | 4 ++-- R/spls.R | 8 +++++--- R/valid.R | 22 ++-------------------- man/network.Rd | 45 ++++++++++++++++++++++++--------------------- man/plot3dIndiv.Rd |only man/plot3dVar.Rd |only man/pls.Rd | 6 ++++-- man/spls.Rd | 4 +++- man/valid.Rd | 7 +++++-- 15 files changed, 61 insertions(+), 57 deletions(-)
Author: Henrik Bengtsson
Diff between R.huge versions 0.1.8 dated 2009-06-14 and 0.1.9 dated 2009-09-23
Title: Methods for accessing huge amounts of data [DEPRECATED]
Description: THIS PACKAGE HAS BEEN DEPRECATED. Do not start building
new projects based on it. Cross-platform alternatives are the
following packages: bigmemory (CRAN), ff (CRAN), BufferedMatrix
(BioConductor). The main usage of it was inside the
aroma.affymetrix package. (The package currently provides a
class representing a matrix where the actual data is stored in
a binary format on the local file system. This way the size
limit of the data is set by the file system and not the
memory.)
DESCRIPTION | 12 +++++++-----
R/AbstractFileArray.R | 26 ++++++++++++++++++++++++--
R/FileMatrix.R | 4 ----
inst/NEWS | 7 +++++++
man/AbstractFileArray.Rd | 2 +-
man/FileMatrix.Rd | 2 +-
man/FileVector.Rd | 2 +-
man/colnames.FileMatrix.Rd | 1 -
man/ncol.FileMatrix.Rd | 1 -
man/nrow.FileMatrix.Rd | 1 -
man/readAllValues.AbstractFileArray.Rd | 2 +-
man/rownames.FileMatrix.Rd | 1 -
12 files changed, 42 insertions(+), 19 deletions(-)
Author: Adrian Dusa
Diff between QCA versions 0.6-1 dated 2009-09-22 and 0.6-2 dated 2009-09-23
Title: Qualitative Comparative Analysis
Description: Performs the Quine-McCluskey algorithm for Qualitative
Comparative Analysis, both for bvQCA (binary-value QCA) and for
mvQCA (multi-value QCA). In the classical approach it currently
handles about 15 conditions and one outcome for binary data
only, but since version 0.4-5 the package has an enhanced,
faster function that obtains the same exact solutions with a
substantially lower memory consumption, it handles even more
causal conditions and it can be used for mvQCA as well. The
next versions of this algorithm will be oriented towards
fuzzy-set functions. Also, in the near future the current
functions will deal with missing values in the data
DESCRIPTION | 29 +++++++++++-------------
R/createString.R | 2 -
R/demoChart.R | 1
R/eqmcc.R | 3 --
R/factorize.R | 42 +++++------------------------------
R/findPrimes.R | 12 +++++++---
R/findSubsets.R | 1
R/qmcc.R | 2 -
R/writePrimeimp.R | 2 -
inst/CHANGES | 60 +++++++++++++++++++++++++++++++-------------------
man/QCA.package.Rd | 18 ++++++---------
man/allExpressions.Rd | 2 -
man/createMatrix.Rd | 2 -
man/demoChart.Rd | 6 ++---
man/eqmcc.Rd | 10 +++++---
man/factorize.Rd | 9 +++----
man/findPrimes.Rd | 3 --
man/findSubsets.Rd | 3 --
man/qmcc.Rd | 6 ++---
man/solveChart.Rd | 2 -
man/truthTable.Rd | 2 -
21 files changed, 105 insertions(+), 112 deletions(-)
Author: David Scott
Diff between HyperbolicDist versions 0.5-3 dated 2009-03-12 and 0.6-2 dated 2009-09-23
More information about HyperbolicDist at CRAN
Title: The hyperbolic distribution
Description: This package provides functions for the hyperbolic and
related distributions. Density, distribution and quantile
functions and random number generation are provided for the
hyperbolic distribution, the generalized hyperbolic
distribution, the generalized inverse Gaussian distribution and
the skew-Laplace distribution. Additional functionality is
provided for the hyperbolic distribution, including fitting of
the hyperbolic to data.
HyperbolicDist-0.5-3/HyperbolicDist/R/ghypMean.R |only
HyperbolicDist-0.5-3/HyperbolicDist/R/gigMean.R |only
HyperbolicDist-0.5-3/HyperbolicDist/R/hyperbMean.R |only
HyperbolicDist-0.5-3/HyperbolicDist/man/ghypMean.Rd |only
HyperbolicDist-0.5-3/HyperbolicDist/man/gigMean.Rd |only
HyperbolicDist-0.5-3/HyperbolicDist/man/hyperbMean.Rd |only
HyperbolicDist-0.6-2/HyperbolicDist/ChangeLog | 152 +++++++----
HyperbolicDist-0.6-2/HyperbolicDist/DESCRIPTION | 13
HyperbolicDist-0.6-2/HyperbolicDist/NAMESPACE | 4
HyperbolicDist-0.6-2/HyperbolicDist/R/besselRatio.R |only
HyperbolicDist-0.6-2/HyperbolicDist/R/ghypMeanVarMode.R |only
HyperbolicDist-0.6-2/HyperbolicDist/R/ghypMom.R |only
HyperbolicDist-0.6-2/HyperbolicDist/R/gigCheckPars.R |only
HyperbolicDist-0.6-2/HyperbolicDist/R/gigMeanVarMode.R |only
HyperbolicDist-0.6-2/HyperbolicDist/R/gigMom.R |only
HyperbolicDist-0.6-2/HyperbolicDist/R/hyperbMeanVarMode.R |only
HyperbolicDist-0.6-2/HyperbolicDist/R/is.wholenumber.R |only
HyperbolicDist-0.6-2/HyperbolicDist/R/momChangeAbout.R |only
HyperbolicDist-0.6-2/HyperbolicDist/R/momIntegrated.R |only
HyperbolicDist-0.6-2/HyperbolicDist/R/momRecursion.R |only
HyperbolicDist-0.6-2/HyperbolicDist/man/besselRatio.Rd |only
HyperbolicDist-0.6-2/HyperbolicDist/man/ghypMeanVarMode.Rd |only
HyperbolicDist-0.6-2/HyperbolicDist/man/ghypMom.Rd |only
HyperbolicDist-0.6-2/HyperbolicDist/man/gigCheckPars.Rd |only
HyperbolicDist-0.6-2/HyperbolicDist/man/gigMeanVarMode.Rd |only
HyperbolicDist-0.6-2/HyperbolicDist/man/gigMom.Rd |only
HyperbolicDist-0.6-2/HyperbolicDist/man/hyperbFit.Rd | 4
HyperbolicDist-0.6-2/HyperbolicDist/man/hyperbMeanVarMode.Rd |only
HyperbolicDist-0.6-2/HyperbolicDist/man/is.wholenumber.Rd |only
HyperbolicDist-0.6-2/HyperbolicDist/man/momChangeAbout.Rd |only
HyperbolicDist-0.6-2/HyperbolicDist/man/momIntegrated.Rd |only
HyperbolicDist-0.6-2/HyperbolicDist/man/momRecursion.Rd |only
HyperbolicDist-0.6-2/HyperbolicDist/man/safeIntegrate.Rd | 10
HyperbolicDist-0.6-2/HyperbolicDist/tests |only
34 files changed, 122 insertions(+), 61 deletions(-)
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